메뉴 건너뛰기




Volumn 283, Issue 6, 2010, Pages 551-563

Molecular markers based on LTR retrotransposons BARE-1 and Jeli uncover different strata of evolutionary relationships in diploid wheats

Author keywords

Evolutionary genomics; Molecular markers; Phylogeny; Retrotransposon; Wheat

Indexed keywords

MOLECULAR MARKER; PROTEIN BARE 1; PROTEIN JELI; UNCLASSIFIED DRUG;

EID: 77952770789     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-010-0539-2     Document Type: Article
Times cited : (34)

References (56)
  • 1
    • 72549116162 scopus 로고    scopus 로고
    • Scientific names in the Triticeae
    • Feuillet C, Muehlbauer GJ (eds).Springer, New York
    • Barkworth ME, von Bothmer R (2009) Scientific names in the Triticeae. In: Feuillet C, Muehlbauer GJ (eds) Genetics and genomics of the Triticeae. Springer, New York, pp 3-30
    • (2009) Genetics and Genomics of the Triticeae , pp. 3-30
    • Barkworth, M.E.1    Von Bothmer, R.2
  • 2
    • 39149140732 scopus 로고    scopus 로고
    • Silver staining DNA in polyacrylamide gels
    • Bassam BJ, Gresshoff PM (2007) Silver staining DNA in polyacrylamide gels. Nat Protoc 2:2649-2654
    • (2007) Nat Protoc , vol.2 , pp. 2649-2654
    • Bassam, B.J.1    Gresshoff, P.M.2
  • 3
    • 0033976643 scopus 로고    scopus 로고
    • Transposable element contributions to plant gene and genome evolution
    • Bennetzen JL (2000) Transposable element contributions to plant gene and genome evolution. Plant Mol Biol 42:251-269
    • (2000) Plant Mol Biol , vol.42 , pp. 251-269
    • Bennetzen, J.L.1
  • 6
    • 0025641827 scopus 로고
    • Transfer RNA genes are genomic targets for de novo transposition of the yeast retrotransposon Ty3
    • Chalker DL, Sandmeyer SB (1990) Transfer RNA genes are genomic targets for de novo transposition of the yeast retrotransposon Ty3. Genetics 126:837-850
    • (1990) Genetics , vol.126 , pp. 837-850
    • Chalker, D.L.1    Sandmeyer, S.B.2
  • 8
    • 0000250265 scopus 로고
    • Measures of the amount of ecologic association between species
    • Dice LR (1945) Measures of the amount of ecologic association between species. Ecology 26:297-302
    • (1945) Ecology , vol.26 , pp. 297-302
    • Dice, L.R.1
  • 10
    • 0031782964 scopus 로고    scopus 로고
    • Polymorphism of insertion sites of Ty1-copia class retrotransposons and its use for linkage and diversity analysis in pea
    • Ellis TH, Poyser SJ, Knox MR, Vershinin AV, Ambrose MJ (1998) Polymorphism of insertion sites of Ty1-copia class retrotransposons and its use for linkage and diversity analysis in pea. Mol Gen Genet 260:9-19
    • (1998) Mol Gen Genet , vol.260 , pp. 9-19
    • Ellis, T.H.1    Poyser, S.J.2    Knox, M.R.3    Vershinin, A.V.4    Ambrose, M.J.5
  • 11
    • 0036250001 scopus 로고    scopus 로고
    • Plant transposable elements: Where genetics meets genomics
    • Feschotte C, Jiang N, Wessler SR (2002) Plant transposable elements: where genetics meets genomics. Nat Rev Genet 3:329-341
    • (2002) Nat Rev Genet , vol.3 , pp. 329-341
    • Feschotte, C.1    Jiang, N.2    Wessler, S.R.3
  • 13
    • 0029048799 scopus 로고
    • Restriction fragment length polymorphism-coupled domain-directed differential display: A highly efficient technique for expression analysis of multigene families
    • Fischer A, Saedler H, Theissen G (1995) Restriction fragment length polymorphism-coupled domain-directed differential display: a highly efficient technique for expression analysis of multigene families. Proc Natl Acad Sci USA 92:5331-5335
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 5331-5335
    • Fischer, A.1    Saedler, H.2    Theissen, G.3
  • 14
    • 0032409406 scopus 로고    scopus 로고
    • Retrotransposonbased insertion polymorphisms (RBIP) for high throughput marker analysis
    • Flavell AJ, Knox MR, Pearce SR, Ellis TH (1998) Retrotransposonbased insertion polymorphisms (RBIP) for high throughput marker analysis. Plant J 16:643-650
    • (1998) Plant J , vol.16 , pp. 643-650
    • Flavell, A.J.1    Knox, M.R.2    Pearce, S.R.3    Ellis, T.H.4
  • 16
    • 72549101712 scopus 로고    scopus 로고
    • Phylogeny of the A genomes of wild and cultivated wheat species
    • Golovnina K, Kondratenko E, Blinov A, Goncharov N (2009) Phylogeny of the A genomes of wild and cultivated wheat species. Russ J Genet 45:1360-1367
    • (2009) Russ J Genet , vol.45 , pp. 1360-1367
    • Golovnina, K.1    Kondratenko, E.2    Blinov, A.3    Goncharov, N.4
  • 17
    • 36349023726 scopus 로고    scopus 로고
    • Comparative genetic analysis of diploid naked wheat Triticum sinskajae and the progenitor T. monococcum accession
    • Goncharov NP, Kondratenko E, Bannikova SV, Konovalov AA, Golovnina KA (2007) Comparative genetic analysis of diploid naked wheat Triticum sinskajae and the progenitor T. monococcum accession. Russ J Genet 43:1248-1256
    • (2007) Russ J Genet , vol.43 , pp. 1248-1256
    • Goncharov, N.P.1    Kondratenko, E.2    Bannikova, S.V.3    Konovalov, A.A.4    Golovnina, K.A.5
  • 18
    • 72549092492 scopus 로고    scopus 로고
    • Taxonomy and molecular phylogeny of natural and artificial wheat species
    • Goncharov NP, Golovnina KA, Kondratenko EY (2009) Taxonomy and molecular phylogeny of natural and artificial wheat species. Breed Sci 59:492-498
    • (2009) Breed Sci , vol.59 , pp. 492-498
    • Goncharov, N.P.1    Golovnina, K.A.2    Kondratenko, E.Y.3
  • 20
    • 34748886657 scopus 로고    scopus 로고
    • PAST: Paleontological statistics software package for education and data analysis
    • Hammer O, Harper DAT, Ryan PD (2001) PAST: paleontological statistics software package for education and data analysis. Palaeontol Electronica 4:1-9
    • (2001) Palaeontol Electronica , vol.4 , pp. 1-9
    • Hammer, O.1    Dat, H.2    Ryan, P.D.3
  • 23
    • 45849133031 scopus 로고    scopus 로고
    • Reassessing domestication events in the Near East: Einkorn and Triticum urartu
    • Heun M, Haldorsen S, Vollan K (2008) Reassessing domestication events in the Near East: einkorn and Triticum urartu. Genome 51:444-451
    • (2008) Genome , vol.51 , pp. 444-451
    • Heun, M.1    Haldorsen, S.2    Vollan, K.3
  • 24
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23:254-267
    • (2006) Mol Biol Evol , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 25
    • 0027192351 scopus 로고
    • Hotspots for unselected Ty1 transposition events on yeast chromosome III are near tRNA genes and LTR sequences
    • Ji H, Moore DP, Blomberg MA, Braiterman LT, Voytas DF, Natsoulis G, Boeke JD (1993) Hotspots for unselected Ty1 transposition events on yeast chromosome III are near tRNA genes and LTR sequences. Cell 73:1007-1018
    • (1993) Cell , vol.73 , pp. 1007-1018
    • Ji, H.1    Moore, D.P.2    Blomberg, M.A.3    Braiterman, L.T.4    Voytas, D.F.5    Natsoulis, G.6    Boeke, J.D.7
  • 27
    • 37549005616 scopus 로고    scopus 로고
    • Molecular diversity at 18 loci in 321 wild and 92 domesticate lines reveal no reduction of nucleotide diversity during Triticum monococcum (einkorn) domestication: Implications for the origin of agriculture
    • Kilian B, Ozkan H, Walther A, Kohl J, Dagan T, Salamini F, Martin W (2007) Molecular diversity at 18 loci in 321 wild and 92 domesticate lines reveal no reduction of nucleotide diversity during Triticum monococcum (einkorn) domestication: implications for the origin of agriculture. Mol Biol Evol 24:2657-2668
    • (2007) Mol Biol Evol , vol.24 , pp. 2657-2668
    • Kilian, B.1    Ozkan, H.2    Walther, A.3    Kohl, J.4    Dagan, T.5    Salamini, F.6    Martin, W.7
  • 29
    • 0035206133 scopus 로고    scopus 로고
    • Applications of retrotransposons as genetic tools in plant biology
    • Kumar A, Hirochika H (2001) Applications of retrotransposons as genetic tools in plant biology. Trends Plant Sci 6:127-134
    • (2001) Trends Plant Sci , vol.6 , pp. 127-134
    • Kumar, A.1    Hirochika, H.2
  • 30
    • 0025516495 scopus 로고
    • A copialike element in Pisum demonstrates the uses of dispersed repeated sequences in genetic analysis
    • Lee D, Ellis THN, Turner L, Hellens RP, Cleary WG (1990) A copialike element in Pisum demonstrates the uses of dispersed repeated sequences in genetic analysis. Plant Mol Biol 15:707-722
    • (1990) Plant Mol Biol , vol.15 , pp. 707-722
    • Lee, D.1    Thn, E.2    Turner, L.3    Hellens, R.P.4    Cleary, W.G.5
  • 31
    • 66449124318 scopus 로고    scopus 로고
    • Epigenetic regulation of transposable elements in plants
    • Lisch D (2009) Epigenetic regulation of transposable elements in plants. Ann Rev Plant Biol 60:43-66
    • (2009) Ann Rev Plant Biol , vol.60 , pp. 43-66
    • Lisch, D.1
  • 32
    • 71149118599 scopus 로고    scopus 로고
    • Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees
    • Llorens C, Munoz-Pomer A, Bernad L, Botella H, Moya A (2009) Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees. Biol Direct 4:41
    • (2009) Biol Direct , vol.4 , pp. 41
    • Llorens, C.1    Munoz-Pomer, A.2    Bernad, L.3    Botella, H.4    Moya, A.5
  • 33
    • 36349028715 scopus 로고    scopus 로고
    • Ty1-copia retrotransposon-based SSAP marker development and its potential in the genetic study of cucurbits
    • Lou Q, Chen J (2007) Ty1-copia retrotransposon-based SSAP marker development and its potential in the genetic study of cucurbits. Genome 50:802-810
    • (2007) Genome , vol.50 , pp. 802-810
    • Lou, Q.1    Chen, J.2
  • 34
    • 29144433288 scopus 로고
    • Genus Triticum and its systematics
    • Shumny VK (ed), Nauka, Moscow
    • Mac Key J (1989) Genus Triticum and its systematics. In: Shumny VK (ed) Vavilov's legacy in modern biology. Nauka, Moscow, pp 170-185
    • (1989) Vavilov's Legacy in Modern Biology , pp. 170-185
    • Mac Key, J.1
  • 35
    • 48349140540 scopus 로고    scopus 로고
    • Polymorphisms at the Gli-Au1 and Gli-Au2 loci in wild diploid wheat (Triticum urartu)
    • Martín M, Martín L, Alvarez J (2008) Polymorphisms at the Gli-Au1 and Gli-Au2 loci in wild diploid wheat (Triticum urartu). Euphytica 163:303-307
    • (2008) Euphytica , vol.163 , pp. 303-307
    • Martín, M.1    Martín, L.2    Alvarez, J.3
  • 37
    • 0033799423 scopus 로고    scopus 로고
    • Pea Ty1-copia group retrotransposons: Transpositional activity and use as markers to study genetic diversity in Pisum
    • Pearce SR, Knox M, Ellis THN, Flavell AJ, Kumar A (2000) Pea Ty1-copia group retrotransposons: transpositional activity and use as markers to study genetic diversity in Pisum. Mol Gen Genet 263:898-907
    • (2000) Mol Gen Genet , vol.263 , pp. 898-907
    • Pearce, S.R.1    Knox, M.2    Thn, E.3    Flavell, A.J.4    Kumar, A.5
  • 38
    • 1542344830 scopus 로고    scopus 로고
    • Retrotransposon-based molecular markers for linkage and genetic diversity analysis in wheat
    • Queen RA, Gribbon BM, James C, Jack P, Flavell AJ (2004) Retrotransposon-based molecular markers for linkage and genetic diversity analysis in wheat. Mol Genet Genomics 271:91-97
    • (2004) Mol Genet Genomics , vol.271 , pp. 91-97
    • Queen, R.A.1    Gribbon, B.M.2    James, C.3    Jack, P.4    Flavell, A.J.5
  • 39
    • 33749640324 scopus 로고    scopus 로고
    • Morgane, a new LTR retrotransposon group, and its subfamilies in wheats
    • Sabot F, Sourdille P, Chantret N, Bernard M (2006) Morgane, a new LTR retrotransposon group, and its subfamilies in wheats. Genetica 128:439-447
    • (2006) Genetica , vol.128 , pp. 439-447
    • Sabot, F.1    Sourdille, P.2    Chantret, N.3    Bernard, M.4
  • 40
    • 34548732574 scopus 로고    scopus 로고
    • Genetic diversity analysis in Vicia species using retrotransposonbased SSAP markers
    • Sanz A, Gonzalez S, Syed N, Suso M, Saldaña C, Flavell A (2007) Genetic diversity analysis in Vicia species using retrotransposonbased SSAP markers. Mol Genet Genomics 278:433-441
    • (2007) Mol Genet Genomics , vol.278 , pp. 433-441
    • Sanz, A.1    Gonzalez, S.2    Syed, N.3    Suso, M.4    Saldaña, C.5    Flavell, A.6
  • 41
    • 0036387914 scopus 로고    scopus 로고
    • Genetic diversity of wheat wild relatives in the Near East detected by AFLP
    • Sasanuma T, Chabane K, Endo T, Valkoun J (2002) Genetic diversity of wheat wild relatives in the Near East detected by AFLP. Euphytica 127:81-93
    • (2002) Euphytica , vol.127 , pp. 81-93
    • Sasanuma, T.1    Chabane, K.2    Endo, T.3    Valkoun, J.4
  • 42
    • 35748983553 scopus 로고    scopus 로고
    • Molecular markers to assess genetic diversity
    • Schulman A (2007) Molecular markers to assess genetic diversity. Euphytica 158:313-321
    • (2007) Euphytica , vol.158 , pp. 313-321
    • Schulman, A.1
  • 46
    • 17444395610 scopus 로고    scopus 로고
    • Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR
    • Tam SM, Mhiri C, Vogelaar A, Kerkveld M, Pearce SR, Grandbastien M-A (2005) Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR. Theor Appl Genet 110:819-831
    • (2005) Theor Appl Genet , vol.110 , pp. 819-831
    • Tam, S.M.1    Mhiri, C.2    Vogelaar, A.3    Kerkveld, M.4    Pearce, S.R.5    Grandbastien, M.-A.6
  • 47
    • 0000490288 scopus 로고
    • Linkage among isozyme, RFLP and RAPD markers in Vicia faba
    • Torres AM, Weeden NF, Martín A (1993) Linkage among isozyme, RFLP and RAPD markers in Vicia faba. Theor Appl Genet 85:937-945
    • (1993) Theor Appl Genet , vol.85 , pp. 937-945
    • Torres, A.M.1    Weeden, N.F.2    Martín, A.3
  • 49
    • 0347986765 scopus 로고    scopus 로고
    • Transposable elements reveal the impact of introgression, rather than transposition, in Pisum diversity, evolution, and domestication
    • Vershinin AV, Allnutt TR, Knox MR, Ambrose MJ, Ellis TH (2003) Transposable elements reveal the impact of introgression, rather than transposition, in Pisum diversity, evolution, and domestication. Mol Biol Evol 20:2067-2075
    • (2003) Mol Biol Evol , vol.20 , pp. 2067-2075
    • Vershinin, A.V.1    Allnutt, T.R.2    Knox, M.R.3    Ambrose, M.J.4    Ellis, T.H.5
  • 50
    • 70349655727 scopus 로고    scopus 로고
    • Genetic variability in sunflower (Helianthus annuus L.) and in the Helianthus genus as assessed by retrotransposon-based molecular markers
    • Vukich M, Schulman AH, Giordani T, Natali L, Kalendar R, Cavallini A (2009) Genetic variability in sunflower (Helianthus annuus L.) and in the Helianthus genus as assessed by retrotransposon-based molecular markers. Theor Appl Genet 119:1027-1038
    • (2009) Theor Appl Genet , vol.119 , pp. 1027-1038
    • Vukich, M.1    Schulman, A.H.2    Giordani, T.3    Natali, L.4    Kalendar, R.5    Cavallini, A.6
  • 51
    • 0030991387 scopus 로고    scopus 로고
    • Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequencespecific amplification polymorphisms (S-SAP)
    • Waugh R, McLean K, Flavell AJ, Pearce SR, Kumar A, Thomas BB, Powell W (1997) Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequencespecific amplification polymorphisms (S-SAP). Mol Gen Genet 253:687-694
    • (1997) Mol Gen Genet , vol.253 , pp. 687-694
    • Waugh, R.1    McLean, K.2    Flavell, A.J.3    Pearce, S.R.4    Kumar, A.5    Thomas, B.B.6    Powell, W.7
  • 52
    • 0037700013 scopus 로고    scopus 로고
    • TREP: A database for Triticeae repetitive elements
    • Wicker T, Matthews DE, Keller B (2002) TREP: a database for Triticeae repetitive elements. Trends Plant Sci 7:561-562
    • (2002) Trends Plant Sci , vol.7 , pp. 561-562
    • Wicker, T.1    Matthews, D.E.2    Keller, B.3
  • 54
    • 69249142634 scopus 로고    scopus 로고
    • A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley
    • Wicker T, Taudien S, Houben A, Keller B, Graner A, Platzer M, Stein N (2009) A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley. Plant J 59:712-722
    • (2009) Plant J , vol.59 , pp. 712-722
    • Wicker, T.1    Taudien, S.2    Houben, A.3    Keller, B.4    Graner, A.5    Platzer, M.6    Stein, N.7
  • 55
    • 27544459852 scopus 로고    scopus 로고
    • Intra- and interspecific phylogenetic relationships among diploid Triticum-Aegilops species (Poaceae) based on base-pair substitutions, indels, and microsatellites in chloroplast noncoding sequences
    • Yamane K, Kawahara T (2005) Intra- and interspecific phylogenetic relationships among diploid Triticum-Aegilops species (Poaceae) based on base-pair substitutions, indels, and microsatellites in chloroplast noncoding sequences. Am J Bot 92:1887-1898
    • (2005) Am J Bot , vol.92 , pp. 1887-1898
    • Yamane, K.1    Kawahara, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.