-
1
-
-
0037079054
-
Computational systems biology
-
Kitano H. Computational systems biology. Nature 2002, 420:206-210.
-
(2002)
Nature
, vol.420
, pp. 206-210
-
-
Kitano, H.1
-
3
-
-
28544440364
-
Reconstruction of genetic circuits
-
Sprinzak D., Elowitz M.B. Reconstruction of genetic circuits. Nature 2005, 438:443-448.
-
(2005)
Nature
, vol.438
, pp. 443-448
-
-
Sprinzak, D.1
Elowitz, M.B.2
-
4
-
-
66149172363
-
Diversity-based, model-guided construction of synthetic gene networks with predicted functions
-
Ellis T., Wang X., Collins J.J. Diversity-based, model-guided construction of synthetic gene networks with predicted functions. Nat. Biotechnol. 2009, 27:465-471.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 465-471
-
-
Ellis, T.1
Wang, X.2
Collins, J.J.3
-
6
-
-
0038441327
-
Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation
-
Elena S.F., Lenski R.E. Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat. Rev. Genet. 2003, 4:457-469.
-
(2003)
Nat. Rev. Genet.
, vol.4
, pp. 457-469
-
-
Elena, S.F.1
Lenski, R.E.2
-
7
-
-
0347635508
-
Design of genetic networks with specified functions by evolution in silico
-
François P., Hakim V. Design of genetic networks with specified functions by evolution in silico. Proc. Natl. Acad. Sci. U. S. A. 2004, 101:580-585.
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 580-585
-
-
François, P.1
Hakim, V.2
-
8
-
-
31744434938
-
Modelling the evolution of genetic regulatory networks
-
Quayle A.P., Bullock S. Modelling the evolution of genetic regulatory networks. J. Theor. Biol. 2006, 238:737-753.
-
(2006)
J. Theor. Biol.
, vol.238
, pp. 737-753
-
-
Quayle, A.P.1
Bullock, S.2
-
11
-
-
0039196011
-
Using classifier systems to study adaptive nonlinear networks
-
Addison-Wesley, Reading MA, D.L. Stein (Ed.)
-
Holland J.H. Using classifier systems to study adaptive nonlinear networks. Lect Sci Complex 1989, Addison-Wesley, Reading MA. D.L. Stein (Ed.).
-
(1989)
Lect Sci Complex
-
-
Holland, J.H.1
-
15
-
-
0028508268
-
Genetic and genetic/simulated-annealing approaches to economic dispatch
-
Wong K.P., Wong Y.W. Genetic and genetic/simulated-annealing approaches to economic dispatch. IEE Proc. Gener. Transm. Distrib. 1994, 141:507-513.
-
(1994)
IEE Proc. Gener. Transm. Distrib.
, vol.141
, pp. 507-513
-
-
Wong, K.P.1
Wong, Y.W.2
-
16
-
-
0024991769
-
Correlated and uncorrelated fitness landscapes and how to tell the difference
-
Weinberger E.D. Correlated and uncorrelated fitness landscapes and how to tell the difference. Biol. Cybern 1990, 63:325-336.
-
(1990)
Biol. Cybern
, vol.63
, pp. 325-336
-
-
Weinberger, E.D.1
-
17
-
-
34547861255
-
Genetdes: automatic design of transcriptional networks
-
Rodrigo G., Carrera J., Jaramillo A. Genetdes: automatic design of transcriptional networks. Bioinformatics 2007, 23:1857-1858.
-
(2007)
Bioinformatics
, vol.23
, pp. 1857-1858
-
-
Rodrigo, G.1
Carrera, J.2
Jaramillo, A.3
-
19
-
-
0030017289
-
Punctuated evolution caused by selection of rare beneficial mutations
-
Elena S.F., Cooper V.S., Lenski R.E. Punctuated evolution caused by selection of rare beneficial mutations. Science 1996, 272:1802-1804.
-
(1996)
Science
, vol.272
, pp. 1802-1804
-
-
Elena, S.F.1
Cooper, V.S.2
Lenski, R.E.3
-
20
-
-
46249108209
-
Computational design of digital and memory biological devices
-
Rodrigo G., Jaramillo A. Computational design of digital and memory biological devices. Syst. Synth. Biol. 2007, 1:183-195.
-
(2007)
Syst. Synth. Biol.
, vol.1
, pp. 183-195
-
-
Rodrigo, G.1
Jaramillo, A.2
-
21
-
-
84860513120
-
Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli
-
Batt G., Ropers D., de Jong H., et al. Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli. Bioinformatics 2005, 21:i19-i28.
-
(2005)
Bioinformatics
, vol.21
-
-
Batt, G.1
Ropers, D.2
de Jong, H.3
-
22
-
-
45549085296
-
Predictive behavior within microbial genetic networks
-
Tagkopoulos I., Liu Y., Tavazoie S. Predictive behavior within microbial genetic networks. Science 2008, 320:1313-1317.
-
(2008)
Science
, vol.320
, pp. 1313-1317
-
-
Tagkopoulos, I.1
Liu, Y.2
Tavazoie, S.3
-
23
-
-
33746593012
-
In silico evolution of functional modules in biochemical networks
-
Paladugu S.R., Chickarmane V., Deckard A., et al. In silico evolution of functional modules in biochemical networks. IEE Proc. Syst. Biol. 2006, 153:223-235.
-
(2006)
IEE Proc. Syst. Biol.
, vol.153
, pp. 223-235
-
-
Paladugu, S.R.1
Chickarmane, V.2
Deckard, A.3
-
24
-
-
40149093604
-
Evolution of complex modular biological networks
-
Hintze A., Adami C. Evolution of complex modular biological networks. PLoS Comput. Biol. 2008, 4:e23.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Hintze, A.1
Adami, C.2
-
26
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Elowitz M.B., Leibler S. A synthetic oscillatory network of transcriptional regulators. Nature 2000, 403:335-338.
-
(2000)
Nature
, vol.403
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
27
-
-
44449096511
-
In silico evolution of the oscillatory response under light-dark cycles
-
Rodrigo G., Carrera J., Jaramillo A. In silico evolution of the oscillatory response under light-dark cycles. Biochimie 2008, 90:888-897.
-
(2008)
Biochimie
, vol.90
, pp. 888-897
-
-
Rodrigo, G.1
Carrera, J.2
Jaramillo, A.3
-
28
-
-
42549159572
-
OptCircuit: an optimization based method for computational design of genetic circuits
-
Dasika M.S., Maranas C.D. OptCircuit: an optimization based method for computational design of genetic circuits. BMC Syst. Biol. 2008, 2:24.
-
(2008)
BMC Syst. Biol.
, vol.2
, pp. 24
-
-
Dasika, M.S.1
Maranas, C.D.2
-
29
-
-
37349116795
-
Deriving structure from evolution: metazoan segmentation
-
François P., Hakim V., Siggia E.D. Deriving structure from evolution: metazoan segmentation. Mol. Syst. Biol. 2007, 3:154.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 154
-
-
François, P.1
Hakim, V.2
Siggia, E.D.3
-
30
-
-
7644238181
-
Biological robustness
-
Kitano H. Biological robustness. Nat. Rev. Genet. 2004, 5:826-837.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 826-837
-
-
Kitano, H.1
-
31
-
-
25444448797
-
Spontaneous evolution of modularity and network motifs
-
Kashtan N., Alon U. Spontaneous evolution of modularity and network motifs. Proc. Natl. Acad. Sci. U. S. A. 2005, 102:13773-13778.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 13773-13778
-
-
Kashtan, N.1
Alon, U.2
-
32
-
-
65249191306
-
Distributed robustness in cellular networks: insights from synthetic evolved circuits
-
Maciá J., Solé R.V. Distributed robustness in cellular networks: insights from synthetic evolved circuits. J. R. Soc. Interface 2009, 6:393-400.
-
(2009)
J. R. Soc. Interface
, vol.6
, pp. 393-400
-
-
Maciá, J.1
Solé, R.V.2
-
33
-
-
77953539177
-
-
Adapting weighted aggregation for multi-objective evolution strategies, in: Proc I Int Conf Evol multi-Crit Optim, Lect Not. Comp. Sci. 1993.
-
Y. Sin, T. Okabe, B. Sendhorf, Adapting weighted aggregation for multi-objective evolution strategies, in: Proc I Int Conf Evol multi-Crit Optim, Lect Not. Comp. Sci. 1993, 2001, pp. 96-110.
-
(2001)
, pp. 96-110
-
-
Sin, Y.1
Okabe, T.2
Sendhorf, B.3
-
34
-
-
0031223521
-
Genetic algorithms with a robust solution searching scheme
-
Tsutsui S., Ghosh A. Genetic algorithms with a robust solution searching scheme. IEEE Trans. Evol. Comput. 1997, 1:201-208.
-
(1997)
IEEE Trans. Evol. Comput.
, vol.1
, pp. 201-208
-
-
Tsutsui, S.1
Ghosh, A.2
-
36
-
-
54249124501
-
Learning biological networks: from modules to dynamics
-
Bonneau R. Learning biological networks: from modules to dynamics. Nat. Chem. Biol. 2008, 4:658-664.
-
(2008)
Nat. Chem. Biol.
, vol.4
, pp. 658-664
-
-
Bonneau, R.1
-
37
-
-
33947640043
-
Prediction of phenotype and gene expression for combinations of mutations
-
Carter G.W., Prinz S., Neou C., et al. Prediction of phenotype and gene expression for combinations of mutations. Mol. Syst. Biol. 2007, 3:96.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 96
-
-
Carter, G.W.1
Prinz, S.2
Neou, C.3
-
39
-
-
42249098422
-
Evolvability and hierarchy in rewired bacterial gene networks
-
Isalan M., Lemerle C., Michalodimitrakis K., et al. Evolvability and hierarchy in rewired bacterial gene networks. Nature 2008, 452:840-845.
-
(2008)
Nature
, vol.452
, pp. 840-845
-
-
Isalan, M.1
Lemerle, C.2
Michalodimitrakis, K.3
-
40
-
-
46949091517
-
Refinement and standardization of synthetic biological parts and devices
-
Canton B., Labno A., Endy D. Refinement and standardization of synthetic biological parts and devices. Nat. Biotechnol. 2008, 26:787-793.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 787-793
-
-
Canton, B.1
Labno, A.2
Endy, D.3
-
42
-
-
62649122977
-
Synthetic metabolism: engineering biology at the protein and pathway scales
-
Martin C.H., Nielsen D.R., Solomon K.V., et al. Synthetic metabolism: engineering biology at the protein and pathway scales. Chem. Biol. 2009, 16:277-286.
-
(2009)
Chem. Biol.
, vol.16
, pp. 277-286
-
-
Martin, C.H.1
Nielsen, D.R.2
Solomon, K.V.3
-
43
-
-
0033538531
-
Fundamentally different logic of gene regulation in eukaryotes and prokaryotes
-
Struhl K. Fundamentally different logic of gene regulation in eukaryotes and prokaryotes. Cell 1999, 98:1-45.
-
(1999)
Cell
, vol.98
, pp. 1-45
-
-
Struhl, K.1
-
44
-
-
66649105445
-
Synthesis of orthogonal transcription-translation networks
-
An W., Chin J.W. Synthesis of orthogonal transcription-translation networks. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:8477-8482.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 8477-8482
-
-
An, W.1
Chin, J.W.2
|