Fine-scale spatial genetic structure and allozymic diversity in natural populations of Ocotea catharinensis Mez. (Lauraceae)

Conservation Genetics

Volumn 11, Issue 3, 2010, Pages 965-976

  Tarazi, Roberto ^a   Mantovani, Adelar ^b   dos Reis, Maurício Sedrez ^a  

^a FEDERAL UNIVERSITY OF SANTA CATARINA   (Brazil)

^b SANTA CATARINA STATE UNIVERSITY   (Brazil)

Author keywords

Atlantic rain forest; Endangered species; Genetic diversity; Lauraceae; Spatial autocorrelation

Indexed keywords

ALLOZYME; AUTOCORRELATION; CONSERVATION GENETICS; CONSERVATION PLANNING; DIVERGENCE; ENDANGERED SPECIES; GENE FLOW; GENETIC DRIFT; GENETIC STRUCTURE; INBREEDING; POPULATION STRUCTURE; POPULATION VIABILITY ANALYSIS; RAINFOREST; SPATIAL ANALYSIS; SPECIES CONSERVATION;

ATLANTIC FOREST; BRAZIL;

LAURACEAE; MAGNOLIOPHYTA; OCOTEA; OCOTEA CATHARINENSIS;

EID: 77952879309     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-009-9939-4     Document Type: Article

References (100)

1. Alfenas AC, Brune W (1998) Identificações específicas de enzimas em géis. In: Alfenas AC (ed) Eletroforese de isoenzimas e proteínas afins: fundamentos e aplicações em plantas e microrganismos. Editora UFV, Viçosa, pp 201-328.
2. Álvarez-Buylla ER, García-Barrios R, Lara-Moreno C, Martínez-Ramos M (1996) Demographic and genetic models in conservation biology: applications and perspectives for tropical rain forest tree species. Annu Rev Ecol Syst 27: 387-421. doi: 10. 1146/annurev. ecolsys. 27. 1. 387.
3. Auler NMF, Reis MS, Guerra MP, Nodari RO (2002) The genetics and conservation of Araucaria angustifolia I. Genetic structure and diversity of natural populations by means of non-adaptative variation in the state of Santa Catarina, Brazil. Genet Mol Biol 25: 323-327. doi: 10. 1590/S1415-47572002000300014.
4. Barrett SC, Kohn JR (1991) Genetic and evolutionary consequences of small population size in plants: implications for conservation. In: Falk DA, Holsinger KE (eds) Genetics and conservation of rare plants. Oxford University Press, New York, pp 3-30.
5. Bawa KS (1992) Mating systems, genetic differentiation and speciation in tropical rain forest plants. Biotropica 24: 250-255. doi: 10. 2307/2388519.
6. Bittencourt JVM, Sebbenn AM (2007) Patterns of pollen and seed dispersal in a small, fragmented population of the wind-pollinated tree Araucaria angustifolia in southern Brazil. Heredity 99: 580-591. doi: 10. 1038/sj. hdy. 6801019.
7. Born C, Hardy OJ, Chevallier MH, Ossari S, Attéké C, Wickings J, Hossaert-McKey M (2008) Small-scale spatial genetic structure in the Central African rainforest tree species Aucoumea klaineana: a stepwise approach to infer impact of limited gene dispersal, population history and habitat fragmentation. Mol Ecol 17: 2041-2050. doi: 10. 1111/j. 1365-294X. 2007. 03685. x.
8. Bouchy P, Theodorou K, Couvet D (2005) Metapopulation viability: influence of migration. Conserv Genet 6: 75-85. doi: 10. 1007/s10592-004-7744-7.
9. Bower AD, Aitken SN (2008) Ecological genetics and seed transfer guidelines for Pinus albicaulis (Pinaceae). Am J Bot 95: 66-76. doi: 10. 3732/ajb. 95. 1. 66.
10. Carlini-Garcia LA, Vencovsky R, Coelho ASG (2001) Bootstrap method applied over resampling levels in the estimation of genetic parameters of populations. Scientia Agricola. doi: 10. 1590/S0103-90162001000400021.
11. Carvalho PER (1994) Espécies florestais brasileiras: recomendações silviculturais, potencialidades e uso da madeira. EMBRAPA-CNPF, Colombo.
12. Cascante A, Quesada M, Lobo JJ, Fuchs EA (2002) Effects of dry tropical forest fragmentation on the reproductive success and genetic structure of the tree Samanea saman. Conserv Biol 16: 137-147. doi: 10. 1046/j. 1523-1739. 2002. 00317. x.
13. CBD (Convention on Biological Diversity) (2003) Global strategy for plant conservation (UNEP/CBD/SBSTTA/9/14/2003) Montreal, Quebec. Available from http://www. cbd. int/doc/meetings/sbstta/sbstta-09/official/sbstta-09-14-en. pdf (accessed October 2008).
14. Cheptou PO, Schoen DJ (2007) Combining population genetics and demographical approaches in evolutionary studies of plant mating systems. Oikos 116: 271-279. doi: 10. 1111/j. 0030-1299. 2007. 14655. x.
15. Chung MY, Nason JD (2007) Spatial demographic and genetic consequences of harvesting within populations of the terrestrial orchid Cymbidium goeringii. Biol Conserv 37: 125-137. doi: 10. 1016/j. biocon. 2007. 01. 021.
16. Chung MG, Chung MY, Oh GS, Epperson BK (2000) Spatial genetic structure in a Neolitsea sericea population (Lauraceae). Heredity 85: 490-497. doi: 10. 1046/j. 1365-2540. 2000. 00781. x.
17. Chung MG, Chung MY, Epperson BK (2001) Conservation genetics of an endangered herb, Hanabusaya asiatica (Campanulaceae). Plant Biol 3: 42-49. doi: 10. 1055/s-2001-11744.
18. Chung MY, Nason JD, Epperson BK, Chung MG (2003) Temporal aspects of the fine-scale genetic structure in a population of Cinnamomum insularimontanum (Lauraceae). Heredity 90: 98-106. doi: 10. 1038/sj. hdy. 6800187.
19. Clark PJ, Evans FC (1954) Distance to nearest neighbor as a measure of spatial relationships in populations. Ecology 35: 445-453. doi: 10. 2307/1931034.
20. Cockerham CC, Weir BS (1993) Estimation of gene flow from F-Statistics. Evolution Int J Org Evolution 47: 855-863. doi: 10. 2307/2410189.
21. Condit R, Ashton PS, Baker P, Bunyavejchewin S, Gunatilleke S, Gunatilleke N, Hubbell SP, Foster RB, Itoh A, LaFrankie JV, Lee HS, Losos E, Manokaran N, Sukumar R, Yamakura T (2000) Spatial patterns in the distribution of tropical tree species. Science 288: 1414-1418. doi: 10. 1126/science. 288. 5470. 1414.
22. Conte R, Reis MS, Mantovani A, Vencovsky R (2008) Genetic structure and mating system of Euterpe edulis Mart. populations: a comparative analysis using microsatellite and allozyme markers. J Hered. doi: 10. 1093/jhered/esn055.
23. Couvet D (2002) Deleterious effects of restricted gene flow in fragmented populations. Conserv Biol 16: 369-376. doi: 10. 1046/j. 1523-1739. 2002. 99518. x.
24. Crow JF, Aoki K (1984) Group selection for a polygenic behavioral trait: estimating the degree of population subdivision. Proc Natl Acad Sci USA 81: 6073-6077. doi: 10. 1073/pnas. 81. 19. 6073.
25. Cruse-Sanders JM, Hamrick JL (2004) Spatial and genetic structure within populations of wild American ginseng (Panax quinquefolius L., Araliaceae). J Hered 95: 309-321. doi: 10. 1093/jhered/esh046.
26. Degen B, Petit R, Kremer A (2001) SGS-spatial genetic software: a computer program for analysis of spatial genetic and phenotypic structures of individuals and populations. J Hered 92: 447-448. doi: 10. 1093/jhered/92. 5. 447.
27. Dick CW (2008) New interpretations of fine-scale spatial genetic structure. Mol Ecol 17: 1873-1876. doi: 10. 1111/j. 1365-294X. 2008. 03728. x.
28. Dick CW, Hardy OJ, Jones FA, Petit R (2008) Spatial scales of pollen and seed-mediated gene flow in tropical rain forest trees. Trop Plant Biol 1: 20-33. doi: 10. 1007/s12042-007-9006-6.
29. Doligez A, Joly HI (1997) Genetic diversity and spatial structure within a natural stand of a tropical forest tree species, Carapa procera (Meliaceae), in French Guiana. Heredity 79: 72-82. doi: 10. 1038/hdy. 1997. 124.
30. Ennos RA, Clegg MT (1982) Effect of population substructuring on estimates of outcrossing rate in plant population. Heredity 48: 283-292. doi: 10. 1038/hdy. 1982. 33.
31. Epperson BK (1993) Recent advances in correlation studies of spatial patterns of genetic variations. Evol Biol 27: 95-155.
32. Epperson BK, Huang Z, Li TQ (1999) Measures of spatial structure in samples of genotypes for multiallelic loci. Genet Res 73: 251-261. doi: 10. 1017/S001667239900378X.
33. Frankham R (1995) Inbreeding and extinction: a threshold effect. Conserv Biol 9: 792-799. doi: 10. 1046/j. 1523-1739. 1995. 09040792. x.
34. Gaiotto FA, Grattapaglia D, Vencovsky R (2003) Genetic structure, mating system, and long-distance gene flow in heart of palm (Euterpe edulis Mart.). J Hered 94: 399-406. doi: 10. 1093/jhered/esg087.
35. Galetti M, Martuscelli P, Olmos F, Aleixo A (1997) Ecology and conservation of the jacutinga Pipile jacutinga in the Atlantic forest of Brazil. Biol Conserv 82: 31-39. doi: 10. 1016/S0006-3207(97)00004-9.
36. Gardner RH, Engelhardt KAM (2008) Spatial processes that maintain biodiversity in plant communities. Perspect Plant Ecol Evol Syst 9: 211-228. doi: 10. 1016/j. ppees. 2007. 08. 003.
37. Geburek T (2000) Effects of environmental pollution on the genetics of forest trees. In: Young AG, Boshier D, Boyle TJ (eds) Forest conservation genetics: principles and practice. CSIRO Publishing, Melbourne, pp 135-158.
38. Gibson JP, Wheelwright NT (1995) Genetic structure in a population of a tropical tree Ocotea tenera (Lauraceae): influence of avian seed dispersal. Oecologia 103: 49-54.
39. Hamrick JL (2004) Response of forest trees to global environmental changes. For Ecol Manage 197: 323-335. doi: 10. 1016/j. foreco. 2004. 05. 023.
40. Hamrick JL, Godt MJW (1996) Effects of life history traits on genetic diversity in plant species. Philos Trans R Soc Lond, B 351: 1291-1298. doi: 10. 1098/rstb. 1996. 0112.
41. Hamrick JL, Loveless MD (1986) Isozyme variation in tropical trees: procedures and preliminary results. Biotropica 18: 201-207. doi: 10. 2307/2388485.
42. Hamrick JL, Nason JD (2000) Gene flow in forest trees. In: Young AG, Boshier D, Boyle TJ (eds) Forest conservation genetics: principles and practice. CSIRO Publishing, Melbourne, pp 81-90.
43. Hamrick JL, Godt MJW, Sherman-Broyles (1992) Factors influencing levels of genetic diversity in woody plant species. New For 6: 95-124. doi: 10. 1007/BF00120641.
44. Hanski I, Ovaskainen O (2000) The metapopulation capacity of a fragmented landscape. Nature 404: 755-758. doi: 10. 1038/35008063.
45. Hanson TR, Brunsfeld SJ, Finegan B, Waits LP (2008) Pollen dispersal and genetic structure of the tropical tree Dipteryx panamensis in a fragmented Costa Rican landscape. Mol Ecol 17: 2060-2073. doi: 10. 1111/j. 1365-294X. 2008. 03726. x.
46. Hardy OJ, Maggia L, Bandou E, Breyne P, Caron H, Chevallier M, Doliguez A, Dutech C, Kremer A, Latouche-Halle C, Troispoux V, Veron V, Degen B (2006) Fine-scale genetic structure and gene dispersal inferences in 10 Neotropical tree species. Mol Ecol 15: 559-571. doi: 10. 1111/j. 1365-294X. 2005. 02785. x.
47. Harvey CA, Komar O, Chazdon R, Ferguson BG, Finegan B, Griffith DM, Martínez-Ramos M, Morales H, Nigh R, Soto-Pinto L, Breugel MV, Wishnie M (2008) Integrating agricultural landscapes with biodiversity conservation in the Mesoamerican hotspot. Conserv Biol 22: 8-15. doi: 10. 1111/j. 1523-1739. 2007. 00863. x.
48. He FL, Legendre P, LaFrankie JV (1997) Distribution patterns of tree species in a Malaysian tropical rain forest. J Veg Sci 8: 105-114. doi: 10. 2307/3237248.
49. Hedrick PW (1995) Gene flow and genetic restoration: the Florida panther as a case study. Conserv Biol 9: 996-1007. doi: 10. 1046/j. 1523-1739. 1995. 9050996. x.
50. Heywood JS (1991) Spatial analysis of genetic variation in plant populations. Annu Rev Ecol Syst 22: 335-355. doi: 10. 1146/annurev. es. 22. 110191. 002003.
51. Huang W, Luukkanen O, Johanson S, Kaaraka V, Räisänen S, Vihemäki H (2002) Agroforestry for biodiversity conservation of nature reserves: functional group identification and analysis. Agrofor Syst 55: 65-72. doi: 10. 1023/A: 1020284225155.
52. Hubbell SP (1979) Tree dispersion, abundance and diversity in a dry tropical forest. Science 203: 1299-1309. doi: 10. 1126/science. 203. 4387. 1299.
53. IESB (2007) Projeto de conservação e utilização sustentável da diversidade biológica brasileira-levantamento da cobertura vegetal nativa do Bioma Mata Atlântico: relatório final PROBIO 03/2004. Available from: http://www. mma. gov. br.
54. Itoh A, Yamakura T, Ogino K, Lee HS, Ashton PS (1997) Spatial distribution patterns of two predominant emergent trees in a tropical rainforest in Sarawak, Malaysia. Plant Ecol 132: 121-136. doi: 10. 1023/A: 1009779424279.
55. Jaquiéry J, Guillaume F, Perrin N (2008) Predicting the deleterious effects of mutation load in fragmented populations. Conserv Biol. doi: 10. 1111/j. 1523-1739. 2008. 01052. x.
56. Jones FA, Hubbell SP (2006) Demographic spatial genetic structure of the Neotropical tree, Jacaranda copaia. Mol Ecol 15: 3205-3217. doi: 10. 1111/j. 1365-294X. 2006. 03023. x.
57. Kageyama PY, Cunha GC, Barreto KD, Gandara FB, Camargo FRA, Sebbenn AM (2003) Diversidade e autocorrelação genética espacial em populações de Ocotea odorífera (Lauraceae). Scientia Forestalis 64: 108-109.
58. Kramer AT, Ison J, Ashley MV, Howe HF (2008) The paradox of forest fragmentation genetics. Conserv Biol. doi: 10. 1111/j. 1523-1739. 2008. 00944. x.
59. Lande R (1993) Risks of population extinction from demographic and environmental stochasticity and random catastrophes. Am Nat 142: 911-927. doi: 10. 1086/285580.
60. Lande R (1995) Mutation and conservation. Conserv Biol 9: 782-791. doi: 10. 1046/j. 1523-1739. 1995. 09040782. x.
61. Leimu R, Mutikainen P, Koricheva J, Fisher M (2006) How general are positive relationships between plant population size, fitness and genetic variation? J Ecol 94: 942-952. doi: 10. 1111/j. 1365-2745. 2006. 01150. x.
62. Lewis PO, Zaykin D (2001) Genetic data analysis: Computer program for the analysis of allelic data. Version 1. 0 (d16c). Available from: http://lewis. eeb. uconn. edu/lewishome/software. html.
63. Luna R, Epperson BK, Oyama K (2005) Spatial genetic structure of two sympatric Neotropical palms with contrasting life histories. Heredity 95: 298-305. doi: 10. 1038/sj. hdy. 6800655.
64. Mace GM, Lande R (1991) Assessing extinction threats-toward a reevaluation of IUCN threatened species categories. Conserv Biol 5: 148-157. doi: 10. 1111/j. 1523-1739. 1991. tb00119. x.
65. Manly BFJ (1997) Randomization, bootstrap and Monte Carlo methods in Biology, 2nd edn. Chapman and Hall, London.
66. Mantovani A, Morellato LPC, Reis MS (2006) Internal genetic structure and outcrossing rate in a natural population of Araucaria angustifolia (Bert.) O. Kuntze. J Hered 97: 466-472. doi: 10. 1093/jhered/esl031.
67. Matthies D, Bräuer I, Maibom W, Tscharntke (2004) Population size and the risk of local extinction: empirical evidence from rare plants. Oikos 105: 481-488. doi: 10. 1111/j. 0030-1299. 2004. 12800. x.
68. McKay JK, Christian CE, Harrison S, Rice KJ (2005) "How local is local?" A review of practical and conceptual issues in the genetics of restoration. Restor Ecol 13: 432-440. doi: 10. 1111/j. 1526-100X. 2005. 00058. x.
69. Mills LS, Allendorf FW (1996) The one-migrant-per-generation rule in conservation and management. Conserv Biol 10: 1509-1518. doi: 10. 1046/j. 1523-1739. 1996. 10061509. x.
70. Moraes PLR, Derbyshires MTVC (2002) Estrutura genética de populações naturais de Cryptocarya aschersoniana Mez. (Lauraceae) através de marcadores isoenzimáticos. Biota Neotropica 2: 1-19.
71. Moraes PLR, Paoli AA (1995) Dispersão e germinação de sementes de Crptocarya moschata Nees & Martius ex Nees, Ocotea catharinensis Mez. e Endlicheria paniculata (Sprengel) Macbride (Lauraceae). Arq Biol Tecnol 38: 1119-1129.
72. Moraes PLR, Paoli AA (1999) Morfologia e estabelecimento de plântulas de Cryptocarya moschata Nees, Ocotea catharinensis Mez. e Endlicheria paniculata (Spreng.)-Lauraceae. Rev Bras Bot 22: 287-295.
73. Moraes PLR, Monteiro R, Vencovsky R (2004) Intrapopulation genetic structure in Cryptocarya moschata Nees (Lauraceae). Rev Bras Bot 27: 475-487. doi: 10. 1590/S0100-84042004000300008.
74. Moran PAP (1950) Notes on continuous stochastic phenomena. Biometrika 37: 17-23.
75. Muller-Landau HC, Wright SJ, Calderón O, Condit R, Hubbell SP (2008) Interspecific variation in primary seed dispersal in a tropical forest. J Ecol 96: 653-667. doi: 10. 1111/j. 1365-2745. 2008. 01399. x.
76. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590.
77. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, NY.
78. Ng KKS, Lee SL, Saw LG, Plotkin JB, Koh CL (2006) Spatial structure and genetic diversity of three tropical tree species with different habitat preferences within a natural forest. Tree Genet Genomes 2: 121-131. doi: 10. 1007/s11295-006-0035-3.
79. Perfecto I, Vandermeer J (2008) Biodiversity conservation in tropical agroecosystems: a new conservation paradigm. Ann N Y Acad Sci 1134: 173-200. doi: 10. 1196/annals. 1439. 011.
80. Perfecto I, Armbrecht I, Philpott SM, Soto-Pinto L, Dietsch TV (2007) Shaded coffee and the stability of rainforest margins in northern Latin America. In: Tscharntke T, Leuschner C, Zeller M, Guhardja E, Bidin A (eds) Stability of tropical rainforest margins, linking ecological, economical and social constraints of land use and conservation. Springer, Heidelberg, pp 227-263.
81. Plotkin JB, Potts M, Leslie N, Manokaran N, LaFrankie J, Ashton PS (2000) Species-area curves, spatial aggregation, and habitat specialization in tropical forests. J Theor Biol 207: 81-99. doi: 10. 1006/jtbi. 2000. 2158.
82. Plotkin JB, Chave J, Ashton PS (2002) Cluster analysis of spatial patterns in Malaysian tree species. Am Nat 160: 629-643. doi: 10. 1086/342823.
83. Reed DH (2005) Relationship between population size and fitness. Conserv Biol 19: 563-568. doi: 10. 1111/j. 1523-1739. 2005. 00444. x.
84. Reed DH, Frankham R (2003) Correlation between fitness and genetic diversity. Conserv Biol 17: 230-237. doi: 10. 1046/j. 1523-1739. 2003. 01236. x.
85. Reis MS, Fantini AC, Nodari RO, Reis A, Guerra MP, Mantovani A (2000) Management and conservation of natural populations in Atlantic rain forest: the case study of palm heart (Euterpe edulis Martius). Biotropica 32: 894-902. doi: 10. 1111/j. 1744-7429. 2000. tb00627. x.
86. Reitz R, Klein RM, Reis A (1978) Projeto madeira de Santa Catarina. Sellowia 28-30: 1-320.
87. Sebbenn AM, Degen B, Azevedo VCR, Silva MB, Lacerda AEB, Ciampi AY, Kanashiro M, Carneiro FS, Thompson I, Loveless MD (2008) Modelling the long-term impacts of selective logging on genetic diversity and demographic structure of four tropical tree species in the Amazon forest. For Ecol Manage 254: 335-349. doi: 10. 1016/j. foreco. 2007. 08. 009.
88. Silva JZ, Puchalski A, Mantovani M, Reis MS (2003) Caracterização genética Preliminar de uma população Natural de Imbuia (Ocotea porosa), uma espécie ameaçada de extinção. In: Anais do 49° Congresso de Genética, Sociedade Brasileira de Genética, Ribeirão Preto.
89. Sokal RR, Oden NL (1978) Spatial autocorrelation in biology: I. Methodology. Biol J Linn Soc Lond 10: 199-228. doi: 10. 1111/j. 1095-8312. 1978. tb00013. x.
90. Sokal RR, Wartenberg DE (1983) A test of spatial autocorrelation analysis using an isolation-by-distance model. Genetics 105: 219-247.
91. Swofford DL, Selander RBA (1997) Biosys-2. A computer program for the analysis of allelic variation genetics. University of Illinois, Urbana.
92. Varty N, Guadagnin DL (1999) Ocotea catharinensis. In: IUCN 2008. 2008 IUCN red list of threatened species, Available in http://www. redlist. org.
93. Vekemans X, Hardy OJ (2004) New insights from fine-scale spatial genetic structure analyses in plant populations. Mol Ecol 13: 921-935. doi: 10. 1046/j. 1365-294X. 2004. 02076. x.
94. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution Int J Org Evolution 38: 1358-1370. doi: 10. 2307/2408641.
95. White GM, Boshier DH, Powell W (1999) Genetic variation within a fragmented population of Swietenia humilis Zucc. Mol Ecol 8: 1899-1909. doi: 10. 1046/j. 1365-294x. 1999. 00790. x.
96. Wright S (1943) Isolation by distance. Genetics 28: 114-138.
97. Wright S (1951) The genetical structure of populations. Ann Eugen 15: 395-420.
98. Wright S (1965) The interpretation of population structure by F-statistics with special regard to systems of mating. Evolution Int J Org Evolution 19: 395-420. doi: 10. 2307/2406450.
99. Young AG, Boyle TJ (2000) Forest fragmentation. In: Young AG, Boshier D, Boyle TJ (eds) Forest conservation genetics: principles and practice. CSIRO Publishing, Melbourne, pp 123-134.
100. Young A, Boyle T, Brown T (1996) The population genetic consequences of habitat fragmentation for plants. Trends Ecol Evol 11: 413-418. doi: 10. 1016/0169-5347(96)10045-8.