Understanding ligand binding effects on the conformation of estrogen receptor α-DNA complexes: A combinational quartz crystal microbalance with dissipation and surface plasmon resonance study

Biophysical Journal

Volumn 92, Issue 12, 2007, Pages 4415-4423

  Peh, Wendy Y X ^a   Reimhult, Erik ^b   Huey, Fang Teh ^a   Thomsen, Jane S ^c   Su, Xiaodi ^a  

^a INSTITUTE OF MATERIALS RESEARCH AND ENGINEERING   (Singapore)

^b ETH ZURICH   (Switzerland)

^c GENOME INSTITUTE OF SINGAPORE   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

4 HYDROXYTAMOXIFEN; DNA; ESTRADIOL; ESTROGEN RECEPTOR ALPHA;

ARTICLE; LIGAND BINDING; SURFACE PLASMON RESONANCE; VISCOELASTICITY;

EID: 34250323898     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.106.099382     Document Type: Article

References (48)

1. Deroo, B. J., and K. S. Korach. 2006. Estrogen receptors and human disease. J. Clin. Invest. 116:561-570.
2. Green, P. S., and J. W. Simpkins. 2000. Neuroprotective effects of estrogen: potential mechanisms of action. Int. J. Devl. Neurosci. 18:347-358.
3. Jansson, L., and R. Holmdahl. 1998. Estrogen-mediated immunosupression in autoimmune diseases. Inflamm. Res. 47:290-301.
4. Kraichely, D. M., J. Sun, J. A. Katzenellenbogen, and B. S. Katzenellenbogen. 2000. Conformational changes and coactivator recruitment by novel ligands for estrogen receptor-α and estrogen receptor-β: correlations with biological character and distinct differences among SRC coactivator family members. Endocrinology. 141:3534-3545.
5. Devin-Leclerc, J., X. Meng, F. Delahaye, P. Leclerc, E. Baulieu, and M. Catelli. 1998. Interaction and dissociation by ligands of estrogen receptor and Hsp90: the antiestrogen RU 58668 induces a protein synthesis-dependent clustering of the receptor in the cytoplasm. Mol. Endocrinol. 12:842-854.
6. Wang, H., G. A. Peters, X. Zeng, M. Tang, W. Ip, and S. A. Khans. 1995. Yeast two-hybrid system demonstrates that estrogen receptor dimerization is ligand-dependent in vivo. J. Biol. Chem. 270:23322-23329.
7. Zilliacus, J., A. P. H. Wright, J. Carlstedt-Duke, and J. Gustafsson. 1995. Structural determinants of DNA-binding specificity by steroid receptors. Mol. Endocrinol. 9:389-400.
8. Klinge, C. M. 2001. Estrogen receptor interaction with estrogen response elements. Nucleic Acids Res. 29:2905-2919.
9. Muramatsu, M., and S. Inoue. 2000. Estrogen receptors: how do they control reproductive and nonreproductive functions? Biochem. Biophys. Res. Commun. 270:1-10.
10. Klinge, C. M. 2000. Estrogen receptor interaction with co-activators and co-repressors. Steriods. 65:227-251.
11. Brzozowski, A. M., A. C. W. Pike, Z. Dauter, R. E. Hubbard, T. Bonn, O. Engström, L. Öhman, G. L. Greene, J. Gustafsson, and M. Carlquist. 1997. Molecular basis of agonism and antagonism in the oestrogen receptor. Nature. 389:753-758.
12. Shiau, A. K., D. Barstad, P. M. Loria, L. Cheng, P. J. Kushner, D. A. Agard, and G. L. Greene. 1998. The structural basis of estrogen receptor/coactivator recognition and the antagonism of this interaction by tamoxifen. Cell. 95:927-937.
13. 19F NMR. Biochem. Biophys. Res. Commun. 270:988-991.
14. Yi, P., M. D. Driscoll, J. Huang, S. Bhagat, R. Hilf, R. A. Bambara, and M. Muyan. 2002. The effects of estrogen-responsive element- and ligand-induced structural changes on the recruitment of cofactors and transcriptional responses by ERα and ERβ. Mol. Endocrinol. 16:674-693.
15. Metzger, D., M. Berry, S. Ali, and P. Chambon. 1995. Effect of antagonists on DNA binding properties of the human estrogen receptor in vitro and in vivo. Mol. Endocrinol. 9:579-591.
16. Wood, J. R., G. L. Greene, and A. M. Nardulli. 1998. Estrogen response elements function as allosteric modulators of estrogen receptor conformation. Mol. Cell. Biol. 18:1927-1934.
17. Wood, J. R., V. S. Likhite, M. A. Loven, and A. M. Nardulli. 2001. Allosteric modulation of estrogen receptor conformation by different estrogen response elements. Mol. Endocrinol. 15:1114-1126.
18. Geserick, C., H. Meyer, and B. Haendler. 2005. The role of DNA response elements as allosteric modulators of steroid receptor function. Mol. Cell. Endocrinol. 236:1-7.
19. Brewer, S. H., W. R. Glomm, M. C. Johnson, M. K. Knag, and S. Franzen. 2005. Probing BSA binding to citrate-coated gold nanoparticles and surfaces. Langmuir. 21:9303-9307.
20. Höök, F., M. Rodahl, B. Kasemo, and P. Brzezinski. 1998. Structural changes in hemoglobin during adsorption to solid surfaces: effects of pH, ionic strength, and ligand binding. Proc. Natl. Acad. Sci. USA (Biophysics). 95:12271-12276.
21. Höök, F., and B. Kasemo. 2001. Variations in coupled water, viscoelastic properties, and film thickness of a Mefp-1 protein film during adsorption and cross-linking: a quartz crystal microbalance with dissipation monitoring, ellipsometry, and surface plasmon resonance study. Anal. Chem. 73:5796-5804.
22. Stengel, G., F. Höök, and W. Knoll. 2005. Viscoelastic modeling of template-directed DNA synthesis. Anal. Chem. 77:3709-3714.
23. Morigaki, K., and K. Tawa. 2006. Vesicle fusion studied by surface plasmon resonance and surface plasmon fluorescence spectroscopy. Biophys. J. 91:1380-1387.
24. Svedhem, S., D. Dahlborg, J. Ekeroth, J. Kelly, F. Hȯök, and J. Gold. 2003. In situ peptide-modified supported lipid bilayers for controlled cell attachment. Langmuir. 19:6730-6736.
25. 2. Anal. Chem. 75:5080-5087.
26. Su, X. D., Y. J. Wu, and W. Knoll. 2005. Comparison of surface plasmon resonance spectroscopy and quartz crystal microbalance techniques for studying DNA assembly and hybridization. Biosens. Bioelectron. 21:719-726.
27. Reimhult, E., C. Larsson, B. Kasemo, and F. Höök. 2004. Simultaneous surface plasmon resonance and quartz crystal microbalance with dissipation monitoring measurements of biomolecular adsorption events involving structural transformations and variations in coupled water. Anal. Chem. 76:7211-7220.
28. Zelander, G. 2006. QCM-D real-time monitoring of structural changes in an adsorbed protein layer. Nat. Methods. Application Notes:an41-an42.
29. Klein-Hitpass, L., G. U. Ryffel, E. Heitlinger, and A. B. C. Cato. 1998. A 13 bp palindrome is a functional estrogen responsive element and interacts specifically with estrogen receptor. Nucleic Acids Res. 16:647-663.
30. Su, X. D., R. Robelek, Y. J. Wu, and W. Knoll. 2004. Detection of point mutation and insertion mutations in DNA using a quartz crystal microbalance and MutS, a mismatch binding protein. Anal. Chem. 76:489-494.
31. User Manual for Autolab ESPRIT, Version 2. 2002. Chapter 7, p. 105.
32. de Feijter, J. A., J. Benjamins, and F. A. Veer. 1978. Ellipsometry as a tool to study the adsorption behavior of synthetic and biopolymers at the air-water interface. Biopolymers. 17:1759-1772.
33. Voinova, M. V., M. Rodahl, M. Jonson, and B. Kasemo. 1999. Viscoelastic acoustic response of layered polymer films at fluid-solid interfaces: continuum mechanics approach. Phys. Scr. 59:391-396.
34. Höök, F., M. Rodahl, P. Brzezinski, and B. Kasemo. 1998. Energy dissipation kinetics for protein and antibody-antigen adsorption under shear oscillation on a quartz crystal microbalance. Langmuir. 14:729-734.
35. Zhou, C., J. M. Friedt, A. Angelova, K. H. Choi, W. Laureyn, F. Frederix, L. A. Francis, A. Campitelli, Y. Engelborghs, and G. Borghs. 2004. Human immunoglobin adsorption investigated by means of quartz crystal microbalance dissipation, atomic force microscopy and surface acoustic wave, and surface plasmon resonance techniques. Langmuir. 20:5870-5878.
36. Schwabe, J. W. R., L. C. Chapman, J. T. Finch, D. Rhodes, and D. Neuhaus. 1993. DNA recognition by the oestrogen receptor: from solution to the crystal. Structure. 15:187-204.
37. Greenfield, N., V. Vijayanathan, T. J. Thomas, M. A. Gallo, and T. Thomas. 2001. Increase in the stability and helical content of estrogen receptor α in the presence of the estrogen response elements: analysis by circular dichroism spectroscopy. Biochemistry. 40:6646-6652.
38. Nardulli, A. M., G. L. Greene, and D. J. Shapiro. 1993. Human estrogen receptor bound to an estrogen response element bends DNA. Mol. Endocrinol. 7:331-340.
39. Sabbah, M., S. L. Ricousse, G. Redeuilh, and E. E. Baulieu. 1992. Estrogen receptor-induced bending of the Xenopus vitellogenin A2 gene hormone response element. Biochem. Biophys. Res. Commun. 185:944-952.
40. Günther, S., K. Rother, and C. Frömmel. 2006. Molecular flexibility in protein-DNA interactions. Biosystems. 85:126-136.
41. Spolar, R. S., and M. T. Jr. Record. 1994. Coupling of local folding to site-specific binding of proteins to DNA. Science. 263:777-784.
42. Kalodimos, C. G., N. Byres, A. M. J. J. Bonvin, M. M. Levandoski, M. Guennuegues, R. Boelens, and R. Kaptein. 2004. Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes. Science. 305:386-398.
43. Ozers, M. S., J. J. Hill, K. Ervin, J. R. Wood, A. M. Nardulli, C. A. Royer, and J. Gorski. 1997. Equilibrium binding of estrogen receptor with DNA using fluorescence anisotropy. J. Biol. Chem. 272:30405-30411.
44. Kosztin, D., T. C. Bishop, and K. Schulten. 1997. Binding of the estrogen receptor to DNA. The role of waters. Biophys. J. 73:557-570.
45. Höök, M., J. Rodahl, R. Vörös, P. Kurrat, J. J. Böni, M. Ramsden, N. D. Textor, P. Spencer, J. Tengvall, B. Gold, and B. Kasemo. 2002. A comparative study of protein adsorption on titanium oxide surfaces using in situ ellipsometry, optical waveguide lightmode spectroscopy, and the quartz crystal microbalance/dissipation. Colloids Surf. B Biointerfaces. 24:155-170.
46. Teh, H. F., W. Y. X. Peh, X. D. Su, and J. S. Thomsen. 2006. Characterization of protein-DNA interactions using surface plasmon resonance spectroscopy with various assay schemes. Biochemistry. 46:2127-2135.
47. Boyer, M., N. Poujol, E. Margeat, and C. A. Royer. 2000. Quantitative characterization of the interaction between purified human estrogen receptor α and DNA using fluorescence anisotropy. Nucleic Acids Res. 28:2494-2502.
48. Margeat, E., A. Bourdoncle, R. Margueron, N. Poujol, V. Cavaillès, and C. A. Royer. 2003. Ligands differentially modulate the protein interactions of the human estrogen receptors α and β. J. Mol. Biol. 326:77-92.