Genome-wide reinforcement of cohesin binding at pre-existing cohesin sites in response to ionizing radiation in human cells

Journal of Biological Chemistry

Volumn 285, Issue 30, 2010, Pages 22784-22792

  Kim, Beom Jun ^a   Li, Yehua ^a   Zhang, Jinglan ^a   Xi, Yuanxin ^a   Li, Yumei ^a   Yang, Tao ^a   Jung, Sung Yun ^a   Pan, Xuewen ^a   Chen, Rui ^a   Li, Wei ^a   Wang, Yi ^a   Qin, Jun ^a  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACETYL TRANSFERASE; CELL CYCLE; CHROMOSOME SEGREGATION; COHESINS; CORE COMPONENTS; DNA DAMAGE RESPONSE; HUMAN CANCER CELLS; HUMAN CELLS; S-PHASE;

ACETYLATION; BINDING ENERGY; BIOCHEMISTRY; DNA; GENES; IONIZING RADIATION; PHOSPHORYLATION; RADIATION SHIELDING; RADIOACTIVITY; REINFORCEMENT;

BINDING SITES;

ACYLTRANSFERASE; ATM PROTEIN; ATR PROTEIN; COHESIN; LYSINE; PROTEIN ESCO1; PROTEIN SMC1; PROTEIN SMC3; PROTEIN SUBUNIT; UNCLASSIFIED DRUG;

ACETYLATION; ARTICLE; BINDING SITE; CANCER CELL CULTURE; CELL CYCLE S PHASE; CELL SURVIVAL; CONTROLLED STUDY; DNA DAMAGE; DNA REPAIR; GENETIC REGULATION; GENOME ANALYSIS; HELA CELL; HUMAN; HUMAN CELL; IONIZING RADIATION; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN MODIFICATION; PROTEIN PHOSPHORYLATION; RADIATION RESPONSE; SIGNAL TRANSDUCTION;

ACETYLATION; ANIMALS; BINDING SITES; CELL CYCLE PROTEINS; CHROMATIN; CHROMOSOMAL PROTEINS, NON-HISTONE; DNA BREAKS, DOUBLE-STRANDED; DNA-BINDING PROTEINS; GENOME, HUMAN; HELA CELLS; HUMANS; PHOSPHORYLATION; PROTEIN BINDING; PROTEIN-SERINE-THREONINE KINASES; PROTEOCHONDROITIN SULFATES; TUMOR SUPPRESSOR PROTEINS;

EID: 77954901707     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.134577     Document Type: Article

References (45)

1. Onn, I., Heidinger-Pauli, J. M., Guacci, V., Unal, E., and Koshland, D. E. (2008) Annu. Rev. Cell Dev. Biol. 24, 105-129
2. Peters, J. M., Tedeschi, A., and Schmitz, J. (2008) Genes Dev. 22, 3089-3114
3. Losada, A., and Hirano, T. (2005) Genes Dev. 19, 1269-1287
4. Nasmyth, K., and Haering, C. H. (2009) Annu. Rev. Genet. 43, 525-558
5. Zhou, B. B., and Elledge, S. J. (2000) Nature 408, 433-439
6. Harper, J. W., and Elledge, S. J. (2007) Mol. Cell 28, 739-745
7. Matsuoka, S., Ballif, B. A., Smogorzewska, A., McDonald, E. R., 3rd, Hurov, K. E., Luo, J., Bakalarski, C. E., Zhao, Z., Solimini, N., Lerenthal, Y., Shiloh, Y., Gygi, S. P., and Elledge, S. J. (2007) Science 316, 1160-1166
8. Shiloh, Y. (2003) Nat. Rev. Cancer 3, 155-168
9. Cimprich, K. A., and Cortez, D. (2008) Nat. Rev. Mol. Cell Biol. 9, 616-627
10. Kim, S. T., Lim, D. S., Canman, C. E., and Kastan, M. B. (1999) J. Biol. Chem. 274, 37538-37543
11. Shiloh, Y. (2006) Trends Biochem. Sci. 31, 402-410
12. Kim, S. T., Xu, B., and Kastan, M. B. (2002) Genes Dev. 16, 560-570
13. Yazdi, P. T., Wang, Y., Zhao, S., Patel, N., Lee, E. Y., and Qin, J. (2002) Genes Dev. 16, 571-582
14. Kitagawa, R., Bakkenist, C. J., McKinnon, P. J., and Kastan, M. B. (2004) Genes Dev. 18, 1423-1438
15. Luo, H., Li, Y., Mu, J. J., Zhang, J., Tonaka, T., Hamamori, Y., Jung, S. Y., Wang, Y., and Qin, J. (2008) J. Biol. Chem. 283, 19176-19183
16. Ström, L., Lindroos, H. B., Shirahige, K., and Sjögren, C. (2004) Mol. Cell 16, 1003-1015
17. Bekker-Jensen, S., Lukas, C., Kitagawa, R., Melander, F., Kastan, M. B., Bartek, J., and Lukas, J. (2006) J. Cell Biol. 173, 195-206
18. Skibbens, R. V., Corson, L. B., Koshland, D., and Hieter, P. (1999) Genes Dev. 13, 307-319
19. Tóth, A., Ciosk, R., Uhlmann, F., Galova, M., Schleiffer, A., and Nasmyth, K. (1999) Genes Dev. 13, 320-333
20. Rolef Ben-Shahar, T., Heeger, S., Lehane, C., East, P., Flynn, H., Skehel, M., and Uhlmann, F. (2008) Science 321, 563-566
21. Unal, E., Heidinger-Pauli, J. M., Kim, W., Guacci, V., Onn, I., Gygi, S. P., and Koshland, D. E. (2008) Science 321, 566-569
22. Zhang, J., Shi, X., Li, Y., Kim, B. J., Jia, J., Huang, Z., Yang, T., Fu, X., Jung, S. Y., Wang, Y., Zhang, P., Kim, S. T., Pan, X., and Qin, J. (2008) Mol. Cell 31, 143-151
23. Ström, L., Karlsson, C., Lindroos, H. B., Wedahl, S., Katou, Y., Shirahige, K., and Sjögren, C. (2007) Science 317, 242-245
24. Unal, E., Heidinger-Pauli, J. M., and Koshland, D. (2007) Science 317, 245-248
25. Heidinger-Pauli, J. M., Unal, E., and Koshland, D. (2009) Mol. Cell 34, 311-321
26. Lengronne, A., Katou, Y., Mori, S., Yokobayashi, S., Kelly, G. P., Itoh, T., Watanabe, Y., Shirahige, K., and Uhlmann, F. (2004) Nature 430, 573-578
27. Schmidt, C. K., Brookes, N., and Uhlmann, F. (2009) Genome Biol. 10, R52
28. Wendt, K. S., Yoshida, K., Itoh, T., Bando, M., Koch, B., Schirghuber, E., Tsutsumi, S., Nagae, G., Ishihara, K., Mishiro, T., Yahata, K., Imamoto, F., Aburatani, H., Nakao, M., Imamoto, N., Maeshima, K., Shirahige, K., and Peters, J. M. (2008) Nature 451, 796-801
29. Rubio, E. D., Reiss, D. J., Welcsh, P. L., Disteche, C. M., Filippova, G. N., Baliga, N. S., Aebersold, R., Ranish, J. A., and Krumm, A. (2008) Proc. Natl. Acad. Sci. U.S.A. 105, 8309-8314
30. Stedman, W., Kang, H., Lin, S., Kissil, J. L., Bartolomei, M. S., and Lieberman, P. M. (2008) EMBO J. 27, 654-666
31. Parelho, V., Hadjur, S., Spivakov, M., Leleu, M., Sauer, S., Gregson, H. C., Jarmuz, A., Canzonetta, C., Webster, Z., Nesterova, T., Cobb, B. S., Yokomori, K., Dillon, N., Aragon, L., Fisher, A. G., and Merkenschlager, M. (2008) Cell 132, 422-433
32. Hadjur, S., Williams, L. M., Ryan, N. K., Cobb, B. S., Sexton, T., Fraser, P., Fisher, A. G., and Merkenschlager, M. (2009) Nature 460, 410-413
33. Mishiro, T., Ishihara, K., Hino, S., Tsutsumi, S., Aburatani, H., Shirahige, K., Kinoshita, Y., and Nakao, M. (2009) EMBO J. 28, 1234-1245
34. Zhang, Y., Liu, T., Meyer, C. A., Eeckhoute, J., Johnson, D. S., Bernstein, B. E., Nussbaum, C., Myers, R. M., Brown, M., Li, W., and Liu, X. S. (2008) Genome Biol. 9, R137
35. Gerlich, D., Koch, B., Dupeux, F., Peters, J. M., and Ellenberg, J. (2006) Curr. Biol. 16, 1571-1578
36. Chen, B. P., Uematsu, N., Kobayashi, J., Lerenthal, Y., Krempler, A., Yajima, H., Löbrich, M., Shiloh, Y., and Chen, D. J. (2007) J. Biol. Chem. 282, 6582-6587
37. Unal, E., Arbel-Eden, A., Sattler, U., Shroff, R., Lichten, M., Haber, J. E., and Koshland, D. (2004) Mol. Cell 16, 991-1002
38. Arumugam, P., Gruber, S., Tanaka, K., Haering, C. H., Mechtler, K., and Nasmyth, K. (2003) Curr. Biol. 13, 1941-1953
39. Rowland, B. D., Roig, M. B., Nishino, T., Kurze, A., Uluocak, P., Mishra, A., Beckouët, F., Underwood, P., Metson, J., Imre, R., Mechtler, K., Katis, V. L., and Nasmyth, K. (2009) Mol. Cell 33, 763-774
40. Terret, M. E., Sherwood, R., Rahman, S., Qin, J., and Jallepalli, P. V. (2009) Nature 462, 231-234
41. Heidinger-Pauli, J. M., Unal, E., Guacci, V., and Koshland, D. (2008) Mol. Cell 31, 47-56
42. Bernard, P., Schmidt, C. K., Vaur, S., Dheur, S., Drogat, J., Genier, S., Ekwall, K., Uhlmann, F., and Javerzat, J. P. (2008) EMBO J. 27, 111-121
43. Gandhi, R., Gillespie, P. J., and Hirano, T. (2006) Curr. Biol. 16, 2406-2417
44. Kueng, S., Hegemann, B., Peters, B. H., Lipp, J. J., Schleiffer, A., Mechtler, K., and Peters, J. M. (2006) Cell 127, 955-967
45. Sutani, T., Kawaguchi, T., Kanno, R., Itoh, T., and Shirahige, K. (2009) Curr. Biol. 19, 492-497