Viscoelastic modeling with interfacial slip of a protein monolayer electrode-adsorbed on an acoustic wave biosensor

Langmuir

Volumn 26, Issue 13, 2010, Pages 11558-11567

  Ellis, Jonathan S ^a,b,c   Thompson, Michael ^a,b  

^a UNIVERSITY OF TORONTO   (Canada)

^b UNIVERSITY OF TORONTO   (Canada)

^c UNIVERSITY COLLEGE CORK   (Ireland)

Author keywords

[No Author keywords available]

Indexed keywords

ACOUSTIC WAVE DEVICE; CONFORMATIONAL SHIFTS; DESIRED SIGNAL; ELECTRODE SURFACES; EXPERIMENTAL VALUES; GOLD SURFACES; IMPEDANCE MODELS; INTERFACIAL SLIP; LABEL FREE; LINKER LAYERS; LINKER PROTEINS; MATERIAL CHANGE; MATERIAL PROPERTY; MINIMIZATION ALGORITHMS; MODELING STUDIES; NEUTRAVIDIN; ONE-DIMENSIONAL MODELING; PROTEIN MONOLAYERS; SHEAR MODES; SHEAR MODULUS; VISCOELASTIC MODELING;

ACOUSTIC IMPEDANCE; ACOUSTIC WAVES; ACOUSTICS; ADSORPTION; BIOSENSORS; ELECTRON ENERGY LEVELS; GOLD METALLURGY; HYDRATES; MATERIALS PROPERTIES; MONOLAYERS; PROTEINS; SLIP FORMING;

SURFACES;

AVIDIN; GOLD; NEUTRAVIDIN; PROTEIN;

ACOUSTICS; ARTICLE; CHEMISTRY; ELECTRODE; GENETIC PROCEDURES; METHODOLOGY; PROTEIN SECONDARY STRUCTURE;

ACOUSTICS; AVIDIN; BIOSENSING TECHNIQUES; ELECTRODES; GOLD; PROTEIN STRUCTURE, SECONDARY; PROTEINS;

EID: 77954301796     PISSN: 07437463     EISSN: 15205827     Source Type: Journal    
DOI: 10.1021/la100798c     Document Type: Article

References (118)

1. Dyson, H. J. and Wright, P. E. Annu. Rev. Phys. Chem. 1996, 47, 369-395
2. Greenfield, N. J. Anal. Biochem. 1996, 235, 1-10
3. Goldenberg, D. P. and Creighton, T. E. Anal. Biochem. 1984, 138, 1-18
4. Righetti, P. G. and Verzola, B. Electrophoresis 2001, 22, 2359-2374
5. Karplus, M. and McCammon, J. A. Nat. Struct. Biol. 2002, 9, 646-652
6. van Gunsteren, W. F., Hunenberger, P. H., Mark, A. E., Smith, P. E., and Tironi, I. G. Comput. Phys. Commun. 1995, 91, 305-319
7. Scheuring, S., Fotiadis, D., Möller, C., Müller, S. A., Engel, A., and Müller, D. J. Single Mol. 2001, 2, 59-67
8. Boozer, C., Kim, G., Cong, S., Guan, H., and Londergan, T. Curr. Opin. Biotechnol. 2006, 17, 400-405
9. Robert, K. J. Mol. Recog. 2004, 17, 151-161
10. Cheran, L. E., Chacko, M., Zhang, M. Q., and Thompson, M. Analyst 2004, 129, 161-168
11. Cheran, L. E., Sadeghi, S., and Thompson, M. Analyst 2005, 130, 1569-1576
12. Huo, H., Cheran, L. E., and Thompson, M., Kelvin physics of protein layers printed in microarray format. In New Approaches in Biomedical Spectroscopy; Kneipp, K., Aroca, R., Kneipp, H., and Wentrup-Byrne, E., Eds. American Chemical Society: Washington DC, 2007; pp 312 - 337.
13. Cavic, B. A., Hayward, G. L., and Thompson, M. Analyst 1999, 124, 1405-1420
14. Tsortos, A., Papadakis, G., Mitsakakis, K., Melzak, K. A., and Gizeli, E. Biophys. J. 2008, 94, 2706-2715
15. Su, X. D., Wu, Y. J., and Knoll, W. Biosens. Bioelectron. 2005, 21, 719-726
16. Zhang, J., Su, X. D., and O'Shea, S. J. Biophys. Chem. 2002, 99, 31-41
17. Peh, W. Y. X., Reimhult, E., Teh, H. F., Thomsen, J. S., and Su, X. D. Biophys. J. 2007, 92, 4415-4423
18. Stengel, G., Hook, F., and Knoll, W. Anal. Chem. 2005, 77, 3709-3714
19. Braunhut, S. J., McIntosh, D., Vorotnikova, E., Zhou, T., and Marx, K. A. Assay Drug Dev. Technol. 2005, 3, 77-88
20. Cheran, L. E., Cheung, S. L., Al Chawaf, A., Ellis, J. S., Belsham, D. D., MacKay, W. A., Lovejoy, D., and Thompson, M. Analyst 2007, 132, 242-255
21. Marx, K. A., Zhou, T., Montrone, A., Schulze, H., and Braunhut, S. J. Biosens. Bioelectron. 2001, 16, 773-82
22. Wang, X. M., Ellis, J. S., Kan, C. D., Li, R. K., and Thompson, M. Analyst 2008, 133, 85-92
23. Sheikh, S., Blaszykowski, C., and Thompson, M. Anal. Lett. 2008, 41, 2525-2538
24. Lyle, E.-L. E. Acoustic Coupling of Transverse Waves as a Mechanism for the Label-free Detection of Biomolecular Interactions; University of Toronto: Toronto, Canada, 2004.
25. Tassew, N. G. Characterization of the HIV-1 TAR RNA-Tat Peptide and Drug Interactions by On-line Acoustic Wave Sensor, Ph.D. Thesis, University of Toronto: Toronto, Canada, 2003.
26. Wang, X. Surface-attached Biomolecules and Cells Studied by Thickness Shear Mode Acoustic Wave Sensor; University of Toronto: Toronto, Canada, 2008.
27. Craig, V. S. J., Neto, C., and Williams, D. R. M. Phys. Rev. Lett. 2001, 8705, 054504
28. Neto, C., Craig, V. S. J., and Williams, D. R. M. Euro. Phys. J. E 2003, 12, S71-S74
29. Ferrante, F., Kipling, A. L., and Thompson, M. J. Appl. Phys. 1994, 76, 3448-3462
30. Sauerbrey, G. Z. Phys. 1959, 155, 206-222
31. Kanazawa, K. K. and Gordon, J. G. Anal. Chem. 1985, 57, 1770-1771
32. Martin, S. J., Granstaff, V. E., and Frye, G. C. Anal. Chem. 1991, 63, 2272-2281
33. Eggers, F. and Funck, T. J. Phys. E: Sci. Instrum. 1987, 20, 523-530
34. Johannsmann, D., Mathauer, K., Wegner, G., and Knoll, W. Phys. Rev. B 1992, 46, 7808-7815
35. Tessier, L., Patat, F., Schmitt, N., Lethiecq, M., Frangin, Y., and Guilloteau, D. Sens. Actuators B 1994, 19, 698-703
36. McHale, G., Lucklum, R., Newton, M. I., and Cowen, J. A. J. Appl. Phys. 2000, 88, 7304-7312
37. McHale, G., Newton, M. I., Banerjee, M. K., and Cowen, J. A. Mater. Sci. Eng., C 2000, 12, 17-22
38. Domack, A., Prucker, O., Ruhe, J., and Johannsmann, D. Phys. Rev. E 1997, 56, 680-689
39. Schreiber, F. Prog. Surf. Sci. 2000, 65, 151-257
40. Savage, M. D., Mattson, G., Surbhi, D., Nielander, G. W., Morgensen, S., and Conklin, E. J., Avidin-Biotin Chemistry: A Handbook; Pierce Chemical Company: Rockford, IL, 1992.
41. Ebersole, R. C., Miller, J. A., Moran, J. R., and Ward, M. D. J. Am. Chem. Soc. 1990, 112, 3239-3241
42. Ghafouri, S. and Thompson, M. Langmuir 1999, 15, 564-572
43. Gizeli, E., Liley, M., Lowe, C. R., and Vogel, H. Anal. Chem. 1997, 69, 4808-4813
44. Hays, H. C. W., Millner, P. A., and Prodromidis, M. I. Sens. Actuators B 2006, 114, 1064-1070
45. Storri, S., Santoni, T., Minunni, M., and Mascini, M. Biosens. Bioelectron. 1998, 13, 347-357
46. Tommoy, M., Baer, R. L., Spirasolomon, D., and Doherty, T. P. Anal. Chem. 1995, 67, 1510-1516
47. Dupont-Filliard, A., Billon, M., Livache, T., and Guillerez, S. Anal. Chim. Acta 2004, 515, 271-277
48. Furtado, L. M. and Thompson, M. Analyst 1998, 123, 1937-1945
49. Hianik, T., Wang, X., Andreev, S., Dolinnaya, N., Oretskaya, T., and Thompson, M. Analyst 2006, 131, 1161-1166
50. Su, H. B., Kallury, K. M. R., Thompson, M., and Roach, A. Anal. Chem. 1994, 66, 769-777
51. Hook, F., Voros, J., Rodahl, M., Kurrat, R., Boni, P., Ramsden, J. J., Textor, M., Spencer, N. D., Tengvall, P., Gold, J., and Kasemo, B. Colloid Surf. B 2002, 24, 155-170
52. Lubarsky, G. V., Davidson, M. R., and Bradley, R. H. Biosens. Bioelectron. 2007, 22, 1275-1281
53. Lyle, E. L., Hayward, G. L., and Thompson, M. Analyst 2002, 127, 1596-1600
54. Wang, X., Ellis, J. S., Lyle, E. L., Sundaram, P., and Thompson, M. Mol. Biosyst. 2006, 2, 184-192
55. Yang, M. S. and Thompson, M. Anal. Chim. Acta 1993, 282, 505-515
56. Furtado, L. M., Su, H. B., Thompson, M., Mack, D. P., and Hayward, G. L. Anal. Chem. 1999, 71, 1167-1175
57. Nisman, R. Immobilization and Characterization of Oligonucleotides on Functionalized Substrates; University of Toronto: Toronto, Canada, 2002.
58. Nardone, E., Rosano, C., Santambrogio, P., Curnis, F., Corti, A., Magni, F., Siccardi, A. G., Paganelli, G., Losso, R., Apreda, B., Bolognesi, M., Sidoli, A., and Arosio, P. Eur. J. Biochem. 1998, 256, 453-460
59. Huo, H. Kelvin Physics of Substrate-attached Protein Layers and Protein Microarrays; University of Toronto: Toronto, Canada, 2008.
60. Theisen, L. A., Martin, S. J., and Hillman, A. R. (2004, 76, 796 - 804.
61. Tsionsky, V., Kaverin, A., Daikhin, L., Katz, G., and Gileadi, E. Phys. Chem. Chem. Phys. 2005, 7, 1830-1835
62. Cho, J. H. J., Law, B. M., and Rieutord, F. Phys. Rev. Lett. 2004, 92
63. Pit, R., Hervet, H., and Leger, L. Tribol. Lett. 1999, 7, 147-152
64. Tretheway, D. C. and Meinhart, C. D. Phys. Fluids 2004, 16, 1509-1515
65. Zhu, Y. X. and Granick, S. Phys. Rev. Lett. 2002, 88, 106102
66. Bonaccurso, E., Butt, H. J., and Craig, V. S. J. Phys. Rev. Lett. 2003, 90, 144501
67. Bonaccurso, E., Kappl, M., and Butt, H. J. Phys. Rev. Lett. 2002, 88, 076103
68. Cottin-Bizonne, C., Jurine, S., Baudry, J., Crassous, J., Restagno, F., and Charlaix, E. Eur. Phys. J. E 2002, 9, 47-53
69. de Gennes, P. G. Langmuir 2002, 18, 3413-3414
70. Ellis, J. S. and Thompson, M. Phys. Chem. Chem. Phys. 2004, 6, 4928-4938
71. Granick, S., Zhu, Y. X., and Lee, H. Nat. Mater. 2003, 2, 221-227
72. Lichter, S., Roxin, A., and Mandre, S. Phys. Rev. Lett. 2004, 93, 086001
73. Neto, C., Evans, D. R., Bonaccurso, E., Butt, H.-J. r., and Craig, V. S. J. Rep. Prog. Phys. 2005, 68, 2859
74. Vinogradova, O. I. Int. J. Miner. Process. 1999, 56, 31-60
75. Navier, C. L. M. H. Mem. Acad. R. Sci. Inst. Fr. 1823, 6, 389-440
76. Barrat, J. L. and Bocquet, L. Phys. Rev. Lett. 1999, 82, 4671-4674
77. Baudry, J., Charlaix, E., Tonck, A., and Mazuyer, D. Langmuir 2001, 17, 5232-5236
78. Blake, T. D. Colloids Surf. 1990, 47, 135-145
79. Bocquet, L. and Barrat, J. L. Phys. Rev. Lett. 1993, 70, 2726-2729
80. Horn, R. G., Vinogradova, O. I., Mackay, M. E., and Phan-Thien, N. J. Chem. Phys. 2000, 112, 6424-6433
81. Israelachvili, J. N., Intermolecular and Surface Forces., 2 nd ed.; Academic Press: London, 1991; p 450.
82. Jabbarzadeh, A., Atkinson, J. D., and Tanner, R. I. J. Chem. Phys. 1999, 110, 2612-2620
83. Pit, R., Hervet, H., and Leger, L. Phys. Rev. Lett. 2000, 85, 980-983
84. Tolstoi, D. M. Dokl. Akad. Nauk SSSR 1952, 85, 1089-1092
85. Brochard, F. and de Gennes, P. G. Langmuir 1992, 8, 3033-3037
86. Leger, L., Hervet, H., Massey, G., and Durliat, E. J. Phys.-Condes. Matter 1997, 9, 7719-7740
87. Zhu, Y. X. and Granick, S. Phys. Rev. Lett. 2001, 87, 096105
88. Cottin-Bizonne, C., Barrat, J. L., Bocquet, L., and Charlaix, E. Nat. Mater. 2003, 2, 237-240
89. Daikhin, L., Gileadi, E., Katz, G., Tsionsky, V., Urbakh, M., and Zagidulin, D. Anal. Chem. 2002, 74, 554-561
90. Jabbarzadeh, A., Atkinson, J. D., and Tanner, R. I. Phys. Rev. E 2000, 61, 690-699
91. McHale, G. and Newton, M. I. J. Appl. Phys. 2004, 95, 373-380
92. Ponomarev, I. V. and Meyerovich, A. E. Phys. Rev. E 2003, 67, 026302
93. Carre, A., Gastel, J. C., and Shanahan, M. E. R. Nature 1996, 379, 432-434
94. Carre, A. and Shanahan, M. E. R. Langmuir 1995, 11, 24-26
95. Shanahan, M. E. R. and Carre, A. Langmuir 1995, 11, 1396-1402
96. Shanahan, M. E. R. and Carre, A. J. Adhes. 1996, 57, 179-189
97. Shanahan, M. E. R. and Carre, A. C. R. Acad. Sci. Ser. IV-Phys. Astrophys. 2000, 1, 263-268
98. Migler, K. B., Hervet, H., and Leger, L. Phys. Rev. Lett. 1993, 70, 287-290
99. Vinogradova, O. I. Langmuir 1996, 12, 5963-5968
100. Hayward, G. L. and Thompson, M. J. Appl. Phys. 1998, 83, 2194-2201
101. Ellis, J. S. and Hayward, G. L. J. Appl. Phys. 2003, 94, 7856-7867
102. Willmott, G. R. and Tallon, J. L. Phys. Rev. E 2007, 76, 066306
103. Rodahl, M. and Kasemo, B. Sens. Actuator A-Phys. 1996, 54, 448-456
104. Daikhin, L., Gileadi, E., Tsionsky, V., Urbakh, M., and Zilberman, G. Electrochim. Acta 2000, 45, 3615-3621
105. Du, B., Goubaidoulline, I., and Johannsmann, D. Langmuir 2004, 20, 10617-10624
106. Moré, J. J., Garbow, B. S., and Hillstrom, K. E., User Guide for MINPACK-1; Argonne National Laboratory: Argonne, IL, 1980; Vol. Report ANL- 80 - 74.
107. Eaton, J. W., GNU Octave Manual; Network Theory Limited: Surrey, UK, 2002.
108. Eaton, J. W. Octave, 2007.
109. Anzai, J. and Nakamura, N. J. Chem. Soc., Perkin Trans. 2 1999, 2413-2414
110. Cosnier, S., Perrot, H., and Wessel, R. Electroanalysis 2001, 13, 971-974
111. Tassew, N. and Thompson, M. Anal. Chem. 2002, 74, 5313-5320
112. Wu, X. Y., Levenston, M. E., and Chaikof, E. L. Biomaterials 2006, 27, 5315-5325
113. Persson, B. N. J., Sliding Friction: Physical Principles and Applications, 2 nd ed.; Springer: Berlin, 2000; p 515.
114. Weber, N., Pesnell, A., Bolikal, D., Zeltinger, J., and Kohn, J. Langmuir 2007, 23, 3298-3304
115. Malmstrom, J., Agheli, H., Kingshott, P., and Sutherland, D. S. Langmuir 2007, 23, 9760-9768
116. Dutta, A. K., Nayak, A., and Belfort, G. J. Colloid Interface Sci. 2008, 324, 55-60
117. Vinogradova, O. I. Langmuir 1998, 14, 2827-2837
118. Su, X. and Zhang, J. Sens. Actuators B 2004, 100, 309 - 314.