메뉴 건너뛰기




Volumn 6, Issue 4, 2010, Pages

Network modeling identifies molecular functions targeted by miR-204 to suppress head and neck tumor metastasis

Author keywords

[No Author keywords available]

Indexed keywords

CELL CULTURE; DISEASES; NETWORK TOPOLOGY; PATHOLOGY; RISK ASSESSMENT; RNA; TUMORS;

EID: 77952742610     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1000730     Document Type: Article
Times cited : (130)

References (85)
  • 1
    • 0037418839 scopus 로고    scopus 로고
    • Bantam Encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila
    • Brennecke J, Hipfner DR, Stark A, Russell RB, Cohen SM (2003) bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila. Cell 113: 25-36.
    • (2003) Cell , vol.113 , pp. 25-36
    • Brennecke, J.1    Hipfner, D.R.2    Stark, A.3    Russell, R.B.4    Cohen, S.M.5
  • 2
    • 0346727524 scopus 로고    scopus 로고
    • MicroRNAs modulate hematopoietic lineage differentiation
    • Chen CZ, Li L, Lodish HF, Bartel DP (2004) MicroRNAs modulate hematopoietic lineage differentiation. Science 303: 83-86.
    • (2004) Science , vol.303 , pp. 83-86
    • Chen, C.Z.1    Li, L.2    Lodish, H.F.3    Bartel, D.P.4
  • 4
    • 33644619021 scopus 로고    scopus 로고
    • Morphogenesis in skin is governed by discrete sets of differentially expressed microRNAs
    • Yi R, O'Carroll D, Pasolli HA, Zhang Z, Dietrich FS, et al. (2006) Morphogenesis in skin is governed by discrete sets of differentially expressed microRNAs. Nat Genet 38: 356-362.
    • (2006) Nat Genet , vol.38 , pp. 356-362
    • Yi, R.1    O'Carroll, D.2    Pasolli, H.A.3    Zhang, Z.4    Dietrich, F.S.5
  • 5
    • 9144270691 scopus 로고    scopus 로고
    • A pancreatic islet-specific microRNA regulates insulin secretion
    • Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, et al. (2004) A pancreatic islet-specific microRNA regulates insulin secretion. Nature 432: 226-230.
    • (2004) Nature , vol.432 , pp. 226-230
    • Poy, M.N.1    Eliasson, L.2    Krutzfeldt, J.3    Kuwajima, S.4    Ma, X.5
  • 6
    • 38849107424 scopus 로고    scopus 로고
    • The microRNAs miR-373 and miR-520c promote tumour invasion and metastasis
    • Huang Q, Gumireddy K, Schrier M, le Sage C, Nagel R, et al. (2008) The microRNAs miR-373 and miR-520c promote tumour invasion and metastasis. Nat Cell Biol 10: 202-210.
    • (2008) Nat Cell Biol , vol.10 , pp. 202-210
    • Huang, Q.1    Gumireddy, K.2    Schrier, M.3    le Sage, C.4    Nagel, R.5
  • 7
    • 35148886434 scopus 로고    scopus 로고
    • Tumour invasion and metastasis initiated by microRNA-10b in breast cancer
    • Ma L, Teruya-Feldstein J, Weinberg RA (2007) Tumour invasion and metastasis initiated by microRNA-10b in breast cancer. Nature 449: 682-688.
    • (2007) Nature , vol.449 , pp. 682-688
    • Ma, L.1    Teruya-Feldstein, J.2    Weinberg, R.A.3
  • 8
    • 38049115129 scopus 로고    scopus 로고
    • Endogenous human microRNAs that suppress breast cancer metastasis
    • Tavazoie SF, Alarcon C, Oskarsson T, Padua D, Wang Q, et al. (2008) Endogenous human microRNAs that suppress breast cancer metastasis. Nature 451: 147-152.
    • (2008) Nature , vol.451 , pp. 147-152
    • Tavazoie, S.F.1    Alarcon, C.2    Oskarsson, T.3    Padua, D.4    Wang, Q.5
  • 9
    • 33750318273 scopus 로고    scopus 로고
    • A guide through present computational approaches for the identification of mammalian microRNA targets
    • Sethupathy P, Megraw M, Hatzigeorgiou AG (2006) A guide through present computational approaches for the identification of mammalian microRNA targets. Nat Methods 3: 881-886.
    • (2006) Nat Methods , vol.3 , pp. 881-886
    • Sethupathy, P.1    Megraw, M.2    Hatzigeorgiou, A.G.3
  • 11
    • 0028155340 scopus 로고
    • An allelotype of squamous carcinoma of the head and neck using microsatellite markers
    • Ah-See KW, Cooke TG, Pickford IR, Soutar D, Balmain A (1994) An allelotype of squamous carcinoma of the head and neck using microsatellite markers. Cancer Res 54: 1617-1621.
    • (1994) Cancer Res , vol.54 , pp. 1617-1621
    • Ah-See, K.W.1    Cooke, T.G.2    Pickford, I.R.3    Soutar, D.4    Balmain, A.5
  • 12
    • 0034907334 scopus 로고    scopus 로고
    • Detection of head and neck squamous cell carcinoma among exfoliated oral mucosal cells by microsatellite analysis
    • Spafford MF, Koch WM, Reed AL, Califano JA, Xu LH, et al. (2001) Detection of head and neck squamous cell carcinoma among exfoliated oral mucosal cells by microsatellite analysis. Clin Cancer Res 7: 607-612.
    • (2001) Clin Cancer Res , vol.7 , pp. 607-612
    • Spafford, M.F.1    Koch, W.M.2    Reed, A.L.3    Califano, J.A.4    Xu, L.H.5
  • 13
    • 56949095619 scopus 로고    scopus 로고
    • Chromosomal changes characterize head and neck cancer with poor prognosis
    • Bauer VL, Braselmann H, Henke M, Mattern D, Walch A, et al. (2008) Chromosomal changes characterize head and neck cancer with poor prognosis. J Mol Med 86: 1353-1365.
    • (2008) J Mol Med , vol.86 , pp. 1353-1365
    • Bauer, V.L.1    Braselmann, H.2    Henke, M.3    Mattern, D.4    Walch, A.5
  • 15
    • 0033933721 scopus 로고    scopus 로고
    • Genetic aberrations in oral or head and neck squamous cell carcinoma 2: Chromosomal aberrations
    • Scully C, Field JK, Tanzawa H (2000) Genetic aberrations in oral or head and neck squamous cell carcinoma 2: chromosomal aberrations. Oral Oncol 36: 311-327.
    • (2000) Oral Oncol , vol.36 , pp. 311-327
    • Scully, C.1    Field, J.K.2    Tanzawa, H.3
  • 16
    • 36749005527 scopus 로고    scopus 로고
    • Using expression profiling data to identify human microRNA targets
    • Huang JC, Babak T, Corson TW, Chua G, Khan S, et al. (2007) Using expression profiling data to identify human microRNA targets. Nat Methods 4: 1045-1049.
    • (2007) Nat Methods , vol.4 , pp. 1045-1049
    • Huang, J.C.1    Babak, T.2    Corson, T.W.3    Chua, G.4    Khan, S.5
  • 17
    • 29144505309 scopus 로고    scopus 로고
    • The widespread impact of mammalian MicroRNAs on mRNA repression and evolution
    • Farh KK, Grimson A, Jan C, Lewis BP, Johnston WK, et al. (2005) The widespread impact of mammalian MicroRNAs on mRNA repression and evolution. Science 310: 1817-1821.
    • (2005) Science , vol.310 , pp. 1817-1821
    • Farh, K.K.1    Grimson, A.2    Jan, C.3    Lewis, B.P.4    Johnston, W.K.5
  • 18
    • 20444460289 scopus 로고    scopus 로고
    • MicroRNA expression profiles classify human cancers
    • Lu J, Getz G, Miska EA, Alvarez-Saavedra E, Lamb J, et al. (2005) MicroRNA expression profiles classify human cancers. Nature 435: 834-838.
    • (2005) Nature , vol.435 , pp. 834-838
    • Lu, J.1    Getz, G.2    Miska, E.A.3    Alvarez-Saavedra, E.4    Lamb, J.5
  • 19
    • 51049123624 scopus 로고    scopus 로고
    • Genomic profiling of microRNA and messenger RNA reveals deregulated microRNA expression in prostate cancer
    • Ambs S, Prueitt RL, Yi M, Hudson RS, Howe TM, et al. (2008) Genomic profiling of microRNA and messenger RNA reveals deregulated microRNA expression in prostate cancer. Cancer Res 68: 6162-6170.
    • (2008) Cancer Res , vol.68 , pp. 6162-6170
    • Ambs, S.1    Prueitt, R.L.2    Yi, M.3    Hudson, R.S.4    Howe, T.M.5
  • 20
    • 58149239686 scopus 로고    scopus 로고
    • Genomic loss of microRNA-101 leads to overexpression of histone methyltransferase EZH2 in cancer
    • Varambally S, Cao Q, Mani RS, Shankar S, Wang X, et al. (2008) Genomic loss of microRNA-101 leads to overexpression of histone methyltransferase EZH2 in cancer. Science 322: 1695-1699.
    • (2008) Science , vol.322 , pp. 1695-1699
    • Varambally, S.1    Cao, Q.2    Mani, R.S.3    Shankar, S.4    Wang, X.5
  • 21
    • 3042515568 scopus 로고    scopus 로고
    • Selection and validation of differentially expressed genes in head and neck cancer
    • Kuriakose MA, Chen WT, He ZM, Sikora AG, Zhang P, et al. (2004) Selection and validation of differentially expressed genes in head and neck cancer. Cell Mol Life Sci 61: 1372-1383.
    • (2004) Cell Mol Life Sci , vol.61 , pp. 1372-1383
    • Kuriakose, M.A.1    Chen, W.T.2    He, Z.M.3    Sikora, A.G.4    Zhang, P.5
  • 22
    • 11144354901 scopus 로고    scopus 로고
    • Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis
    • Cromer A, Carles A, Millon R, Ganguli G, Chalmel F, et al. (2004) Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis. Oncogene 23: 2484-2498.
    • (2004) Oncogene , vol.23 , pp. 2484-2498
    • Cromer, A.1    Carles, A.2    Millon, R.3    Ganguli, G.4    Chalmel, F.5
  • 25
    • 0033001484 scopus 로고    scopus 로고
    • The prognostic significance of allelic imbalance at key chromosomal loci in oral cancer
    • Partridge M, Emilion G, Pateromichelakis S, A'Hern R, Lee G, et al. (1999) The prognostic significance of allelic imbalance at key chromosomal loci in oral cancer. Br J Cancer 79: 1821-1827.
    • (1999) Br J Cancer , vol.79 , pp. 1821-1827
    • Partridge, M.1    Emilion, G.2    Pateromichelakis, S.3    A'Hern, R.4    Lee, G.5
  • 26
    • 0026737285 scopus 로고
    • Occurrence of p53 gene deletions and human papilloma virus infection in human head and neck cancer
    • Brachman DG, Graves D, Vokes E, Beckett M, Haraf D, et al. (1992) Occurrence of p53 gene deletions and human papilloma virus infection in human head and neck cancer. Cancer Res 52: 4832-4836.
    • (1992) Cancer Res , vol.52 , pp. 4832-4836
    • Brachman, D.G.1    Graves, D.2    Vokes, E.3    Beckett, M.4    Haraf, D.5
  • 27
    • 41649119008 scopus 로고    scopus 로고
    • Distinctive microRNA signature of acute myeloid leukemia bearing cytoplasmic mutated nucleophosmin
    • Garzon R, Garofalo M, Martelli MP, Briesewitz R, Wang L, et al. (2008) Distinctive microRNA signature of acute myeloid leukemia bearing cytoplasmic mutated nucleophosmin. Proc Natl Acad Sci U S A 105: 3945-3950.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 3945-3950
    • Garzon, R.1    Garofalo, M.2    Martelli, M.P.3    Briesewitz, R.4    Wang, L.5
  • 28
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29.
    • (2000) Nat Genet , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3    Botstein, D.4    Butler, H.5
  • 29
    • 16344381521 scopus 로고    scopus 로고
    • Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks
    • Hahn MW, Kern AD (2005) Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks. Mol Biol Evol 22: 803-806.
    • (2005) Mol Biol Evol , vol.22 , pp. 803-806
    • Hahn, M.W.1    Kern, A.D.2
  • 30
    • 34247622363 scopus 로고    scopus 로고
    • The importance of bottlenecks in protein networks: Correlation with gene essentiality and expression dynamics
    • Yu H, Kim PM, Sprecher E, Trifonov V, Gerstein M (2007) The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics. PLoS Comput Biol 3: e59.
    • (2007) PLoS Comput Biol , vol.3
    • Yu, H.1    Kim, P.M.2    Sprecher, E.3    Trifonov, V.4    Gerstein, M.5
  • 31
    • 38649138295 scopus 로고    scopus 로고
    • A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans
    • Lee I, Lehner B, Crombie C, Wong W, Fraser AG, et al. (2008) A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans. Nat Genet 40: 181-188.
    • (2008) Nat Genet , vol.40 , pp. 181-188
    • Lee, I.1    Lehner, B.2    Crombie, C.3    Wong, W.4    Fraser, A.G.5
  • 32
    • 35349024501 scopus 로고    scopus 로고
    • Network modeling links breast cancer susceptibility and centrosome dysfunction
    • Pujana MA, Han JD, Starita LM, Stevens KN, Tewari M, et al. (2007) Network modeling links breast cancer susceptibility and centrosome dysfunction. Nat Genet 39: 1338-1349.
    • (2007) Nat Genet , vol.39 , pp. 1338-1349
    • Pujana, M.A.1    Han, J.D.2    Starita, L.M.3    Stevens, K.N.4    Tewari, M.5
  • 33
    • 33846675660 scopus 로고    scopus 로고
    • Global analysis of microRNA target gene expression reveals that miRNA targets are lower expressed in mature mouse and Drosophila tissues than in the embryos
    • Yu Z, Jian Z, Shen SH, Purisima E, Wang E (2007) Global analysis of microRNA target gene expression reveals that miRNA targets are lower expressed in mature mouse and Drosophila tissues than in the embryos. Nucleic Acids Res 35: 152-164.
    • (2007) Nucleic Acids Res , vol.35 , pp. 152-164
    • Yu, Z.1    Jian, Z.2    Shen, S.H.3    Purisima, E.4    Wang, E.5
  • 34
    • 33847348959 scopus 로고    scopus 로고
    • Coexpression of Arp2 and WAVE2 predicts poor outcome in invasive breast carcinoma
    • Iwaya K, Norio K, Mukai K (2007) Coexpression of Arp2 and WAVE2 predicts poor outcome in invasive breast carcinoma. Mod Pathol 20: 339-343.
    • (2007) Mod Pathol , vol.20 , pp. 339-343
    • Iwaya, K.1    Norio, K.2    Mukai, K.3
  • 35
    • 0036527896 scopus 로고    scopus 로고
    • Cathepsin expression in oral squamous cell carcinoma: Relationship with clinicopathologic factors
    • Kawasaki G, Kato Y, Mizuno A (2002) Cathepsin expression in oral squamous cell carcinoma: relationship with clinicopathologic factors. Oral Surg Oral Med Oral Pathol Oral Radiol Endod 93: 446-454.
    • (2002) Oral Surg Oral Med Oral Pathol Oral Radiol Endod , vol.93 , pp. 446-454
    • Kawasaki, G.1    Kato, Y.2    Mizuno, A.3
  • 36
    • 0038702525 scopus 로고    scopus 로고
    • Seprase complexes in cellular invasiveness
    • Chen WT, Kelly T (2003) Seprase complexes in cellular invasiveness. Cancer Metastasis Rev 22: 259-269.
    • (2003) Cancer Metastasis Rev , vol.22 , pp. 259-269
    • Chen, W.T.1    Kelly, T.2
  • 37
    • 0034934654 scopus 로고    scopus 로고
    • Expression of matrix metalloproteinases and their inhibitors correlates with invasion and metastasis in squamous cell carcinoma of the head and neck
    • P OC, Rhys-Evans PH, Eccles SA (2001) Expression of matrix metalloproteinases and their inhibitors correlates with invasion and metastasis in squamous cell carcinoma of the head and neck. Arch Otolaryngol Head Neck Surg 127: 813-820.
    • (2001) Arch Otolaryngol Head Neck Surg , vol.127 , pp. 813-820
    • Oc, P.1    Rhys-Evans, P.H.2    Eccles, S.A.3
  • 38
    • 34250873538 scopus 로고    scopus 로고
    • Mesenchymal cells contribute to the synthesis and deposition of the laminin-5 gamma2 chain in the invasive front of oral squamous cell carcinoma
    • Franz M, Richter P, Geyer C, Hansen T, Acuna LD, et al. (2007) Mesenchymal cells contribute to the synthesis and deposition of the laminin-5 gamma2 chain in the invasive front of oral squamous cell carcinoma. J Mol Histol 38: 183-190.
    • (2007) J Mol Histol , vol.38 , pp. 183-190
    • Franz, M.1    Richter, P.2    Geyer, C.3    Hansen, T.4    Acuna, L.D.5
  • 40
    • 11144322013 scopus 로고    scopus 로고
    • Expression of integrins and E-cadherin in squamous cell carcinomas of the head and neck
    • Eriksen JG, Steiniche T, Sogaard H, Overgaard J (2004) Expression of integrins and E-cadherin in squamous cell carcinomas of the head and neck. APMIS 112: 560-568.
    • (2004) APMIS , vol.112 , pp. 560-568
    • Eriksen, J.G.1    Steiniche, T.2    Sogaard, H.3    Overgaard, J.4
  • 41
    • 2342492313 scopus 로고    scopus 로고
    • Molecular classification of head and neck squamous cell carcinomas using patterns of gene expression
    • Chung CH, Parker JS, Karaca G, Wu J, Funkhouser WK, et al. (2004) Molecular classification of head and neck squamous cell carcinomas using patterns of gene expression. Cancer Cell 5: 489-500.
    • (2004) Cancer Cell , vol.5 , pp. 489-500
    • Chung, C.H.1    Parker, J.S.2    Karaca, G.3    Wu, J.4    Funkhouser, W.K.5
  • 42
    • 0344304770 scopus 로고    scopus 로고
    • Frequent loss of heterozygosity on chromosome 9 in Chinese esophageal squamous cell carcinomas
    • Lichun Y, Ching Tang CM, Wai Lau K, Lung ML (2004) Frequent loss of heterozygosity on chromosome 9 in Chinese esophageal squamous cell carcinomas. Cancer Lett 203: 71-77.
    • (2004) Cancer Lett , vol.203 , pp. 71-77
    • Lichun, Y.1    Ching Tang, C.M.2    Wai Lau, K.3    Lung, M.L.4
  • 43
    • 0028143078 scopus 로고
    • Difference of allelotype between squamous cell carcinoma and adenocarcinoma of the lung
    • Sato S, Nakamura Y, Tsuchiya E (1994) Difference of allelotype between squamous cell carcinoma and adenocarcinoma of the lung. Cancer Res 54: 5652-5655.
    • (1994) Cancer Res , vol.54 , pp. 5652-5655
    • Sato, S.1    Nakamura, Y.2    Tsuchiya, E.3
  • 44
    • 34547702505 scopus 로고    scopus 로고
    • Chromosomal rearrangements and microRNAs: A new cancer link with clinical implications
    • Calin GA, Croce CM (2007) Chromosomal rearrangements and microRNAs: a new cancer link with clinical implications. J Clin Invest 117: 2059-2066.
    • (2007) J Clin Invest , vol.117 , pp. 2059-2066
    • Calin, G.A.1    Croce, C.M.2
  • 46
    • 42049104107 scopus 로고    scopus 로고
    • Exploration of tumorsuppressive microRNAs silenced by DNA hypermethylation in oral cancer
    • Kozaki K, Imoto I, Mogi S, Omura K, Inazawa J (2008) Exploration of tumorsuppressive microRNAs silenced by DNA hypermethylation in oral cancer. Cancer Res 68: 2094-2105.
    • (2008) Cancer Res , vol.68 , pp. 2094-2105
    • Kozaki, K.1    Imoto, I.2    Mogi, S.3    Omura, K.4    Inazawa, J.5
  • 47
    • 70449712813 scopus 로고    scopus 로고
    • MicroRNA-138 suppresses invasion and promotes apoptosis in head and neck squamous cell carcinoma cell lines
    • Liu X, Jiang L, Wang A, Yu J, Shi F, et al. (2009) MicroRNA-138 suppresses invasion and promotes apoptosis in head and neck squamous cell carcinoma cell lines. Cancer Lett 286: 217-222.
    • (2009) Cancer Lett , vol.286 , pp. 217-222
    • Liu, X.1    Jiang, L.2    Wang, A.3    Yu, J.4    Shi, F.5
  • 49
    • 57349100487 scopus 로고    scopus 로고
    • MicroRNA alterations in head and neck squamous cell carcinoma
    • Chang SS, Jiang WW, Smith I, Poeta LM, Begum S, et al. (2008) MicroRNA alterations in head and neck squamous cell carcinoma. Int J Cancer 123: 2791-2797.
    • (2008) Int J Cancer , vol.123 , pp. 2791-2797
    • Chang, S.S.1    Jiang, W.W.2    Smith, I.3    Poeta, L.M.4    Begum, S.5
  • 50
    • 65249186738 scopus 로고    scopus 로고
    • MicroRNA expression ratio is predictive of head and neck squamous cell carcinoma
    • Avissar M, Christensen BC, Kelsey KT, Marsit CJ (2009) MicroRNA expression ratio is predictive of head and neck squamous cell carcinoma. Clin Cancer Res 15: 2850-2855.
    • (2009) Clin Cancer Res , vol.15 , pp. 2850-2855
    • Avissar, M.1    Christensen, B.C.2    Kelsey, K.T.3    Marsit, C.J.4
  • 51
    • 70450179727 scopus 로고    scopus 로고
    • Identification of a microRNA signature associated with progression of leukoplakia to oral carcinoma
    • Cervigne NK, Reis PP, Machado J, Sadikovic B, Bradley G, et al. (2009) Identification of a microRNA signature associated with progression of leukoplakia to oral carcinoma. Hum Mol Genet 18: 4818-4829.
    • (2009) Hum Mol Genet , vol.18 , pp. 4818-4829
    • Cervigne, N.K.1    Reis, P.P.2    Machado, J.3    Sadikovic, B.4    Bradley, G.5
  • 53
    • 77955357783 scopus 로고    scopus 로고
    • MicroRNA-204 Regulates Runx2 Protein Expression and Mesenchymal Progenitor Cell Differentiation
    • Huang J, Zhao L, Xing L, Chen D (2009) MicroRNA-204 Regulates Runx2 Protein Expression and Mesenchymal Progenitor Cell Differentiation. Stem Cells.
    • (2009) Stem Cells
    • Huang, J.1    Zhao, L.2    Xing, L.3    Chen, D.4
  • 54
    • 13944282215 scopus 로고    scopus 로고
    • Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
    • Lim LP, Lau NC, Garrett-Engele P, Grimson A, Schelter JM, et al. (2005) Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433: 769-773.
    • (2005) Nature , vol.433 , pp. 769-773
    • Lim, L.P.1    Lau, N.C.2    Garrett-Engele, P.3    Grimson, A.4    Schelter, J.M.5
  • 57
    • 33846045953 scopus 로고    scopus 로고
    • Principles of microRNA regulation of a human cellular signaling network
    • Cui Q, Yu Z, Purisima EO, Wang E (2006) Principles of microRNA regulation of a human cellular signaling network. Mol Syst Biol 2: 46.
    • (2006) Mol Syst Biol , vol.2 , pp. 46
    • Cui, Q.1    Yu, Z.2    Purisima, E.O.3    Wang, E.4
  • 58
    • 33845315897 scopus 로고    scopus 로고
    • MicroRNAs preferentially target the genes with high transcriptional regulation complexity
    • Cui Q, Yu Z, Pan Y, Purisima EO, Wang E (2007) MicroRNAs preferentially target the genes with high transcriptional regulation complexity. Biochem Biophys Res Commun 352: 733-738.
    • (2007) Biochem Biophys Res Commun , vol.352 , pp. 733-738
    • Cui, Q.1    Yu, Z.2    Pan, Y.3    Purisima, E.O.4    Wang, E.5
  • 59
    • 34548339681 scopus 로고    scopus 로고
    • MicroRNA regulation of human protein protein interaction network
    • Liang H, Li WH (2007) MicroRNA regulation of human protein protein interaction network. RNA 13: 1402-1408.
    • (2007) RNA , vol.13 , pp. 1402-1408
    • Liang, H.1    Li, W.H.2
  • 60
    • 63149121152 scopus 로고    scopus 로고
    • Circulating microRNAs, potential biomarkers for drug-induced liver injury
    • Wang K, Zhang S, Marzolf B, Troisch P, Brightman A, et al. (2009) Circulating microRNAs, potential biomarkers for drug-induced liver injury. Proc Natl Acad Sci U S A 106: 4402-4407.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 4402-4407
    • Wang, K.1    Zhang, S.2    Marzolf, B.3    Troisch, P.4    Brightman, A.5
  • 61
    • 33845884027 scopus 로고    scopus 로고
    • Integrative molecular concept modeling of prostate cancer progression
    • Tomlins SA, Mehra R, Rhodes DR, Cao X, Wang L, et al. (2007) Integrative molecular concept modeling of prostate cancer progression. Nat Genet 39: 41-51.
    • (2007) Nat Genet , vol.39 , pp. 41-51
    • Tomlins, S.A.1    Mehra, R.2    Rhodes, D.R.3    Cao, X.4    Wang, L.5
  • 63
    • 33847246805 scopus 로고    scopus 로고
    • Oncomine 3.0: Genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles
    • Rhodes DR, Kalyana-Sundaram S, Mahavisno V, Varambally R, Yu J, et al. (2007) Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles. Neoplasia 9: 166-180.
    • (2007) Neoplasia , vol.9 , pp. 166-180
    • Rhodes, D.R.1    Kalyana-Sundaram, S.2    Mahavisno, V.3    Varambally, R.4    Yu, J.5
  • 64
    • 70449375354 scopus 로고    scopus 로고
    • An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer
    • Wang XS, Prensner JR, Chen G, Cao Q, Han B, et al. (2009) An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer. Nat Biotechnol 27: 1005-1011.
    • (2009) Nat Biotechnol , vol.27 , pp. 1005-1011
    • Wang, X.S.1    Prensner, J.R.2    Chen, G.3    Cao, Q.4    Han, B.5
  • 67
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher VG, Tibshirani R, Chu G (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad SciUS A 98: 5116-5121.
    • (2001) Proc Natl Acad SciUS A , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 68
    • 17744413236 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application
    • RESEARCH0032
    • Li C, Hung Wong W (2001) Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application. Genome Biol 2: RESEARCH0032.
    • (2001) Genome Biol , vol.2
    • Li, C.1    Hung Wong, W.2
  • 71
    • 31044444975 scopus 로고    scopus 로고
    • TarBase: A comprehensive database of experimentally supported animal microRNA targets
    • Sethupathy P, Corda B, Hatzigeorgiou AG (2006) TarBase: A comprehensive database of experimentally supported animal microRNA targets. RNA 12: 192-197.
    • (2006) RNA , vol.12 , pp. 192-197
    • Sethupathy, P.1    Corda, B.2    Hatzigeorgiou, A.G.3
  • 72
    • 33748711623 scopus 로고    scopus 로고
    • OrderedList-a bioconductor package for detecting similarity in ordered gene lists
    • Lottaz C, Yang X, Scheid S, Spang R (2006) OrderedList-a bioconductor package for detecting similarity in ordered gene lists. Bioinformatics 22: 2315-2316.
    • (2006) Bioinformatics , vol.22 , pp. 2315-2316
    • Lottaz, C.1    Yang, X.2    Scheid, S.3    Spang, R.4
  • 74
    • 20844431881 scopus 로고    scopus 로고
    • Twilight; a Bioconductor package for estimating the local false discovery rate
    • Scheid S, Spang R (2005) twilight; a Bioconductor package for estimating the local false discovery rate. Bioinformatics 21: 2921-2922.
    • (2005) Bioinformatics , vol.21 , pp. 2921-2922
    • Scheid, S.1    Spang, R.2
  • 75
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Hochberg (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society B 57: 289-300.
    • (1995) Journal of The Royal Statistical Society B , vol.57 , pp. 289-300
    • Benjamini, H.1
  • 76
    • 0040920369 scopus 로고    scopus 로고
    • McKusick-Nathans Institute of Genetic Medicine JHUB, MD) and National Center for Biotechnology Information, National Library of Medicine (Bethesda, MD) (downloaded Dec. 1, 2006)
    • McKusick-Nathans Institute of Genetic Medicine JHUB, MD) and National Center for Biotechnology Information, National Library of Medicine (Bethesda, MD) (downloaded Dec. 1, 2006) Online Mendelian Inheritance in Man, OMIM (TM).
    • Online Mendelian Inheritance in Man, OMIM (TM)
  • 78
    • 18744389489 scopus 로고    scopus 로고
    • Significance analysis of functional categories in gene expression studies: A structured permutation approach
    • Barry WT, Nobel AB, Wright FA (2005) Significance analysis of functional categories in gene expression studies: a structured permutation approach. Bioinformatics 21: 1943-1949.
    • (2005) Bioinformatics , vol.21 , pp. 1943-1949
    • Barry, W.T.1    Nobel, A.B.2    Wright, F.A.3
  • 79
    • 33847173733 scopus 로고    scopus 로고
    • FUNC: A package for detecting significant associations between gene sets and ontological annotations
    • Prufer K, Muetzel B, Do HH, Weiss G, Khaitovich P, et al. (2007) FUNC: a package for detecting significant associations between gene sets and ontological annotations. BMC Bioinformatics 8: 41.
    • (2007) BMC Bioinformatics , vol.8 , pp. 41
    • Prufer, K.1    Muetzel, B.2    Do, H.H.3    Weiss, G.4    Khaitovich, P.5
  • 80
    • 33751195256 scopus 로고    scopus 로고
    • Topological basis of signal integration in the transcriptional-regulatory network of the yeast, Saccharomyces cerevisiae
    • Farkas IJ, Wu C, Chennubhotla C, Bahar I, Oltvai ZN (2006) Topological basis of signal integration in the transcriptional-regulatory network of the yeast, Saccharomyces cerevisiae. BMC Bioinformatics 7: 478.
    • (2006) BMC Bioinformatics , vol.7 , pp. 478
    • Farkas, I.J.1    Wu, C.2    Chennubhotla, C.3    Bahar, I.4    Oltvai, Z.N.5
  • 81
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabasi AL, Oltvai ZN (2004) Network biology: understanding the cell's functional organization. Nat Rev Genet 5: 101-113.
    • (2004) Nat Rev Genet , vol.5 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 83
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • Barabasi AL, Albert R (1999) Emergence of scaling in random networks. Science 286: 509-512.
    • (1999) Science , vol.286 , pp. 509-512
    • Barabasi, A.L.1    Albert, R.2
  • 84
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13: 2498-2504.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5
  • 85
    • 1242319531 scopus 로고    scopus 로고
    • STAT1 is overexpressed in tumors selected for radioresistance and confers protection from radiation in transduced sensitive cells
    • Khodarev NN, Beckett M, Labay E, Darga T, Roizman B, et al. (2004) STAT1 is overexpressed in tumors selected for radioresistance and confers protection from radiation in transduced sensitive cells. Proc Natl Acad Sci U S A 101: 1714-1719.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 1714-1719
    • Khodarev, N.N.1    Beckett, M.2    Labay, E.3    Darga, T.4    Roizman, B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.