메뉴 건너뛰기




Volumn 41, Issue 3, 2010, Pages 212-223

Equivalence testing in microarray analysis: Similarities in the transcriptome of human atherosclerotic and nonatherosclerotic macrophages

Author keywords

Atherosclerosis; Macrophage heterogeneity; Molecular imaging; Pathway analysis

Indexed keywords

CHLORDANE; INTERLEUKIN 1 RECEPTOR BLOCKING AGENT; MESSENGER RNA; TRANSCRIPTOME;

EID: 77952917999     PISSN: 10948341     EISSN: 15312267     Source Type: Journal    
DOI: 10.1152/physiolgenomics.00193.2009     Document Type: Article
Times cited : (16)

References (57)
  • 2
    • 29244448340 scopus 로고    scopus 로고
    • Microarray data analysis: From disarray to consolidation and consensus
    • Allison DB, Cui X, Page GP, Sabripour M. Microarray data analysis: from disarray to consolidation and consensus. Nat Rev Genet 7: 55-65, 2006.
    • (2006) Nat Rev Genet , vol.7 , pp. 55-65
    • Allison, D.B.1    Cui, X.2    Page, G.P.3    Sabripour, M.4
  • 3
    • 84971580244 scopus 로고
    • Absence of evidence is not evidence of absence
    • Altman DG, Bland JM. Absence of evidence is not evidence of absence. BMJ Clin Res Ed 311: 485, 1995.
    • (1995) BMJ Clin Res Ed , vol.311 , pp. 485
    • Altman, D.G.1    Bland, J.M.2
  • 4
    • 0025787689 scopus 로고
    • Interleukin 1 receptor antagonist. A new member of the interleukin 1 family
    • Arend WP. Interleukin 1 receptor antagonist. A new member of the interleukin 1 family. J Clin Invest 88: 1445-1451, 1991.
    • (1991) J Clin Invest , vol.88 , pp. 1445-1451
    • Arend, W.P.1
  • 8
    • 0023522662 scopus 로고
    • Apolipoprotein CIISt. Michael. Familial apolipoprotein CII deficiency associated with premature vascular disease
    • Connelly PW, Maguire GF, Little JA. Apolipoprotein CIISt. Michael. Familial apolipoprotein CII deficiency associated with premature vascular disease. J Clin Invest 80: 1597-1606, 1987.
    • (1987) J Clin Invest , vol.80 , pp. 1597-1606
    • Connelly, P.W.1    Maguire, G.F.2    Little, J.A.3
  • 10
    • 0038124692 scopus 로고    scopus 로고
    • Interleukin-1 receptor antagonist (IL-1RN) genotype modulates the replicative capacity of human endothelial cells
    • Dewberry RM, Crossman DC, Francis SE. Interleukin-1 receptor antagonist (IL-1RN) genotype modulates the replicative capacity of human endothelial cells. Circ Res 92: 1285-1287, 2003.
    • (2003) Circ Res , vol.92 , pp. 1285-1287
    • Dewberry, R.M.1    Crossman, D.C.2    Francis, S.E.3
  • 12
    • 0038692119 scopus 로고    scopus 로고
    • Human housekeeping genes are compact
    • Eisenberg E, Levanon EY. Human housekeeping genes are compact. Trends Genet 19: 362-365, 2003.
    • (2003) Trends Genet , vol.19 , pp. 362-365
    • Eisenberg, E.1    Levanon, E.Y.2
  • 15
    • 33845975254 scopus 로고    scopus 로고
    • Macrophage heterogeneity and tissue lipids
    • Gordon S. Macrophage heterogeneity and tissue lipids. J Clin Invest 117: 89-93, 2007.
    • (2007) J Clin Invest , vol.117 , pp. 89-93
    • Gordon, S.1
  • 16
    • 36249032544 scopus 로고    scopus 로고
    • The macrophage: Past, present and future
    • Gordon S. The macrophage: past, present and future. Eur J Immunol 37, Suppl 1: S9-S17, 2007.
    • (2007) Eur J Immunol , vol.37 , Issue.SUPPL. 1
    • Gordon, S.1
  • 17
    • 28544446111 scopus 로고    scopus 로고
    • Monocyte and macrophage heterogeneity
    • Gordon S, Taylor PR. Monocyte and macrophage heterogeneity. Nat Rev Immunol 5: 953-964, 2005.
    • (2005) Nat Rev Immunol , vol.5 , pp. 953-964
    • Gordon, S.1    Taylor, P.R.2
  • 18
    • 30744448648 scopus 로고    scopus 로고
    • HIV-1 selectively infects a subset of nonmaturing BDCA1-positive dendritic cells in human blood
    • Granelli-Piperno A, Shimeliovich I, Pack M, Trumpfheller C, Steinman RM. HIV-1 selectively infects a subset of nonmaturing BDCA1-positive dendritic cells in human blood. J Immunol 176: 991-998, 2006.
    • (2006) J Immunol , vol.176 , pp. 991-998
    • Granelli-Piperno, A.1    Shimeliovich, I.2    Pack, M.3    Trumpfheller, C.4    Steinman, R.M.5
  • 19
    • 7444226814 scopus 로고    scopus 로고
    • Equivalence test in quantitative reverse transcription polymerase chain reaction: Confirmation of reference genes suitable for normalization
    • Haller F, Kulle B, Schwager S, Gunawan B, von Heydebreck A, Sultmann H, Fuzesi L. Equivalence test in quantitative reverse transcription polymerase chain reaction: confirmation of reference genes suitable for normalization. Anal Biochem 335: 1-9, 2004.
    • (2004) Anal Biochem , vol.335 , pp. 1-9
    • Haller, F.1    Kulle, B.2    Schwager, S.3    Gunawan, B.4    Von Heydebreck, A.5    Sultmann, H.6    Fuzesi, L.7
  • 20
    • 0027474061 scopus 로고
    • Molecular cloning of CD68, a human macrophage marker related to lysosomal glycoproteins
    • Holness CL, Simmons DL. Molecular cloning of CD68, a human macrophage marker related to lysosomal glycoproteins. Blood 81: 1607-1613, 1993.
    • (1993) Blood , vol.81 , pp. 1607-1613
    • Holness, C.L.1    Simmons, D.L.2
  • 22
    • 0043005476 scopus 로고    scopus 로고
    • Bioequivalence trials, intersection-union tests and equivalence confidence sets
    • Berger RL, Hsu JC. Bioequivalence trials, intersection-union tests and equivalence confidence sets. Stat Sci 11: 283-319, 1996.
    • (1996) Stat Sci , vol.11 , pp. 283-319
    • Berger, R.L.1    Hsu, J.C.2
  • 24
    • 1042290493 scopus 로고    scopus 로고
    • Recent developments in MHC-class-I-mediated antigen presentation
    • Lehner PJ, Cresswell P. Recent developments in MHC-class-I-mediated antigen presentation. Curr Opin Immunol 16: 82-89, 2004.
    • (2004) Curr Opin Immunol , vol.16 , pp. 82-89
    • Lehner, P.J.1    Cresswell, P.2
  • 26
    • 33747822578 scopus 로고    scopus 로고
    • Advances in detection and characterization of atherosclerosis using contrast agents targeting the macrophage
    • Lipinski MJ, Frias JC, Fayad ZA. Advances in detection and characterization of atherosclerosis using contrast agents targeting the macrophage. J Nucl Cardiol 13: 699-709, 2006.
    • (2006) J Nucl Cardiol , vol.13 , pp. 699-709
    • Lipinski, M.J.1    Frias, J.C.2    Fayad, Z.A.3
  • 27
    • 33746255577 scopus 로고    scopus 로고
    • Development and validation of novel imaging technologies to assist translational studies in atherosclerosis
    • DOI 10.1016/j.ddtec.2006.06.008, PII S1740674906000321
    • Miserus RJJHM, Heeneman S, van Engelshoven JMA, Kooi ME, Daemen MJAP. Development and validation of novel imaging technologies to assist translational studies in atherosclerosis. Drug Disc Today: Technologies 3: 195-204, 2006. (Pubitemid 44089441)
    • (2006) Drug Discovery Today: Technologies , vol.3 , Issue.2 , pp. 195-204
    • Miserus, R.-J.J.H.M.1    Heeneman, S.2    Van Engelshoven, J.M.A.3    Kooi, M.E.4    Daemen, M.J.A.P.5
  • 28
    • 77952943415 scopus 로고    scopus 로고
    • Testing statistical hypotheses of equivalence
    • Stefan Wellek
    • Munk A. Testing statistical hypotheses of equivalence. Stefan Wellek. J Am Stat Assoc 99: 293-293, 2004.
    • (2004) J Am Stat Assoc , vol.99 , pp. 293-293
    • Munk, A.1
  • 30
    • 0037320451 scopus 로고    scopus 로고
    • TICAM-1, an adaptor molecule that participates in Toll-like receptor 3-mediated interferon-beta induction
    • DOI 10.1038/ni886
    • Oshiumi H, Matsumoto M, Funami K, Akazawa T, Seya T. TICAM-1, an adaptor molecule that participates in Toll-like receptor 3-mediated interferon-beta induction. Nat Immunol 4: 161-167, 2003. (Pubitemid 36193018)
    • (2003) Nature Immunology , vol.4 , Issue.2 , pp. 161-167
    • Oshiumi, H.1    Matsumoto, M.2    Funami, K.3    Akazawa, T.4    Seya, T.5
  • 31
    • 0032589575 scopus 로고    scopus 로고
    • H2 cell localization and delivery of B cell help in vivo
    • Randolph DA, Huang G, Carruthers CJ, Bromley LE, Chaplin DD. The role of CCR7 in TH1 and TH2 cell localization and delivery of B cell help in vivo. Science 286: 2159-2162, 1999. (Pubitemid 129516291)
    • (1999) Science , vol.286 , Issue.5447 , pp. 2159-2162
    • Randolph, D.A.1    Huang, G.2    Carruthers, C.J.L.3    Bromley, L.E.4    Chaplin, D.D.5
  • 32
    • 33947109060 scopus 로고    scopus 로고
    • Secretory granules of hypophyseal and pancreatic endocrine cells contain proteins of the neuronal postsynaptic density
    • DOI 10.1007/s00441-006-0309-y
    • Redecker P, Bockmann J, Bockers TM. Secretory granules of hypophyseal and pancreatic endocrine cells contain proteins of the neuronal postsynaptic density. Cell Tissue Res 328: 49-55, 2007. (Pubitemid 46411906)
    • (2007) Cell and Tissue Research , vol.328 , Issue.1 , pp. 49-55
    • Redecker, P.1    Bockmann, J.2    Bockers, T.M.3
  • 33
    • 0032693599 scopus 로고    scopus 로고
    • Atherosclerosis is an inflammatory disease
    • Ross R. Atherosclerosis is an inflammatory disease. Am Heart J 138: S419-S420, 1999.
    • (1999) Am Heart J , vol.138
    • Ross, R.1
  • 34
    • 0033554726 scopus 로고    scopus 로고
    • Two subsets of memory T lymphocytes with distinct homing potentials and effector functions
    • Sallusto F, Lenig D, Forster R, Lipp M, Lanzavecchia A. Two subsets of memory T lymphocytes with distinct homing potentials and effector functions. Nature 401: 708-712, 1999. (Pubitemid 129515761)
    • (1999) Nature , vol.401 , Issue.6754 , pp. 708-712
    • Sallusto, F.1    Lenig, D.2    Forster, R.3    Lipp, M.4    Lanzavecchia, A.5
  • 35
    • 0037103366 scopus 로고    scopus 로고
    • Prostaglandin E2 is a key factor for CCR7 surface expression and migration of monocyte-derived dendritic cells
    • DOI 10.1182/blood-2001-11-0017
    • Scandella E, Men Y, Gillessen S, Forster R, Groettrup M. Prostaglandin E2 is a key factor for CCR7 surface expression and migration of monocyte-derived dendritic cells. Blood 100: 1354-1361, 2002. (Pubitemid 34864292)
    • (2002) Blood , vol.100 , Issue.4 , pp. 1354-1361
    • Scandella, E.1    Men, Y.2    Gillessen, S.3    Forster, R.4    Groettrup, M.5
  • 36
    • 0033855577 scopus 로고    scopus 로고
    • Superparamagnetic iron oxide-enhanced MRI of atherosclerotic plaques in Watanabe hereditable hyperlipidemic rabbits
    • DOI 10.1097/00004424-200008000-00002
    • Schmitz SA, Coupland SE, Gust R, Winterhalter S, Wagner S, Kresse M, Semmler W, Wolf KJ. Superparamagnetic iron oxide-enhanced MRI of atherosclerotic plaques in Watanabe hereditable hyperlipidemic rabbits. Invest Radiol 35: 460-471, 2000. (Pubitemid 30622013)
    • (2000) Investigative Radiology , vol.35 , Issue.8 , pp. 460-471
    • Schmitz, S.A.1    Coupland, S.E.2    Gust, R.3    Winterhalter, S.4    Wagner, S.5    Kresse, M.6    Semmler, W.7    Wolf, K.-J.8
  • 40
    • 34147172715 scopus 로고    scopus 로고
    • Coordinate regulation of phospholipid biosynthesis and secretory pathway gene expression in XBP-1(S)-induced endoplasmic reticulum biogenesis
    • DOI 10.1074/jbc.M609490200
    • Sriburi R, Bommiasamy H, Buldak GL, Robbins GR, Frank M, Jackowski S, Brewer JW. Coordinate regulation of phospholipid biosynthesis and secretory pathway gene expression in XBP-1(S)-induced endoplasmic reticulum biogenesis. J Biol Chem 282: 7024-7034, 2007. (Pubitemid 47093662)
    • (2007) Journal of Biological Chemistry , vol.282 , Issue.10 , pp. 7024-7034
    • Sriburi, R.1    Bommiasamy, H.2    Buldak, G.L.3    Robbins, G.R.4    Frank, M.5    Jackowski, S.6    Brewer, J.W.7
  • 46
    • 33747345981 scopus 로고    scopus 로고
    • Classical and alternative activation of mononuclear phagocytes: Picking the best of both worlds for tumor promotion
    • DOI 10.1016/j.imbio.2006.06.002, PII S0171298506000829
    • Van Ginderachter JA, Movahedi K, Hassanzadeh Ghassabeh G, Meerschaut S, Beschin A, Raes G, De Baetselier P. Classical and alternative activation of mononuclear phagocytes: picking the best of both worlds for tumor promotion. Immunobiology 211: 487-501, 2006. (Pubitemid 44241651)
    • (2006) Immunobiology , vol.211 , Issue.6-8 , pp. 487-501
    • Van Ginderachter, J.A.1    Movahedi, K.2    Hassanzadeh Ghassabeh, G.3    Meerschaut, S.4    Beschin, A.5    Raes, G.6    De Baetselier, P.7
  • 49
    • 0034019601 scopus 로고    scopus 로고
    • Lessons from sudden coronary death: A comprehensive morphological classification scheme for atherosclerotic lesions
    • Virmani R, Kolodgie FD, Burke AP, Farb A, Schwartz SM. Lessons from sudden coronary death: a comprehensive morphological classification scheme for atherosclerotic lesions. Arterioscler Thromb Vasc Biol 20: 1262-1275, 2000.
    • (2000) Arterioscler Thromb Vasc Biol , vol.20 , pp. 1262-1275
    • Virmani, R.1    Kolodgie, F.D.2    Burke, A.P.3    Farb, A.4    Schwartz, S.M.5
  • 55
    • 34249302085 scopus 로고    scopus 로고
    • A key role for CCR7 in establishing central and peripheral tolerance
    • DOI 10.1016/j.it.2007.04.002, PII S1471490607000828
    • Worbs T, Forster R. A key role for CCR7 in establishing central and peripheral tolerance. Trends Immunol 28: 274-280, 2007. (Pubitemid 46810350)
    • (2007) Trends in Immunology , vol.28 , Issue.6 , pp. 274-280
    • Worbs, T.1    Forster, R.2
  • 57
    • 0035966269 scopus 로고    scopus 로고
    • XBP1 mRNA is induced by ATF6 and spliced by IRE1 in response to ER stress to produce a highly active transcription factor
    • DOI 10.1016/S0092-8674(01)00611-0
    • Yoshida H, Matsui T, Yamamoto A, Okada T, Mori K. XBP1 mRNA is induced by ATF6 and spliced by IRE1 in response to ER stress to produce a highly active transcription factor. Cell 107: 881-891, 2001. (Pubitemid 34084979)
    • (2001) Cell , vol.107 , Issue.7 , pp. 881-891
    • Yoshida, H.1    Matsui, T.2    Yamamoto, A.3    Okada, T.4    Mori, K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.