메뉴 건너뛰기




Volumn 107, Issue 17, 2010, Pages 7716-7721

Why Hofmeister effects of many salts favor protein folding but not DNA helix formation

Author keywords

Hofmeister salts; m values; Thermodynamics

Indexed keywords

HYDROCARBON; SODIUM CHLORIDE;

EID: 77952394693     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0913376107     Document Type: Article
Times cited : (154)

References (55)
  • 1
    • 33745503743 scopus 로고
    • Ion effects on the solution structure of biological macromolecules
    • von Hippel PH, Schleich T (1969) Ion effects on the solution structure of biological macromolecules. Accounts Chem Res 2:257-265.
    • (1969) Accounts Chem Res , vol.2 , pp. 257-265
    • Von Hippel, P.H.1    Schleich, T.2
  • 2
    • 0019886912 scopus 로고
    • Ion effects on the lac repressor - Operator equilibrium
    • Barkley MD, Lewis PA, Sullivan GE (1981) Ion effects on the lac repressor - operator equilibrium. Biochemistry 20:3842-3851.
    • (1981) Biochemistry , vol.20 , pp. 3842-3851
    • Barkley, M.D.1    Lewis, P.A.2    Sullivan, G.E.3
  • 3
    • 0029792830 scopus 로고    scopus 로고
    • How Hofmeister ion interactions affect protein stability
    • Baldwin RL (1996) How Hofmeister ion interactions affect protein stability. Biophys J 71:2056-2063.
    • (1996) Biophys J , vol.71 , pp. 2056-2063
    • Baldwin, R.L.1
  • 4
    • 0031778590 scopus 로고    scopus 로고
    • Control of protein stability and reactions by weakly interacting cosolvents: The simplicity of the complicated
    • Timasheff SN (1998) Control of protein stability and reactions by weakly interacting cosolvents: The simplicity of the complicated. Adv Protein Chem 51:355-432.
    • (1998) Adv Protein Chem , vol.51 , pp. 355-432
    • Timasheff, S.N.1
  • 5
    • 0031776135 scopus 로고    scopus 로고
    • Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: A practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts
    • Record MT, Zhang W, Anderson CF (1998) Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: A practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts. Adv Protein Chem 51:281-353.
    • (1998) Adv Protein Chem , vol.51 , pp. 281-353
    • Record, M.T.1    Zhang, W.2    Anderson, C.F.3
  • 6
    • 33645971001 scopus 로고    scopus 로고
    • Effects of monovalent anions on a temperature-dependent heat capacity change for Escherichia coli SSB tetramer binding to single-stranded DNA
    • Kozlov AG, Lohman TM (2006) Effects of monovalent anions on a temperature-dependent heat capacity change for Escherichia coli SSB tetramer binding to single-stranded DNA. Biochemistry 45:5190-5205.
    • (2006) Biochemistry , vol.45 , pp. 5190-5205
    • Kozlov, A.G.1    Lohman, T.M.2
  • 7
    • 34247513828 scopus 로고
    • Zur lehre von der wirkung der salze
    • Hofmeister F (1888) Zur lehre von der wirkung der salze. Arch Exp Pathol Pharmakol 24:247-260.
    • (1888) Arch Exp Pathol Pharmakol , vol.24 , pp. 247-260
    • Hofmeister, F.1
  • 8
    • 0003078391 scopus 로고
    • Phase-boundary forces and adsorption at the interface air: Solutions of inorganic salts
    • Frumkin A (1924) Phase-boundary forces and adsorption at the interface air: Solutions of inorganic salts. Z Phys Chem 109:34-48.
    • (1924) Z Phys Chem , vol.109 , pp. 34-48
    • Frumkin, A.1
  • 9
    • 33846080680 scopus 로고
    • Surface potentials of aqueous electrolyte solutions
    • Jarvis NL, Scheiman MA (1968) Surface potentials of aqueous electrolyte solutions. J Phys Chem 72:74-78.
    • (1968) J Phys Chem , vol.72 , pp. 74-78
    • Jarvis, N.L.1    Scheiman, M.A.2
  • 10
    • 33947454326 scopus 로고
    • The activity coefficient of benzene in aqueous salt solutions
    • Long FA, McDevit WF (1952) The activity coefficient of benzene in aqueous salt solutions. J Am Chem Soc 74:1773-1777.
    • (1952) J Am Chem Soc , vol.74 , pp. 1773-1777
    • Long, F.A.1    McDevit, W.F.2
  • 11
    • 0015520388 scopus 로고
    • The effects of salts on the free energy of the peptide group
    • Nandi PK, Robinson DR (1972) The effects of salts on the free energy of the peptide group. J Am Chem Soc 94:1299-1308.
    • (1972) J Am Chem Soc , vol.94 , pp. 1299-1308
    • Nandi, P.K.1    Robinson, D.R.2
  • 12
    • 0015228145 scopus 로고
    • Effects of ionic protein denaturants on micelle formation by nonionic detergents
    • Ray A, Némethy G (1971) Effects of ionic protein denaturants on micelle formation by nonionic detergents. J Am Chem Soc 93:6787-6793.
    • (1971) J Am Chem Soc , vol.93 , pp. 6787-6793
    • Ray, A.1    Némethy, G.2
  • 13
  • 14
    • 0009940455 scopus 로고
    • Neutral salts. The generality of their effects on the stability of macromolecular conformations
    • von Hippel PH, Wong KY (1964) Neutral salts. The generality of their effects on the stability of macromolecular conformations. Science 145:577-580.
    • (1964) Science , vol.145 , pp. 577-580
    • Von Hippel, P.H.1    Wong, K.Y.2
  • 15
    • 0014082417 scopus 로고
    • The salting-out behavior of amides and its relation to the denaturation of proteins by salts
    • Schrier EE, Schrier EB (1967) The salting-out behavior of amides and its relation to the denaturation of proteins by salts. J Phys Chem 71:1851-1860.
    • (1967) J Phys Chem , vol.71 , pp. 1851-1860
    • Schrier, E.E.1    Schrier, E.B.2
  • 16
    • 0020477047 scopus 로고
    • Preferential interactions of proteins with salts in concentrated solutions
    • Arakawa T, Timasheff SN (1982) Preferential interactions of proteins with salts in concentrated solutions. Biochemistry 21:6545-6552.
    • (1982) Biochemistry , vol.21 , pp. 6545-6552
    • Arakawa, T.1    Timasheff, S.N.2
  • 17
    • 49649112395 scopus 로고    scopus 로고
    • Thermodynamic origin of Hofmeister ion effects
    • Pegram LM, Record MT (2008) Thermodynamic origin of Hofmeister ion effects. J Phys Chem B 112:9428-9436.
    • (2008) J Phys Chem B , vol.112 , pp. 9428-9436
    • Pegram, L.M.1    Record, M.T.2
  • 18
    • 0015937192 scopus 로고
    • Model studies on the effects of neutral salts on the conformational stability of biological macromolecules. II. Effects of vicinal hydrophobic groups on the specificity of binding of ions to amide groups
    • Hamabata A, von Hippel PH (1973) Model studies on the effects of neutral salts on the conformational stability of biological macromolecules. II. Effects of vicinal hydrophobic groups on the specificity of binding of ions to amide groups. Biochemistry 12:1264-1271.
    • (1973) Biochemistry , vol.12 , pp. 1264-1271
    • Hamabata, A.1    Von Hippel, P.H.2
  • 19
    • 0035176391 scopus 로고    scopus 로고
    • Thermodynamics of interactions of urea and guanidinium salts with protein surface: Relationship between solute effects on protein processes and changes in water-accessible surface area
    • Courtenay ES, Capp MW, Record MT (2001) Thermodynamics of interactions of urea and guanidinium salts with protein surface: Relationship between solute effects on protein processes and changes in water-accessible surface area. Protein Sci 10:2485-2497.
    • (2001) Protein Sci , vol.10 , pp. 2485-2497
    • Courtenay, E.S.1    Capp, M.W.2    Record, M.T.3
  • 20
    • 29344437812 scopus 로고    scopus 로고
    • Use of urea and glycine betaine to quantify coupled folding and probe the burial of DNA phosphates in lac repressor-lac operator binding
    • Hong J, Capp MW, Saecker RM, Record MT (2005) Use of urea and glycine betaine to quantify coupled folding and probe the burial of DNA phosphates in lac repressor-lac operator binding. Biochemistry 44:16896-16911.
    • (2005) Biochemistry , vol.44 , pp. 16896-16911
    • Hong, J.1    Capp, M.W.2    Saecker, R.M.3    Record, M.T.4
  • 21
    • 0033614819 scopus 로고    scopus 로고
    • Enthalpy and heat capacity changes for formation of an oligomeric DNA duplex: Interpretation in terms of coupled processes of formation and association of single-stranded helices
    • Holbrook JA, Capp MW, Saecker RM, Record MT (1999) Enthalpy and heat capacity changes for formation of an oligomeric DNA duplex: Interpretation in terms of coupled processes of formation and association of single-stranded helices. Biochemistry 38:8409-8422.
    • (1999) Biochemistry , vol.38 , pp. 8409-8422
    • Holbrook, J.A.1    Capp, M.W.2    Saecker, R.M.3    Record, M.T.4
  • 22
    • 0001221509 scopus 로고
    • The effect of electrolytes on the stability of the deoxyribonucleate helix
    • Hamaguchi K, Geiduschek EP (1962) The effect of electrolytes on the stability of the deoxyribonucleate helix. J Am Chem Soc 84:1329-1338.
    • (1962) J Am Chem Soc , vol.84 , pp. 1329-1338
    • Hamaguchi, K.1    Geiduschek, E.P.2
  • 23
    • 1642300886 scopus 로고
    • Salt effects on the denaturation of DNA
    • Gruenwedel DW, Hsu C-H (1969) Salt effects on the denaturation of DNA. Biopolymers 7:557-570.
    • (1969) Biopolymers , vol.7 , pp. 557-570
    • Gruenwedel, D.W.1    Hsu, C.-H.2
  • 24
    • 0014981036 scopus 로고
    • The effects of aqueous neutral-salt solutions on the melting temperatures of deoxyribonucleic acids
    • Gruenwedel DW, Hsu CH, Lu DS (1971) The effects of aqueous neutral-salt solutions on the melting temperatures of deoxyribonucleic acids. Biopolymers 10:47-68.
    • (1971) Biopolymers , vol.10 , pp. 47-68
    • Gruenwedel, D.W.1    Hsu, C.H.2    Lu, D.S.3
  • 25
    • 0037465426 scopus 로고    scopus 로고
    • Thermal and urea-induced unfolding of the marginally stable lac repressor DNA-binding domain: A model system for analysis of solute effects on protein processes
    • Felitsky DJ, Record MT (2003) Thermal and urea-induced unfolding of the marginally stable lac repressor DNA-binding domain: A model system for analysis of solute effects on protein processes. Biochemistry 42:2202-2217.
    • (2003) Biochemistry , vol.42 , pp. 2202-2217
    • Felitsky, D.J.1    Record, M.T.2
  • 27
    • 20444458780 scopus 로고    scopus 로고
    • -) exclusion in mixed salt solutions of polyanionic DNA using Monte Carlo and Poisson-Boltzmann calculations of ionpolyion preferential interaction coefficients
    • -) exclusion in mixed salt solutions of polyanionic DNA using Monte Carlo and Poisson-Boltzmann calculations of ionpolyion preferential interaction coefficients. J Phys Chem B 103:3489-3504.
    • (1999) J Phys Chem B , vol.103 , pp. 3489-3504
    • Ni, H.H.1    Anderson, C.F.2    Record, M.T.3
  • 28
    • 0033772098 scopus 로고    scopus 로고
    • Thermodynamic analysis of interactions between denaturants and protein surface exposed on unfolding: Interpretation of urea and guanidinium chloride m-values and their correlation with changes in accessible surface area (ASA) using preferential interaction coefficients and the local-bulk domain model
    • Courtenay ES, Capp MW, Saecker RM, Record MT (2000) Thermodynamic analysis of interactions between denaturants and protein surface exposed on unfolding: Interpretation of urea and guanidinium chloride m-values and their correlation with changes in accessible surface area (ASA) using preferential interaction coefficients and the local-bulk domain model. Proteins: Struct, Funct, Genet 41:72-85.
    • (2000) Proteins: Struct, Funct, Genet , vol.41 , pp. 72-85
    • Courtenay, E.S.1    Capp, M.W.2    Saecker, R.M.3    Record, M.T.4
  • 29
    • 8744225646 scopus 로고    scopus 로고
    • The exclusion of glycine betaine from anionic biopolymer surface: Why glycine betaine is an effective osmoprotectant but also a compatible solute
    • Felitsky DJ, et al. (2004) The exclusion of glycine betaine from anionic biopolymer surface: Why glycine betaine is an effective osmoprotectant but also a compatible solute. Biochemistry 43:14732-14743.
    • (2004) Biochemistry , vol.43 , pp. 14732-14743
    • Felitsky, D.J.1
  • 30
    • 34548270876 scopus 로고    scopus 로고
    • Urea-amide preferential interactions in water: Quantitative comparison of model compound data with biopolymer results using water accessible surface areas
    • Cannon JG, Anderson CF, Record MT (2007) Urea-amide preferential interactions in water: Quantitative comparison of model compound data with biopolymer results using water accessible surface areas. J Phys Chem B 111:9675-9685.
    • (2007) J Phys Chem B , vol.111 , pp. 9675-9685
    • Cannon, J.G.1    Anderson, C.F.2    Record, M.T.3
  • 31
    • 70350513011 scopus 로고    scopus 로고
    • Quantifying interactions of the osmolyte glycine betaine with molecular surfaces in water: Thermodynamics, structural interpretation, and prediction of m-values
    • Capp MW, et al. (2009) Quantifying interactions of the osmolyte glycine betaine with molecular surfaces in water: Thermodynamics, structural interpretation, and prediction of m-values. Biochemistry 48:10372-10379.
    • (2009) Biochemistry , vol.48 , pp. 10372-10379
    • Capp, M.W.1
  • 32
    • 0000412815 scopus 로고
    • The effect of ions on the kinetics of formation and the stability of the collagenfold
    • Von Hippel PH, Wong KY (1962) The effect of ions on the kinetics of formation and the stability of the collagenfold. Biochemistry 1:664-674.
    • (1962) Biochemistry , vol.1 , pp. 664-674
    • Von Hippel, P.H.1    Wong, K.Y.2
  • 34
    • 33749603042 scopus 로고    scopus 로고
    • Thermal stability landscape for Klenow DNA polymerase as a function of pH and salt concentration
    • Richard AJ, et al. (2006) Thermal stability landscape for Klenow DNA polymerase as a function of pH and salt concentration. BBA-Proteins Proteom 1764:1546-1552.
    • (2006) BBA-Proteins Proteom , vol.1764 , pp. 1546-1552
    • Richard, A.J.1
  • 35
    • 53649084467 scopus 로고    scopus 로고
    • Effect of Hofmeister ions on protein thermal stability: Roles of ion hydration and peptide groups
    • Sedlak E, Stagg L, Wittung-Stafshede P (2008) Effect of Hofmeister ions on protein thermal stability: Roles of ion hydration and peptide groups. Arch Biochem Biophys 479:69-73.
    • (2008) Arch Biochem Biophys , vol.479 , pp. 69-73
    • Sedlak, E.1    Stagg, L.2    Wittung-Stafshede, P.3
  • 36
    • 72249118262 scopus 로고    scopus 로고
    • Protein stabilization and the Hofmeister effect: The role of hydrophobic solvation
    • Tadeo X, Lopez-Mendez B, Castano D, Trigueros T, Millet O (2009) Protein stabilization and the Hofmeister effect: The role of hydrophobic solvation. Biophys J 97:2595-2603.
    • (2009) Biophys J , vol.97 , pp. 2595-2603
    • Tadeo, X.1    Lopez-Mendez, B.2    Castano, D.3    Trigueros, T.4    Millet, O.5
  • 37
    • 0027247584 scopus 로고
    • Perchlorate-induced denaturation of ribonuclease A: Investigation of possible folding intermediates
    • Scholtz JM, Baldwin RL (1993) Perchlorate-induced denaturation of ribonuclease A: Investigation of possible folding intermediates. Biochemistry 32:4604-4608.
    • (1993) Biochemistry , vol.32 , pp. 4604-4608
    • Scholtz, J.M.1    Baldwin, R.L.2
  • 38
    • 0035887192 scopus 로고    scopus 로고
    • Chaotropic anions strongly stabilize short, N-capped uncharged peptide helicies: A new look at the perchlorate effect
    • DOI 10.1002/1521-3773(20011015)40:20<3819::AID-ANIE3819>3.0.CO;2-S
    • Maison W, Kennedy R, Kemp D (2001) Chaotropic anions strongly stabilize short, n-capped uncharged peptide helicies: A new look at the perchlorate effect. Angew Chem Int Ed Engl 40:3819-3821. (Pubitemid 33009567)
    • (2001) Angewandte Chemie - International Edition , vol.40 , Issue.20 , pp. 3819-3821
    • Maison, W.1    Kennedy, R.J.2    Kemp, D.S.3
  • 39
    • 33845408125 scopus 로고    scopus 로고
    • Sequence-specific solvent accessibilities of protein residues in unfolded protein ensembles
    • DOI 10.1529/biophysj.106.087528
    • Bernado P, Blackledge M, Sancho J (2006) Sequence-specific solvent accessibilities of protein residues in unfolded protein ensembles. Biophys J 91:4536-4543. (Pubitemid 44904238)
    • (2006) Biophysical Journal , vol.91 , Issue.12 , pp. 4536-4543
    • Bernado, P.1    Blackledge, M.2    Sancho, J.3
  • 40
    • 65449171120 scopus 로고    scopus 로고
    • ProtSA: A web application for calculating sequence specific protein solvent accessibilities in the unfolded ensemble
    • Estrada J, Bernadó P, Blackledge M, Sancho J (2009) ProtSA: A web application for calculating sequence specific protein solvent accessibilities in the unfolded ensemble. BMC Bioinformatics 10:104-111.
    • (2009) BMC Bioinformatics , vol.10 , pp. 104-111
    • Estrada, J.1    Bernadó, P.2    Blackledge, M.3    Sancho, J.4
  • 42
    • 0033954256 scopus 로고    scopus 로고
    • The Protein Data Bank
    • Berman HM, et al. (2000) The Protein Data Bank. Nucleic Acids Res 28:235-242.
    • (2000) Nucleic Acids Res , vol.28 , pp. 235-242
    • Berman, H.M.1
  • 43
    • 3142657230 scopus 로고    scopus 로고
    • Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes
    • Kalodimos CG, et al. (2004) Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes. Science 305:386-389.
    • (2004) Science , vol.305 , pp. 386-389
    • Kalodimos, C.G.1
  • 45
    • 0038115064 scopus 로고    scopus 로고
    • Negligible effect of ions on the hydrogen-bond structure in liquid water
    • DOI 10.1126/science.1084801
    • Omta AW, Kropman MF, Woutersen S, Bakker HJ (2003) Negligible effect of ions on the hydrogen-bond structure in liquid water. Science 301:347-349. (Pubitemid 36877064)
    • (2003) Science , vol.301 , Issue.5631 , pp. 347-349
    • Omta, A.W.1    Kropman, M.F.2    Woutersen, S.3    Bakker, H.J.4
  • 46
    • 0038115064 scopus 로고    scopus 로고
    • Negligible effect of ions on the hydrogen-bond structure in liquid water
    • DOI 10.1126/science.1084801
    • Omta AW, Kropman MF, Woutersen S, Bakker HJ (2003) Influence of ions on the hydrogen-bond structure in liquid water. J Chem Phys 119:12457-12461. (Pubitemid 36877064)
    • (2003) Science , vol.301 , Issue.5631 , pp. 347-349
    • Omta, A.W.1    Kropman, M.F.2    Woutersen, S.3    Bakker, H.J.4
  • 47
    • 0015520434 scopus 로고
    • The effects of salts on the free energies of nonpolar groups in model peptides
    • Nandi PK, Robinson DR (1972) The effects of salts on the free energies of nonpolar groups in model peptides. J Am Chem Soc 94:1308-1315.
    • (1972) J Am Chem Soc , vol.94 , pp. 1308-1315
    • Nandi, P.K.1    Robinson, D.R.2
  • 48
    • 0015937176 scopus 로고
    • Model studies on the effects of neutral salts on the conformational stability of biological macromolecules. I. Ion binding to polyacrylamide and polystyrene columns
    • von Hippel PH, Peticolas V, Schack L, Karlson L (1973) Model studies on the effects of neutral salts on the conformational stability of biological macromolecules. I. Ion binding to polyacrylamide and polystyrene columns. Biochemistry 12:1256-1264.
    • (1973) Biochemistry , vol.12 , pp. 1256-1264
    • Von Hippel, P.H.1    Peticolas, V.2    Schack, L.3    Karlson, L.4
  • 49
    • 33745306431 scopus 로고    scopus 로고
    • The Hofmeister series and protein-salt interactions
    • Shimizu S, McLaren WM, Matubayasi N (2006) The Hofmeister series and protein-salt interactions. J Chem Phys 124:234905.
    • (2006) J Chem Phys , vol.124 , pp. 234905
    • Shimizu, S.1    McLaren, W.M.2    Matubayasi, N.3
  • 50
    • 33751408436 scopus 로고    scopus 로고
    • Interactions between macromolecules and ions: The Hofmeister series
    • DOI 10.1016/j.cbpa.2006.09.020, PII S1367593106001517
    • Zhang Y, Cremer PS (2006) Interactions between macromolecules and ions: The Hofmeister series. Curr Opin Chem Biol 10:658-663. (Pubitemid 44821892)
    • (2006) Current Opinion in Chemical Biology , vol.10 , Issue.6 , pp. 658-663
    • Zhang, Y.1    Cremer, P.S.2
  • 51
    • 51349165268 scopus 로고    scopus 로고
    • Specific ion binding to nonpolar surface patches of proteins
    • Lund M, Vrbka L, Jungwirth P (2008) Specific ion binding to nonpolar surface patches of proteins. J Am Chem Soc 130:11582-11583.
    • (2008) J Am Chem Soc , vol.130 , pp. 11582-11583
    • Lund, M.1    Vrbka, L.2    Jungwirth, P.3
  • 52
    • 33749254795 scopus 로고    scopus 로고
    • Partitioning of atmospherically relevant ions between bulk water and the water/vapor interface
    • Pegram LM, Record MT (2006) Partitioning of atmospherically relevant ions between bulk water and the water/vapor interface. Proc Natl Acad Sci USA 103:14278-14281.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 14278-14281
    • Pegram, L.M.1    Record, M.T.2
  • 53
    • 34249830163 scopus 로고    scopus 로고
    • Hofmeister salt effects on surface tension arise from partitioning of anions and cations between bulk water and the air-water interface
    • Pegram LM, Record MT (2007) Hofmeister salt effects on surface tension arise from partitioning of anions and cations between bulk water and the air-water interface. J Phys Chem B 111:5411-5417.
    • (2007) J Phys Chem B , vol.111 , pp. 5411-5417
    • Pegram, L.M.1    Record, M.T.2
  • 54
    • 0037197254 scopus 로고    scopus 로고
    • Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature
    • Tsodikov OV, Record MT, Sergeev YV (2002) Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature. J Comput Chem 23:600-609.
    • (2002) J Comput Chem , vol.23 , pp. 600-609
    • Tsodikov, O.V.1    Record, M.T.2    Sergeev, Y.V.3
  • 55
    • 0025906146 scopus 로고
    • Contribution to the thermodynamics of protein folding from the reduction in water-accessible nonpolar surface area
    • Livingstone JR, Spolar RS, Record MT (1991) Contribution to the thermodynamics of protein folding from the reduction in water-accessible nonpolar surface area. Biochemistry 30:4237-4244.
    • (1991) Biochemistry , vol.30 , pp. 4237-4244
    • Livingstone, J.R.1    Spolar, R.S.2    Record, M.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.