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Volumn 6, Issue 33, 2009, Pages 393-400

Distributed robustness in cellular networks: Insights from synthetic evolved circuits

Author keywords

Degeneracy; Evolvable hardware; Fault tolerance; Redundancy; Robustness

Indexed keywords

CELLULAR NEURAL NETWORKS; CELLULAR TELEPHONE SYSTEMS; FAULT TOLERANCE; FAULT TOLERANT COMPUTER SYSTEMS; NETWORKS (CIRCUITS); REDUNDANCY;

EID: 65249191306     PISSN: 17425689     EISSN: 17425662     Source Type: Journal    
DOI: 10.1098/rsif.2008.0236     Document Type: Article
Times cited : (35)

References (46)
  • 2
    • 0033552946 scopus 로고    scopus 로고
    • Robustness in bacterial chemotaxis
    • DOI 10.1038/16483
    • Alon, U., Surette, M. G., Barkai, N. & Leibler, S. 1999 Robustness in bacterial chemotaxis. Nature 397, 168-171. (doi:10.1038/16483) (Pubitemid 29050922)
    • (1999) Nature , vol.397 , Issue.6715 , pp. 168-171
    • Alon, U.1    Surette, M.G.2    Barkai, N.3    Leibler, S.4
  • 4
    • 33746172998 scopus 로고    scopus 로고
    • The evolution of technology within a simple computer model
    • DOI 10.1002/cplx.20130
    • Arthur, W. B. & Polak, W. 2006 The evolution of technology within a simple computer model. Complexity 11, 23-31. (doi:10.1002/cplx.20130) (Pubitemid 44085007)
    • (2006) Complexity , vol.11 , Issue.5 , pp. 23-31
    • Arthur, W.B.1    Polak, W.2
  • 6
    • 0034208724 scopus 로고    scopus 로고
    • A developmental model for the evolution of artificial neural networks
    • doi:10.1162/106454600568834
    • Astor, J. C. & Adami, C. 2000 A developmental model for the evolution of artificial neural networks. Artif. Life 6, 189-218. (doi:10.1162/ 106454600568834)
    • (2000) Artif. Life , vol.6 , pp. 189-218
    • Astor, J.C.1    Adami, C.2
  • 7
    • 33846861909 scopus 로고    scopus 로고
    • Evolution on neutral networks in genetic programming
    • (eds T. Yu, R. Riolo & B. Worzel), Boston, MA: Kluwer Academic
    • Banzhaf, W. & Leier, A. 2006 Evolution on neutral networks in genetic programming. In Genetic programming-theory and applications III (eds T. Yu, R. Riolo & B. Worzel), pp. 207-221. Boston, MA: Kluwer Academic.
    • (2006) Genetic Programming-theory and Applications III , pp. 207-221
    • Banzhaf, W.1    Leier, A.2
  • 8
    • 0034703858 scopus 로고    scopus 로고
    • Robustness as an evolutionary principle
    • doi:10.1098/rspb.2000.1280
    • Bornholdt, S. & Sneppen, K. 2000 Robustness as an evolutionary principle. Proc. R. Soc. B 267, 2281-2286. (doi:10.1098/rspb.2000.1280)
    • (2000) Proc. R. Soc. B , vol.267 , pp. 2281-2286
    • Bornholdt, S.1    Sneppen, K.2
  • 9
    • 33947361606 scopus 로고    scopus 로고
    • Superstability of the yeast cell-cycle dynamics: Ensuring causality in the presence of biochemical stochasticity
    • doi:10.1016/j.jtbi.2006.11.012
    • Braunewell, S. & Bornholdt, S. 2007 Superstability of the yeast cell-cycle dynamics: ensuring causality in the presence of biochemical stochasticity. J. Theor. Biol. 245, 638-643. (doi:10.1016/j.jtbi.2006.11.012)
    • (2007) J. Theor. Biol. , vol.245 , pp. 638-643
    • Braunewell, S.1    Bornholdt, S.2
  • 10
    • 33847268619 scopus 로고    scopus 로고
    • Robustness can evolve gradually in complex regulatory gene networks with varying topology
    • DOI 10.1371/journal.pcbi.0030015
    • Ciliberti, S., Martin, O. C. & Wagner, A. 2007 Robustness can evolve gradually in complex regulatory gene networks with varying topology. PLoS Comp. Biol. 3, e15. (doi:10.1371/journal.pcbi.0030015) (Pubitemid 46318378)
    • (2007) PLoS Computational Biology , vol.3 , Issue.2 , pp. 164-173
    • Ciliberti, S.1    Martin, O.C.2    Wagner, A.3
  • 11
    • 0004257570 scopus 로고
    • New York, NY: Plenum Press
    • Conrad, M. 1983 Adaptability. New York, NY: Plenum Press.
    • (1983) Adaptability
    • Conrad, M.1
  • 13
    • 0035923604 scopus 로고    scopus 로고
    • Degeneracy and complexity in biological systems
    • doi:10.1073/pnas.231499798
    • Edelman, G. M. & Gally, J. A. 2001 Degeneracy and complexity in biological systems. Proc. Natl Acad. Sci. USA 98, 13 763-13 768. (doi:10.1073/pnas.231499798)
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 13763-13768
    • Edelman, G.M.1    Gally, J.A.2
  • 14
    • 33846867274 scopus 로고    scopus 로고
    • Neutral fitness landscapes in signaling networks
    • doi:10.1098/rsif.2006.0152
    • Fernandez, P. & Solé, R. V. 2007 Neutral fitness landscapes in signaling networks. J. R. Soc. Interface 4, 41-47. (doi:10.1098/rsif.2006.0152)
    • (2007) J. R. Soc. Interface , vol.4 , pp. 41-47
    • Fernandez, P.1    Solé, R.V.2
  • 15
    • 0037076498 scopus 로고    scopus 로고
    • Developmental evolution: Getting robust about robustness
    • doi:10.1016/S0960-9822(02)00855-2
    • Gibson, G. 2002 Developmental evolution: getting robust about robustness. Curr. Biol. 12, R347-R349. (doi:10.1016/S0960-9822(02)00855-2)
    • (2002) Curr. Biol. , vol.12
    • Gibson, G.1
  • 16
    • 0036139975 scopus 로고    scopus 로고
    • Computing an organism: On the interface between informatic and dynamic processes
    • DOI 10.1016/S0303-2647(01)00178-2, PII S0303264701001782
    • Hogeweg, P. 2002 Computing an organism: on the interface between informatic and dynamic processes. Biosystems 64, 97-109. (doi:10.1016/S0303- 2647(01)00178-2) (Pubitemid 34033601)
    • (2002) BioSystems , vol.64 , Issue.1-3 , pp. 97-109
    • Hogeweg, P.1
  • 17
    • 21744444391 scopus 로고    scopus 로고
    • Machine Learning Approach to Gate-Level Evolvable Hardware
    • Evolvable Systems: From Biology to Hardware
    • Iba, H., Iwata, M. & Higuchi, T. 1997 Machine learning approach to gate-level evolvable hardware. In Proc. 1st Int. Conf. on Evolvable Systems: From Biology to Hardware (eds T. Higuchi, M. Iwata & W. Liu). Lecture Notes on Computer Science, no. 1259, pp. 327-343. London, UK: Springer. (Pubitemid 127097606)
    • (1997) LECTURE NOTES in COMPUTER SCIENCE , Issue.1259 , pp. 327-343
    • Iba, H.1    Iwata, M.2    Higuchi, T.3
  • 18
    • 1542607138 scopus 로고    scopus 로고
    • Jen, E. (ed.) New York, NY: Oxford University Press
    • Jen, E. (ed.) 2005 Robust design. New York, NY: Oxford University Press.
    • (2005) Robust Design
  • 19
    • 0014489272 scopus 로고
    • Metabolic stability and epigenesis in randomly constructed genetic nets
    • doi:10.1016/0022-5193(69)90015-0
    • Kauffman, S. A. 1962 Metabolic stability and epigenesis in randomly constructed genetic nets. J. Theor. Biol. 22, 437-467. (doi:10.1016/0022- 5193(69)90015-0)
    • (1962) J. Theor. Biol. , vol.22 , pp. 437-467
    • Kauffman, S.A.1
  • 21
    • 0345598902 scopus 로고    scopus 로고
    • Random Boolean network models and the yeast transcriptional network
    • doi:10.1073/pnas.2036429100
    • Kauffman, S. A., Peterson, C., Samuelsson, S. & Troein, C. 2003 Random Boolean network models and the yeast transcriptional network. Proc. Natl Acad. Sci. USA 100, 14 796-14 799. (doi:10.1073/pnas.2036429100)
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 14796-14799
    • Kauffman, S.A.1    Peterson, C.2    Samuelsson, S.3    Troein, C.4
  • 22
    • 29444440886 scopus 로고    scopus 로고
    • Topology of biological networks and reliability of information processing
    • doi:10.1073/pnas.0509132102
    • Klemm, K. & Bornholdt, S. 2005 Topology of biological networks and reliability of information processing. Proc. Natl Acad. Sci. USA 102, 18 414. (doi:10.1073/pnas.0509132102)
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 18414
    • Klemm, K.1    Bornholdt, S.2
  • 24
    • 0037022396 scopus 로고    scopus 로고
    • Redundancy, antiredundancy and the robustness of genomes
    • doi:10.1073/pnas.032668599
    • Krakauer, D. & Plotkin, J. 2002 Redundancy, antiredundancy and the robustness of genomes. Proc. Natl Acad. Sci. USA 99, 1405-1409. (doi:10.1073/pnas.032668599)
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 1405-1409
    • Krakauer, D.1    Plotkin, J.2
  • 25
    • 0038668776 scopus 로고    scopus 로고
    • The evolutionary origin of complex features
    • DOI 10.1038/nature01568
    • Lenski, R. E., Ofria, C., Pennock, R. T. & Adami, C. 2003 The evolutionary origin of complex features. Nature 423, 139-144. (doi:10.1038/nature01568) (Pubitemid 36569531)
    • (2003) Nature , vol.423 , Issue.6936 , pp. 139-144
    • Lenski, R.E.1    Ofria, C.2    Pennock, R.T.3    Adami, C.4
  • 26
    • 1842687878 scopus 로고    scopus 로고
    • The yeast cell-cycle network is robustly designed
    • doi:10.1073/pnas.0305937101
    • Li, F., Long, T., Lu, Y., Ouyang, Q. & Tang, C. 2004 The yeast cell-cycle network is robustly designed. Proc. Natl Acad. Sci. USA 101, 4781-4786. (doi:10.1073/pnas.0305937101)
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 4781-4786
    • Li, F.1    Long, T.2    Lu, Y.3    Ouyang, Q.4    Tang, C.5
  • 27
    • 0028500365 scopus 로고
    • Gene targeting in the mouse
    • doi:10.1002/bies.950160907
    • Melton, D. W. 1994 Gene targeting in the mouse. Bioessays 16, 633-638. (doi:10.1002/bies.950160907)
    • (1994) Bioessays , vol.16 , pp. 633-638
    • Melton, D.W.1
  • 28
    • 0032555224 scopus 로고    scopus 로고
    • Dynamics of the genetic regulatory network for Arabidopsis thaliana flower morphogenesis
    • doi:10.1006/jtbi.1998.0701
    • Mendoza, L. & Alvarez-Buylla, E. R. 1998 Dynamics of the genetic regulatory network for Arabidopsis thaliana flower morphogenesis. J. Theor. Biol. 193, 307-319. (doi:10.1006/jtbi.1998.0701)
    • (1998) J. Theor. Biol. , vol.193 , pp. 307-319
    • Mendoza, L.1    Alvarez-Buylla, E.R.2
  • 29
    • 0032879544 scopus 로고    scopus 로고
    • Genetic control of flower morphogenesis in Arabidopsis thaliana: A logical analysis
    • Mendoza, L., Thieffry, D. & Alvarez-Buylla, E. R. 1999 Genetic control of flower morphogenesis in Arabidopsis thaliana: a logical analysis. Bioinformatics 15, 593-606. (doi:10.1093/bioinformatics/15.7.593) (Pubitemid 29462108)
    • (1999) Bioinformatics , vol.15 , Issue.7-8 , pp. 593-606
    • Mendoza, L.1    Thieffry, D.2    Alvarez-Buylla, E.R.3
  • 31
    • 66749187999 scopus 로고    scopus 로고
    • Miller, J., Thompson, A., Thompson, P. & Fogarty, T. (eds) Proc. 3rd Int. Conf. on Evolvable Systems: From Biology to Hardware. Berlin, Germany: Springer
    • Miller, J., Thompson, A., Thompson, P. & Fogarty, T. (eds) 2000 Proc. 3rd Int. Conf. on Evolvable Systems: From Biology to Hardware. Lecture Notes on Computer Science, no. 1801. Berlin, Germany: Springer.
    • (2000) Lecture Notes on Computer Science , vol.1801
  • 32
    • 3242729569 scopus 로고    scopus 로고
    • Quantitative analysis of signaling networks
    • doi:10.1016/j.pbiomolbio.2004.03.002
    • Sauro, H. H. & Khodolenko, B. N. 2004 Quantitative analysis of signaling networks. Prog. Biophys. Mol. Biol. 86, 5-43. (doi:10.1016/j. pbiomolbio.2004.03.002)
    • (2004) Prog. Biophys. Mol. Biol. , vol.86 , pp. 5-43
    • Sauro, H.H.1    Khodolenko, B.N.2
  • 33
    • 5644289657 scopus 로고    scopus 로고
    • Engineering in the biological substrate: Information processing in genetic circuits
    • doi:10.1109/JPROC.2004.826600
    • Simpson, M. L., Cox, C. D., Peterson, G. D. & Sayler, G. S. 2004 Engineering in the biological substrate: information processing in genetic circuits. Proc. IEEE 92, 848-863. (doi:10.1109/JPROC.2004.826600)
    • (2004) Proc. IEEE , vol.92 , pp. 848-863
    • Simpson, M.L.1    Cox, C.D.2    Peterson, G.D.3    Sayler, G.S.4
  • 35
    • 33745998748 scopus 로고    scopus 로고
    • Are network motifs the spandrels of cellular complexity?
    • DOI 10.1016/j.tree.2006.05.013, PII S0169534706001674
    • Solé, R. V. & Valverde, S. 2006 Are network motifs the spandrels of cellular complexity? Trends Ecol. Evol. 21, 419-422. (doi:10.1016/j.tree.2006.05.013) (Pubitemid 44066622)
    • (2006) Trends in Ecology and Evolution , vol.21 , Issue.8 , pp. 419-422
    • Sole, R.V.1    Valverde, S.2
  • 36
    • 36348960081 scopus 로고    scopus 로고
    • Spontaneous emergence of modularity in cellular networks
    • doi:10.1098/rsif.2007.1108
    • Solé, R. V. & Valverde, S. 2007 Spontaneous emergence of modularity in cellular networks. J. R. Soc. Interface 5, 129-133. (doi:10.1098/rsif.2007.1108)
    • (2007) J. R. Soc. Interface , vol.5 , pp. 129-133
    • Solé, R.V.1    Valverde, S.2
  • 37
    • 1642553332 scopus 로고    scopus 로고
    • Adaptive walks in a gene network model of morphogenesis: Insights into the Cambrian explosion
    • Solé, R. V., Fernandez, P. & Kauffman, S. A. 2003 Adaptive walks in a gene network model of morphogenesis: insights into the Cambrian explosion. Int. J. Dev. Biol. 47, 685-693.
    • (2003) Int. J. Dev. Biol. , vol.47 , pp. 685-693
    • Solé, R.V.1    Fernandez, P.2    Kauffman, S.A.3
  • 38
    • 0032401315 scopus 로고    scopus 로고
    • Complexity and coherence: Integrating information in the brain
    • doi:10.1016/S1364-6613(98)01259-5
    • Tononi, G., Edelman, G. M.&Sporns, O. 1998 Complexity and coherence: integrating information in the brain. Trends Cogn. Sci. 2, 474-484. (doi:10.1016/S1364-6613(98)01259-5)
    • (1998) Trends Cogn. Sci. , vol.2 , pp. 474-484
    • Tononi, G.1    Edelman, G.M.2    Sporns, O.3
  • 39
    • 0032980799 scopus 로고    scopus 로고
    • Measures of degeneracy and redundancy in biological networks
    • doi:10.1073/pnas.96.6.3257
    • Tononi, G., Sporns, O. & Edelman, G. M. 1999 Measures of degeneracy and redundancy in biological networks. Proc. Natl Acad. Sci. USA 96, 3257-3262. (doi:10.1073/pnas.96.6.3257)
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 3257-3262
    • Tononi, G.1    Sporns, O.2    Edelman, G.M.3
  • 40
    • 0003133883 scopus 로고
    • Probabilistic logics and the synthesis of reliable organisms from unreliable components
    • California Institute of Technology
    • von Neumann, J. 1952 Probabilistic logics and the synthesis of reliable organisms from unreliable components, pp. 43-98. Lecture Notes, California Institute of Technology.
    • (1952) Lecture Notes , pp. 43-98
    • Von Neumann, J.1
  • 42
  • 43
    • 1042282182 scopus 로고    scopus 로고
    • Genetic circuit building blocks for cellular computation, communications, and signal processing
    • doi:10.1023/A:1023307812034
    • Weiss, R., Basu, S., Hooshangi, S., Kalmbach, A., Karig, D., Mehreja, R. & Netravali, I. 2003 Genetic circuit building blocks for cellular computation, communications, and signal processing. Nat. Comput. 2, 47-84. (doi:10.1023/A:1023307812034)
    • (2003) Nat. Comput. , vol.2 , pp. 47-84
    • Weiss, R.1    Basu, S.2    Hooshangi, S.3    Kalmbach, A.4    Karig, D.5    Mehreja, R.6    Netravali, I.7
  • 44
    • 36248985686 scopus 로고    scopus 로고
    • Robustness and state-space structure of Boolean gene regulatory models
    • doi:10.1016/j.jtbi.2007.09.004
    • Willadsen, K. & Wiles, J. 2007 Robustness and state-space structure of Boolean gene regulatory models. J. Theor. Biol. 249, 749-765. (doi:10.1016/j.jtbi.2007.09.004)
    • (2007) J. Theor. Biol. , vol.249 , pp. 749-765
    • Willadsen, K.1    Wiles, J.2
  • 46
    • 84937413225 scopus 로고    scopus 로고
    • Neutrality and the Evolvability of Boolean Function Landscape
    • Genetic Programming 4th European Conference, EuroGP 2001 Lake Como, Italy, April 18-20, 2001 Proceedings
    • Yu, T. & Miller, J. F. 2001 Neutrality and the evolvability of Boolean function landscape. Lecture Notes in Computer Science, no. 2038, pp. 204-217. New York, NY: Springer. (Pubitemid 33255072)
    • (2001) LECTURE NOTES in COMPUTER SCIENCE , Issue.2038 , pp. 204-217
    • Yu, T.1    Miller, J.2


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