-
1
-
-
0037565061
-
Efflux-mediated heavy metal resistance in prokaryotes
-
DOI 10.1016/S0168-6445(03)00048-2
-
Nies DH (2003) Efflux-mediated heavy metal resistance in prokaryotes. FEMS Microbiol Rev 27:313-339. (Pubitemid 36700434)
-
(2003)
FEMS Microbiology Reviews
, vol.27
, Issue.2-3
, pp. 313-339
-
-
Nies, D.H.1
-
2
-
-
64649096369
-
Mechanisms of RND multidrug efflux pumps
-
Nikaido H, Takatsuka Y (2009) Mechanisms of RND multidrug efflux pumps. Biochim Biophys Acta 1794:769-781.
-
(2009)
Biochim Biophys Acta
, vol.1794
, pp. 769-781
-
-
Nikaido, H.1
Takatsuka, Y.2
-
3
-
-
0037057652
-
Crystal structure of bacterial multidrug efflux transporter AcrB
-
Murakami S, Nakashima R, Yamashita E, Yamaguchi A (2002) Crystal structure of bacterial multidrug efflux transporter AcrB. Nature 419:587-593.
-
(2002)
Nature
, vol.419
, pp. 587-593
-
-
Murakami, S.1
Nakashima, R.2
Yamashita, E.3
Yamaguchi, A.4
-
4
-
-
33748670458
-
Crystal structures of a multidrug transporter reveal a functionally rotating mechanism
-
DOI 10.1038/nature05076, PII NATURE05076
-
Murakami S, Nakashima R, Yamashita E, Matsumoto T, Yamaguchi A (2006) Crystal structures of a multidrug transporter reveal a functionally rotating mechanism. Nature 443:173-179. (Pubitemid 44387601)
-
(2006)
Nature
, vol.443
, Issue.7108
, pp. 173-179
-
-
Murakami, S.1
Nakashima, R.2
Yamashita, E.3
Matsumoto, T.4
Yamaguchi, A.5
-
5
-
-
33748310520
-
Structural asymmetry of AcrB trimer suggests a peristaltic pump mechanism
-
Seeger MA, et al. (2006) Structural asymmetry of AcrB trimer suggests a peristaltic pump mechanism. Science 313:1295-1298.
-
(2006)
Science
, vol.313
, pp. 1295-1298
-
-
Seeger, M.A.1
-
6
-
-
65449155090
-
Crystal structure of the multidrug exporter MexB from Pseudomonas aeruginosa
-
Sennhauser G, Bukowska MA, Briand C, Grütter MG (2009) Crystal structure of the multidrug exporter MexB from Pseudomonas aeruginosa. J Mol Biol 389:134-145.
-
(2009)
J Mol Biol
, vol.389
, pp. 134-145
-
-
Sennhauser, G.1
Bukowska, M.A.2
Briand, C.3
Grütter, M.G.4
-
7
-
-
0034702177
-
Crystal structure of the bacterial membrane protein TolC central to multidrug efflux and protein export
-
DOI 10.1038/35016007
-
Koronakis V, Sharff A, Koronakis E, Luisi B, Hughes C (2000) Crystal structure of the bacterial membrane protein TolC central to multidrug efflux and protein export. Nature 405:914-919. (Pubitemid 30435040)
-
(2000)
Nature
, vol.405
, Issue.6789
, pp. 914-919
-
-
Koronakis, V.1
Sharff, A.2
Koronakis, E.3
Luisi, B.4
Hughes, C.5
-
8
-
-
11144222920
-
Crystal structure of the drug discharge outer membrane protein, OprM, of Pseudomonas aeruginosa: Dual modes of membrane anchoring and occluded cavity end
-
DOI 10.1074/jbc.C400445200
-
Akama H, et al. (2004) Crystal structure of the drug discharge outer membrane protein, OprM, of Pseudomonas aeruginosa: Dual modes of membrane anchoring and occluded cavity end. J Biol Chem 279:52816-52819. (Pubitemid 40051780)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.51
, pp. 52816-52819
-
-
Akama, H.1
Kanemaki, M.2
Yoshimura, M.3
Tsukihara, T.4
Kashiwagi, T.5
Yoneyama, H.6
Narita, S.-I.7
Nakagawa, A.8
Nakae, T.9
-
9
-
-
3042838743
-
Structure of the periplasmic component of a bacterial drug efflux pump
-
DOI 10.1073/pnas.0400375101
-
Higgins MK, Bokma E, Koronakis E, Hughes C, Koronakis V (2004) Structure of the periplasmic component of a bacterial drug efflux pump. Proc Natl Acad Sci USA 101: 9994-9999. (Pubitemid 38891184)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.27
, pp. 9994-9999
-
-
Higgins, M.K.1
Bokma, E.2
Koronakis, E.3
Hughes, C.4
Koronakis, V.5
-
10
-
-
2942731519
-
Crystal structure of the membrane fusion protein, MexA, of the multidrug transporter in Pseudomonas aeruginosa
-
DOI 10.1074/jbc.C400164200
-
Akama H, et al. (2004) Crystal structure of the membrane fusion protein, MexA, of the multidrug transporter in Pseudomonas aeruginosa. J Biol Chem 279:25939-25942. (Pubitemid 38798733)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.25
, pp. 25939-25942
-
-
Akama, H.1
Matsuura, T.2
Kashiwagi, S.3
Yoneyama, H.4
Narita, S.-I.5
Tsukihara, T.6
Nakagawa, A.7
Nakae, T.8
-
11
-
-
66349137043
-
The assembled structure of a complete tripartite bacterial multidrug efflux pump
-
Symmons MF, Bokma E, Koronakis E, Hughes C, Koronakis V (2009) The assembled structure of a complete tripartite bacterial multidrug efflux pump. Proc Natl Acad Sci USA 106:7173-7178.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 7173-7178
-
-
Symmons, M.F.1
Bokma, E.2
Koronakis, E.3
Hughes, C.4
Koronakis, V.5
-
12
-
-
33644833626
-
Conformational flexibility in the multidrug efflux system protein AcrA
-
DOI 10.1016/j.str.2005.11.015, PII S0969212606000633
-
Mikolosko J, Bobyk K, Zgurskaya HI, Ghosh P (2006) Conformational flexibility in the multidrug efflux system protein AcrA. Structure 14:577-587. (Pubitemid 43363490)
-
(2006)
Structure
, vol.14
, Issue.3
, pp. 577-587
-
-
Mikolosko, J.1
Bobyk, K.2
Zgurskaya, H.I.3
Ghosh, P.4
-
13
-
-
70349558132
-
Crystal structure of the membrane fusion protein CusB from Escherichia coli
-
Su CC, et al. (2009) Crystal structure of the membrane fusion protein CusB from Escherichia coli. J Mol Biol 393:342-355.
-
(2009)
J Mol Biol
, vol.393
, pp. 342-355
-
-
Su, C.C.1
-
14
-
-
37249081439
-
Substrate-linked conformational change in the periplasmic component of a Cu(I)/Ag(I) efflux system
-
Bagai I, Liu W, Rensing C, Blackburn NJ, McEvoy MM (2007) Substrate-linked conformational change in the periplasmic component of a Cu(I)/Ag(I) efflux system. J Biol Chem 282:35695-35702.
-
(2007)
J Biol Chem
, vol.282
, pp. 35695-35702
-
-
Bagai, I.1
Liu, W.2
Rensing, C.3
Blackburn, N.J.4
McEvoy, M.M.5
-
15
-
-
0035955547
-
Substrate-triggered recruitment of the TolC channel-tunnel during type I export of hemolysin by Escherichia coli
-
DOI 10.1006/jmbi.2001.5038
-
Balakrishnan L, Hughes C, Koronakis V (2001) Substrate-triggered recruitment of the TolC channel-tunnel during type I export of hemolysin by Escherichia coli. J Mol Biol 313:501-510. (Pubitemid 33052283)
-
(2001)
Journal of Molecular Biology
, vol.313
, Issue.3
, pp. 501-510
-
-
Balakrishnan, L.1
Hughes, C.2
Koronakis, V.3
-
16
-
-
0038645861
-
Identification of oligomerization and drug-binding domains of the membrane fusion protein EmrA
-
Borges-Walmsley MI, et al. (2003) Identification of oligomerization and drug-binding domains of the membrane fusion protein EmrA. J Biol Chem 278:12903-12912.
-
(2003)
J Biol Chem
, vol.278
, pp. 12903-12912
-
-
Borges-Walmsley, M.I.1
-
17
-
-
14644397893
-
Aminoglycosides are captured from both periplasm and cytoplasm by the AcrD multidrug efflux transporter of Escherichia coli
-
Aires JR, Nikaido H (2005) Aminoglycosides are captured from both periplasm and cytoplasm by the AcrD multidrug efflux transporter of Escherichia coli. J Bacteriol 187: 1923-1929.
-
(2005)
J Bacteriol
, vol.187
, pp. 1923-1929
-
-
Aires, J.R.1
Nikaido, H.2
-
18
-
-
0033594886
-
Bypassing the periplasm: Reconstitution of the AcrAB multidrug efflux pump of Escherichia coli
-
Zgurskaya HI, Nikaido H (1999) Bypassing the periplasm: Reconstitution of the AcrAB multidrug efflux pump of Escherichia coli. Proc Natl Acad Sci USA 96:7190-7195.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 7190-7195
-
-
Zgurskaya, H.I.1
Nikaido, H.2
-
19
-
-
34248359106
-
A periplasmic coiled-coil interface underlying TolC recruitment and the assembly of bacterial drug efflux pumps
-
DOI 10.1073/pnas.0610160104
-
Lobedanz S, et al. (2007) A periplasmic coiled-coil interface underlying TolC recruitment and the assembly of bacterial drug efflux pumps. Proc Natl Acad Sci USA 104:4612-4617. (Pubitemid 47186273)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.11
, pp. 4612-4617
-
-
Lobedanz, S.1
Bokma, E.2
Symmons, M.F.3
Koronakis, E.4
Hughes, C.5
Koronakis, V.6
-
21
-
-
64649087897
-
Structural and functional diversity of bacterial membrane fusion proteins
-
Zgurskaya HI, Yamada Y, Tikhonova EB, Ge Q, Krishnamoorthy G (2009) Structural and functional diversity of bacterial membrane fusion proteins. Biochim Biophys Acta 1794:794-807.
-
(2009)
Biochim Biophys Acta
, vol.1794
, pp. 794-807
-
-
Zgurskaya, H.I.1
Yamada, Y.2
Tikhonova, E.B.3
Ge, Q.4
Krishnamoorthy, G.5
-
22
-
-
0038240634
-
Ralstonia metallidurans, a bacterium specifically adapted to toxic metals: Towards a catalogue of metal-responsive genes
-
Mergeay M, et al. (2003) Ralstonia metallidurans, a bacterium specifically adapted to toxic metals: Towards a catalogue of metal-responsive genes. FEMS Microbiol Rev 27: 385-410.
-
(2003)
FEMS Microbiol Rev
, vol.27
, pp. 385-410
-
-
Mergeay, M.1
-
23
-
-
0030621966
-
Studying noncovalent protein complexes by electrospray ionization mass spectrometry
-
Loo JA (1997) Studying noncovalent protein complexes by electrospray ionization mass spectrometry. Mass Spectrom Rev 16:1-23. (Pubitemid 127583217)
-
(1997)
Mass Spectrometry Reviews
, vol.16
, Issue.1
, pp. 1-23
-
-
Loo, J.A.1
-
24
-
-
33845993905
-
The proteomics of N-terminal methionine cleavage
-
Frottin F, et al. (2006) The proteomics of N-terminal methionine cleavage. Mol Cell Proteomics 5:2336-2349.
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 2336-2349
-
-
Frottin, F.1
-
25
-
-
0037090377
-
Quantitative determination of noncovalent binding interactions using soft ionization mass spectrometry
-
Daniel JM, Friess SD, Rajagopalan S, Wendt S, Zenobi R (2002) Quantitative determination of noncovalent binding interactions using soft ionization mass spectrometry. Int J Mass Spectrom 216:1-27.
-
(2002)
Int J Mass Spectrom
, vol.216
, pp. 1-27
-
-
Daniel, J.M.1
Friess, S.D.2
Rajagopalan, S.3
Wendt, S.4
Zenobi, R.5
-
26
-
-
0038688973
-
Measurement of dissociation constants of inhibitors binding to Src SH2 domain protein by non-covalent electrospray ionization mass spectrometry
-
Bligh SW, Haley T, Lowe PN (2003) Measurement of dissociation constants of inhibitors binding to Src SH2 domain protein by non-covalent electrospray ionization mass spectrometry. J Mol Recognit 16:139-148.
-
(2003)
J Mol Recognit
, vol.16
, pp. 139-148
-
-
Bligh, S.W.1
Haley, T.2
Lowe, P.N.3
-
27
-
-
3543008337
-
Determination of dissociation constants for protein-ligand complexes by electrospray ionization mass spectrometry
-
DOI 10.1021/ac0497914
-
Tjernberg A, et al. (2004) Determination of dissociation constants for protein-ligand complexes by electrospray ionization mass spectrometry. Anal Chem 76:4325-4331. (Pubitemid 39014001)
-
(2004)
Analytical Chemistry
, vol.76
, Issue.15
, pp. 4325-4331
-
-
Tjernberg, A.1
Carno, S.2
Oliv, F.3
Benkestock, K.4
Edlund, P.-O.5
Griffiths, W.J.6
Hallen, D.7
-
28
-
-
36649031253
-
Critical evaluation of mass spectrometric measurement of dissociation constants: Accuracy and cross-validation against surface plasmon resonance and circular dichroism for the calmodulin-melittin system
-
Mathur S, Badertscher M, Scott M, Zenobi R (2007) Critical evaluation of mass spectrometric measurement of dissociation constants: Accuracy and cross-validation against surface plasmon resonance and circular dichroism for the calmodulin-melittin system. Phys Chem Chem Phys 9:6187-6198.
-
(2007)
Phys Chem Chem Phys
, vol.9
, pp. 6187-6198
-
-
Mathur, S.1
Badertscher, M.2
Scott, M.3
Zenobi, R.4
-
29
-
-
63449091256
-
Crystal structure of the periplasmic component of a tripartite macrolide-specific efflux pump
-
Yum S, et al. (2009) Crystal structure of the periplasmic component of a tripartite macrolide-specific efflux pump. J Mol Biol 387:1286-1297.
-
(2009)
J Mol Biol
, vol.387
, pp. 1286-1297
-
-
Yum, S.1
-
30
-
-
50849143811
-
Insights into the mode of action of a putative zinc transporter CzrB in Thermus thermophilus
-
Cherezov V, et al. (2008) Insights into the mode of action of a putative zinc transporter CzrB in Thermus thermophilus. Structure 16:1378-1388.
-
(2008)
Structure
, vol.16
, pp. 1378-1388
-
-
Cherezov, V.1
-
31
-
-
33646196840
-
Evaluation of the information content in infrared spectra for protein secondary structure determination
-
Goormaghtigh E, Ruysschaert JM, Raussens V (2006) Evaluation of the information content in infrared spectra for protein secondary structure determination. Biophys J 90:2946-2957.
-
(2006)
Biophys J
, vol.90
, pp. 2946-2957
-
-
Goormaghtigh, E.1
Ruysschaert, J.M.2
Raussens, V.3
-
32
-
-
0035690880
-
Zinc coordination sphere in biochemical zinc sites
-
Auld DS (2001) Zinc coordination sphere in biochemical zinc sites. Biometals 14: 271-313.
-
(2001)
Biometals
, vol.14
, pp. 271-313
-
-
Auld, D.S.1
-
33
-
-
70350146566
-
CzcP is a novel efflux system contributing to transition metal resistance in Cupriavidus metallidurans CH34
-
Scherer J, Nies DH (2009) CzcP is a novel efflux system contributing to transition metal resistance in Cupriavidus metallidurans CH34. Mol Microbiol 73:601-621.
-
(2009)
Mol Microbiol
, vol.73
, pp. 601-621
-
-
Scherer, J.1
Nies, D.H.2
-
34
-
-
67049115572
-
A coordinated network of transporters with overlapping specificities provides a robust survival strategy
-
Tal N, Schuldiner S (2009) A coordinated network of transporters with overlapping specificities provides a robust survival strategy. Proc Natl Acad Sci USA 106:9051-9056.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 9051-9056
-
-
Tal, N.1
Schuldiner, S.2
-
35
-
-
35048813675
-
Plasmids pMOL28 and pMOL30 of Cupriavidus metallidurans are specialized in the maximal viable response to heavy metals
-
DOI 10.1128/JB.00375-07
-
Monchy S, et al. (2007) Plasmids pMOL28 and pMOL30 of Cupriavidus metallidurans are specialized in the maximal viable response to heavy metals. J Bacteriol 189:7417-7425. (Pubitemid 47557358)
-
(2007)
Journal of Bacteriology
, vol.189
, Issue.20
, pp. 7417-7425
-
-
Monchy, S.1
Benotmane, M.A.2
Janssen, P.3
Vallaeys, T.4
Taghavi, S.5
Van Der Lelie, D.6
Mergeay, M.7
-
36
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276:307-326.
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
37
-
-
14244272868
-
PHENIX: Building new software for automated crystallographic structure determination
-
Adams PD, et al. (2002) PHENIX: Building new software for automated crystallographic structure determination. Acta Crystallogr D Biol Crystallogr 58:1948-1954.
-
(2002)
Acta Crystallogr D Biol Crystallogr
, vol.58
, pp. 1948-1954
-
-
Adams, P.D.1
-
40
-
-
33747593473
-
Use of PyMOL as a communications tool for molecular science
-
Delano WL (2004) Use of PyMOL as a communications tool for molecular science. Abstr Pap Am Chem Soc 228:U313-U314.
-
(2004)
Abstr Pap Am Chem Soc
, vol.228
-
-
Delano, W.L.1
-
41
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
Emanuelsson O, Brunak S, von Heijne G, Nielsen H (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2:953-971.
-
(2007)
Nat Protoc
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
42
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
|