Ty1-copia retrotransposon-based SSAP marker development in cashew (Anacardium occidentale L.)

Theoretical and Applied Genetics

Volumn 110, Issue 7, 2005, Pages 1195-1202

  Syed, N H ^a,c   Sureshsundar, S ^a   Wilkinson, M J ^b   Bhau, B S ^d   Cavalcanti, J J V ^b   Flavell, A J ^a  

^a UNIVERSITY OF DUNDEE   (United Kingdom)

^b UNIVERSITY OF READING   (United Kingdom)

^c SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

^d REGIONAL RESEARCH LABORATORY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

AMPLIFICATION; GENES; HARDWOODS;

INSERTIONAL POLYMORPHISM; LONG TERMINAL REPEAT (LTR); MOLECULAR MARKER SYSTEMS; POLYMORPHIC MARKERS;

BIOMARKERS;

PRIMER DNA;

AMINO ACID SEQUENCE; ARTICLE; CASHEW NUT; COMPARATIVE STUDY; DNA SEQUENCE; GENE STRUCTURE; GENETIC MARKER; GENETIC POLYMORPHISM; GENETICS; LONG TERMINAL REPEAT; MOLECULAR GENETICS; NUCLEIC ACID AMPLIFICATION; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RETROPOSON;

AMINO ACID SEQUENCE; ANACARDIUM; BASE SEQUENCE; DNA PRIMERS; GENE COMPONENTS; GENETIC MARKERS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID AMPLIFICATION TECHNIQUES; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RETROELEMENTS; SEQUENCE ANALYSIS, DNA; TERMINAL REPEAT SEQUENCES;

ANACARDIUM; GENES; MARKERS;

ANACARDIUM OCCIDENTALE;

EID: 18844379442     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-005-1948-1     Document Type: Article

References (28)

1. Archak S, Gaikwad AB, Gautam D, Rao EV, Swamy KR, Karihaloo JL (2003) Comparative assessment of DNA fingerprinting techniques (RAPD, ISSR and AFLP) for genetic analysis of cashew (Anacardium occidentale L.) accessions of India. Genome 46:362-369
2. Cardoso JE, Cavalcanti JJV, Cavalcante MJBD, Aragao MLD and Felipe EM (1999) Genetic resistance of dwarf cashew (Anacardium occidentale L.) to anthracnose, black mold, and angular leaf spot. Crop Protect 18:23-27
3. Casa AM, Brouwer C, Nagel A, Wang L, Zhang Q, Kresovich S, Wessler SR (2000) Inaugural article: the MITE family heartbreaker (Hbr): molecular markers in maize. Proc Natl Acad USA Sci 97:10083-10089
4. Cavalcanti JJV, Pinto CABP, Crisostomo JR. and Ferreira DF (2000) Diallel analysis to evaluate interpopulational cashew tree hybrids (Portuguese). Pesqui Agropecu Bras 35:1567-1575
5. Cavalcanti JJV, Crisostomo JR, Barros LM, Paiva JR (2003) Heterosis in precocious dwarf cashew (Portuguese). Cienc Agrotecnol 27:565-570
6. Ellis TH, Poyser SJ, Knox MR, Vershinin AV, Ambrose MJ (1998) Ty1-copia class retrotransposon insertion site polymorphism for linkage and diversity analysis in pea. Mol Gen Genet 260:9-19
7. FAOSTAT Agriculture Data (2002) available at http://apps.-fao.org
8. Flavell AJ, Dunbar E, Anderson R, Pearce SR, Hartley R, Kumar A (1992) Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants. Nucleic Acids Res 20:3639-3644
9. Flavell AJ, Knox MR, Pearce SR, Ellis TH (1998) Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis. Plant J 16:643-650
10. Gribbon BM, Pearce SR, Kalendar R, Schulman AH, Paulin L, Jack P, Kumar A, Flavell AJ (1999) Phylogeny and transpositional activity of Ty1-copia group retrotransposons in cereal genomes. Mol Gen Genet 261:883-891
11. Kalendar R, Grob T, Regina M, Suonemi A, Schulman A (1999) IRAP and REMAP: two new retrotransposon-based DNA fingerprinting techniques. Theor Appl Genet 98:704-771
12. Konieczny A, Voytas DF, Cummings MP, Ausubel FM (1991) A superfamily of Arabidopsis thaliana retrotransposons. Genetics 127:801-809
13. Kumar A, Pearce SR, McLean K, Harrison G, Heslop-Harrison JS, Waugh R, Flavell AJ (1997) The Ty1-copia group of retrotransposons in plants: genomic organisation, evolution, and use as molecular markers. Genetica 100:205-217
14. Nagy ED, Lelley T (2003) Genetic and physical mapping of sequence-specific amplified polymorphic (SSAP) markers on the 1RS chromosome arm of rye in a wheat background. Theor Appl Genet 107:1271-1277
15. Nambiar MC, Pillai PKT (1985) Cashew. In: Bose TK (ed) Fruits of India: tropical and subtropical. Naya Prokash, Calcutta, pp 409-438
16. Pearce SR, Harrison G, Li D, Heslop-Harrison J, Kumar A, Flavell AJ (1996a) The Ty1-copia group retrotransposons in Vicia species: copy number, sequence heterogeneity and chromosomal localisation. Mol Gen Genet 250:305-315
17. Pearce SR, Pich U, Harrison G, Flavell AJ, Heslop-Harrison JS, Schubert I, Kumar A (1996b) The Ty1-copia group retrotransposons of Allium cepa are distributed throughout the chromosomes but are enriched in the terminal heterochromatin. Chromosome Res 4:357-364
18. Pearce SR, Harrison G, Heslop-Harrison PJ, Flavell AJ, Kumar A (1997) Characterization and genomic organisation of Ty1-copia group retrotransposons in rye (Secale cereale). Genome 40:617-625
19. Pearce SR, Stuart-Rogers C, Knox MR, Kumar A, Ellis TH, Flavell AJ (1999) Rapid isolation of plant Ty1-copia group retrotransposon LTR sequences for molecular marker studies. Plant J 19:711-717
20. Porceddu A, Albertini E, Barcaccia G, Marconi G, Bertoli FB, Veronesi F (2002) Development of S-SAP markers based on an LTR-like sequence from Medicago sativa L. Mol Genet Genomics 267:107-114
21. Purseglove JW (1968) Tropical crops: Dicotyledons. Longman, Harlow
22. Queen RA, Gribbon BM, James C, Jack P, Flavell AJ (2004) Retrotransposon-based molecular markers for linkage and genetic diversity analysis in wheat. Mol Genet Genomics 271:91-97
23. Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW (1984) Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Acad Sci USA 81:8014-8018
24. Schulman AH, Flavell AJ, Ellis THN (2004) The application of LTR retrotransposons as genetic markers in plants. In: Miller W, Capy P (eds) Mobile genetic elements: protocols and genomic applications. Humana Press, Totowa, pp 145-173
25. Suoniemi A, Tanskanen J, Schulman AH (1998) Gypsy-like retrotransposons are widespread in the plant kingdom. Plant J 13:699-705
26. Virk PS, Pooni HS, Syed NH, Kearsey MJ (1999) Fast and reliable genotype validation using microsatellite markers in Arabidopsis thaliana. Theor Appl Genet 98:462-464
27. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M and Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
28. Waugh R, McLean K, Flavell AJ, Pearce SR, Kumar A, Thomas BB, Powell W (1997) Genetic distribution of BARE-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP). Mol Gen Genet 253:687-694