-
1
-
-
63249117139
-
The role of predictive modeling in rationally re-engineering biological systems
-
2734281, 19252506
-
Koide T, Pang WL, Baliga NS. The role of predictive modeling in rationally re-engineering biological systems. Nat Rev Microbiol 2009, 7:297-305. 2734281, 19252506.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 297-305
-
-
Koide, T.1
Pang, W.L.2
Baliga, N.S.3
-
2
-
-
54249124501
-
Learning biological networks: from modules to dynamics
-
10.1038/nchembio.122, 18936750
-
Bonneau R. Learning biological networks: from modules to dynamics. Nat Chem Biol 2008, 4:658-664. 10.1038/nchembio.122, 18936750.
-
(2008)
Nat Chem Biol
, vol.4
, pp. 658-664
-
-
Bonneau, R.1
-
3
-
-
67149141513
-
Learning global models of transcriptional regulatory networks from data
-
Madar A, Bonneau R. Learning global models of transcriptional regulatory networks from data. Methods Mol Biol 2009, 541:181.
-
(2009)
Methods Mol Biol
, vol.541
, pp. 181
-
-
Madar, A.1
Bonneau, R.2
-
4
-
-
37349099750
-
A predictive model for transcriptional control of physiology in a free living cell
-
10.1016/j.cell.2007.10.053, 18160043
-
Bonneau R, Facciotti MT, Reiss DJ, Schmid AK, Pan M, Kaur A, Thorsson V, Shannon P, Johnson MH, Bare JC, Longabaugh W, Vuthoori M, Whitehead K, Madar A, Suzuki L, Mori T, Chang DE, Diruggiero J, Johnson CH, Hood L, Baliga NS. A predictive model for transcriptional control of physiology in a free living cell. Cell 2007, 131:1354-1365. 10.1016/j.cell.2007.10.053, 18160043.
-
(2007)
Cell
, vol.131
, pp. 1354-1365
-
-
Bonneau, R.1
Facciotti, M.T.2
Reiss, D.J.3
Schmid, A.K.4
Pan, M.5
Kaur, A.6
Thorsson, V.7
Shannon, P.8
Johnson, M.H.9
Bare, J.C.10
Longabaugh, W.11
Vuthoori, M.12
Whitehead, K.13
Madar, A.14
Suzuki, L.15
Mori, T.16
Chang, D.E.17
Diruggiero, J.18
Johnson, C.H.19
Hood, L.20
Baliga, N.S.21
more..
-
5
-
-
33846400424
-
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
-
10.1371/journal.pbio.0050008, 1764438,1764438, 17214507
-
Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, Kasif S, Collins JJ, Gardner TS. Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. PLoS Biol 2007, 5:e8. 10.1371/journal.pbio.0050008, 1764438,1764438, 17214507.
-
(2007)
PLoS Biol
, vol.5
-
-
Faith, J.J.1
Hayete, B.2
Thaden, J.T.3
Mogno, I.4
Wierzbowski, J.5
Cottarel, G.6
Kasif, S.7
Collins, J.J.8
Gardner, T.S.9
-
6
-
-
51149166168
-
The Bacterial Growth Curve and the History of Species
-
Corbet AS. The Bacterial Growth Curve and the History of Species. Nature 1933, 131:61-62.
-
(1933)
Nature
, vol.131
, pp. 61-62
-
-
Corbet, A.S.1
-
7
-
-
0032796420
-
Bacterial growth: constant obsession with dN/dt
-
94194, 10601194
-
Neidhardt FC. Bacterial growth: constant obsession with dN/dt. J Bacteriol 1999, 181:7405-7408. 94194, 10601194.
-
(1999)
J Bacteriol
, vol.181
, pp. 7405-7408
-
-
Neidhardt, F.C.1
-
8
-
-
77953917271
-
The Rise and Fall of Bacterial Population
-
Chicago, IL: University of Chicago Press
-
Winslow C-EA. The Rise and Fall of Bacterial Population. The Newer Knowledge of Bacteriology and Immunology 1928, 58-83. Chicago, IL: University of Chicago Press.
-
(1928)
The Newer Knowledge of Bacteriology and Immunology
, pp. 58-83
-
-
Winslow, C.-.E.A.1
-
9
-
-
3042615963
-
Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1
-
10.1101/gr.1993504, 419780, 15140832
-
Baliga NS, Bjork SJ, Bonneau R, Pan M, Iloanusi C, Kottemann MC, Hood L, DiRuggiero J. Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1. Genome Res 2004, 14:1025-1035. 10.1101/gr.1993504, 419780, 15140832.
-
(2004)
Genome Res
, vol.14
, pp. 1025-1035
-
-
Baliga, N.S.1
Bjork, S.J.2
Bonneau, R.3
Pan, M.4
Iloanusi, C.5
Kottemann, M.C.6
Hood, L.7
DiRuggiero, J.8
-
10
-
-
36048979618
-
Transcriptional profiling of the model Archaeon Halobacterium sp. NRC-1: responses to changes in salinity and temperature
-
10.1186/1746-1448-3-6, 1971269, 17651475
-
Coker JA, Dassarma P, Kumar J, Müller JA, Dassarma S. Transcriptional profiling of the model Archaeon Halobacterium sp. NRC-1: responses to changes in salinity and temperature. Saline Systems 2007, 3:6. 10.1186/1746-1448-3-6, 1971269, 17651475.
-
(2007)
Saline Systems
, vol.3
, pp. 6
-
-
Coker, J.A.1
Dassarma, P.2
Kumar, J.3
Müller, J.A.4
Dassarma, S.5
-
11
-
-
33745619803
-
A systems view of haloarchaeal strategies to withstand stress from transition metals
-
10.1101/gr.5189606, 1484451, 16751342
-
Kaur A, Pan M, Meislin M, Facciotti MT, El-Gewely R, Baliga NS. A systems view of haloarchaeal strategies to withstand stress from transition metals. Genome Res 2006, 16:841-854. 10.1101/gr.5189606, 1484451, 16751342.
-
(2006)
Genome Res
, vol.16
, pp. 841-854
-
-
Kaur, A.1
Pan, M.2
Meislin, M.3
Facciotti, M.T.4
El-Gewely, R.5
Baliga, N.S.6
-
12
-
-
14244250412
-
Genomic analysis of anaerobic respiration in the archaeon Halobacterium sp. strain NRC-1: dimethyl sulfoxide and trimethylamine N-oxide as terminal electron acceptors
-
10.1128/JB.187.5.1659-1667.2005, 1064022, 15716436
-
Müller JA, DasSarma S. Genomic analysis of anaerobic respiration in the archaeon Halobacterium sp. strain NRC-1: dimethyl sulfoxide and trimethylamine N-oxide as terminal electron acceptors. J Bacteriol 2005, 187:1659-1667. 10.1128/JB.187.5.1659-1667.2005, 1064022, 15716436.
-
(2005)
J Bacteriol
, vol.187
, pp. 1659-1667
-
-
Müller, J.A.1
DasSarma, S.2
-
13
-
-
34948909792
-
The anatomy of microbial cell state transitions in response to oxygen
-
10.1101/gr.6728007, 1987344, 17785531
-
Schmid AK, Reiss DJ, Kaur A, Pan M, King N, Van PT, Hohmann L, Martin DB, Baliga NS. The anatomy of microbial cell state transitions in response to oxygen. Genome Res 2007, 17:1399-1413. 10.1101/gr.6728007, 1987344, 17785531.
-
(2007)
Genome Res
, vol.17
, pp. 1399-1413
-
-
Schmid, A.K.1
Reiss, D.J.2
Kaur, A.3
Pan, M.4
King, N.5
Van, P.T.6
Hohmann, L.7
Martin, D.B.8
Baliga, N.S.9
-
14
-
-
38449113963
-
Microarray Analysis in the Archaeon Halobacterium salinarum Strain R1
-
10.1371/journal.pone.0001064, 2020435, 17957248
-
Twellmeyer J, Wende A, Wolfertz J, Pfeiffer F, Panhuysen M, Zaigler A, Soppa J, Welzl G, Oesterhelt D. Microarray Analysis in the Archaeon Halobacterium salinarum Strain R1. PLoS One 2007, 2. 10.1371/journal.pone.0001064, 2020435, 17957248.
-
(2007)
PLoS One
, vol.2
-
-
Twellmeyer, J.1
Wende, A.2
Wolfertz, J.3
Pfeiffer, F.4
Panhuysen, M.5
Zaigler, A.6
Soppa, J.7
Welzl, G.8
Oesterhelt, D.9
-
15
-
-
33846071911
-
An integrated systems approach for understanding cellular responses to gamma radiation
-
10.1038/msb4100091, 1681521, 16969339
-
Whitehead K, Kish A, Pan M, Kaur A, Reiss DJ, King N, Hohmann L, DiRuggiero J, Baliga NS. An integrated systems approach for understanding cellular responses to gamma radiation. Mol Syst Biol 2006, 2:47. 10.1038/msb4100091, 1681521, 16969339.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 47
-
-
Whitehead, K.1
Kish, A.2
Pan, M.3
Kaur, A.4
Reiss, D.J.5
King, N.6
Hohmann, L.7
DiRuggiero, J.8
Baliga, N.S.9
-
16
-
-
34248399625
-
General transcription factor specified global gene regulation in archaea
-
10.1073/pnas.0611663104, 1838652, 17360575
-
Facciotti MT, Reiss DJ, Pan M, Kaur A, Vuthoori M, Bonneau R, Shannon P, Srivastava A, Donohoe SM, Hood LE, Baliga NS. General transcription factor specified global gene regulation in archaea. Proc Natl Acad Sci USA 2007, 104:4630-4635. 10.1073/pnas.0611663104, 1838652, 17360575.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 4630-4635
-
-
Facciotti, M.T.1
Reiss, D.J.2
Pan, M.3
Kaur, A.4
Vuthoori, M.5
Bonneau, R.6
Shannon, P.7
Srivastava, A.8
Donohoe, S.M.9
Hood, L.E.10
Baliga, N.S.11
-
17
-
-
55249119791
-
Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage
-
10.1021/pr800031f, 2643335, 18652504
-
Van PT, Schmid AK, King NL, Kaur A, Pan M, Whitehead K, Koide T, Facciotti MT, Goo YA, Deutsch EW, Reiss DJ, Mallick P, Baliga NS. Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage. J Proteome Res 2008, 7:3755-3764. 10.1021/pr800031f, 2643335, 18652504.
-
(2008)
J Proteome Res
, vol.7
, pp. 3755-3764
-
-
Van, P.T.1
Schmid, A.K.2
King, N.L.3
Kaur, A.4
Pan, M.5
Whitehead, K.6
Koide, T.7
Facciotti, M.T.8
Goo, Y.A.9
Deutsch, E.W.10
Reiss, D.J.11
Mallick, P.12
Baliga, N.S.13
-
18
-
-
67650815471
-
Prevalence of transcription promoters within archaeal operons and coding sequences
-
10.1038/msb.2009.42, 2710873, 19536208
-
Koide T, Reiss DJ, Bare JC, Pang WL, Facciotti MT, Schmid AK, Pan M, Marzolf B, Van PT, Lo FY, Pratap A, Deutsch EW, Peterson A, Martin D, Baliga NS. Prevalence of transcription promoters within archaeal operons and coding sequences. Mol Syst Biol 2009, 5:285. 10.1038/msb.2009.42, 2710873, 19536208.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 285
-
-
Koide, T.1
Reiss, D.J.2
Bare, J.C.3
Pang, W.L.4
Facciotti, M.T.5
Schmid, A.K.6
Pan, M.7
Marzolf, B.8
Van, P.T.9
Lo, F.Y.10
Pratap, A.11
Deutsch, E.W.12
Peterson, A.13
Martin, D.14
Baliga, N.S.15
-
19
-
-
38149126389
-
Genome-wide analysis of growth phase-dependent translational and transcriptional regulation in halophilic archaea
-
10.1186/1471-2164-8-415, 17997854
-
Lange C, Zaigler A, Hammelmann M, Twellmeyer J, Raddatz G, Schuster SC, Oesterhelt D, Soppa J. Genome-wide analysis of growth phase-dependent translational and transcriptional regulation in halophilic archaea. BMC Genomics 2007, 8:415. 10.1186/1471-2164-8-415, 17997854.
-
(2007)
BMC Genomics
, vol.8
, pp. 415
-
-
Lange, C.1
Zaigler, A.2
Hammelmann, M.3
Twellmeyer, J.4
Raddatz, G.5
Schuster, S.C.6
Oesterhelt, D.7
Soppa, J.8
-
20
-
-
59749096849
-
The haloarchaeal chromosome replication machinery
-
10.1042/BST0370108, 19143612
-
MacNeill SA. The haloarchaeal chromosome replication machinery. Biochem Soc Trans 2009, 37:108-113. 10.1042/BST0370108, 19143612.
-
(2009)
Biochem Soc Trans
, vol.37
, pp. 108-113
-
-
MacNeill, S.A.1
-
21
-
-
0037864281
-
Repair of UV damage in Halobacterium salinarum
-
10.1042/BST0310694, 12773185
-
McCready S, Marcello L. Repair of UV damage in Halobacterium salinarum . Biochem Soc Trans 2003, 31:694-698. 10.1042/BST0310694, 12773185.
-
(2003)
Biochem Soc Trans
, vol.31
, pp. 694-698
-
-
McCready, S.1
Marcello, L.2
-
22
-
-
77949346084
-
MutS and MutL Are Dispensable for Maintenance of the Genomic Mutation Rate in the Halophilic Archaeon Halobacterium salinarum NRC-1
-
10.1371/journal.pone.0009045, 2816208, 20140215
-
Busch CR, Diruggiero J. MutS and MutL Are Dispensable for Maintenance of the Genomic Mutation Rate in the Halophilic Archaeon Halobacterium salinarum NRC-1. PLoS One 2010, 5:e9045. 10.1371/journal.pone.0009045, 2816208, 20140215.
-
(2010)
PLoS One
, vol.5
-
-
Busch, C.R.1
Diruggiero, J.2
-
23
-
-
34250020327
-
The uvrA, uvrB and uvrC genes are required for repair of ultraviolet light induced DNA photoproducts in Halobacterium sp. NRC-1
-
10.1186/1746-1448-2-11, 1590041, 16970815
-
Crowley DJ, Boubriak I, Berquist BR, Clark M, Richard E, Sullivan L, DasSarma S, McCready S. The uvrA, uvrB and uvrC genes are required for repair of ultraviolet light induced DNA photoproducts in Halobacterium sp. NRC-1. Saline Systems 2006, 2:11. 10.1186/1746-1448-2-11, 1590041, 16970815.
-
(2006)
Saline Systems
, vol.2
, pp. 11
-
-
Crowley, D.J.1
Boubriak, I.2
Berquist, B.R.3
Clark, M.4
Richard, E.5
Sullivan, L.6
DasSarma, S.7
McCready, S.8
-
24
-
-
0015244581
-
Rhodopsin-like protein from the purple membrane of Halobacterium halobium
-
Oesterhelt D, Stoeckenius W. Rhodopsin-like protein from the purple membrane of Halobacterium halobium. Nat New Biol 1971, 233:149-152.
-
(1971)
Nat New Biol
, vol.233
, pp. 149-152
-
-
Oesterhelt, D.1
Stoeckenius, W.2
-
25
-
-
33748903643
-
Proton transfers in the bacteriorhodopsin photocycle
-
10.1016/j.bbabio.2005.11.003, 16376293
-
Lanyi JK. Proton transfers in the bacteriorhodopsin photocycle. Biochim Biophys Acta 2006, 1757:1012-1018. 10.1016/j.bbabio.2005.11.003, 16376293.
-
(2006)
Biochim Biophys Acta
, vol.1757
, pp. 1012-1018
-
-
Lanyi, J.K.1
-
26
-
-
33749580770
-
The multitalented microbial sensory rhodopsins
-
10.1016/j.tim.2006.09.005, 17005405
-
Spudich JL. The multitalented microbial sensory rhodopsins. Trends Microbiol 2006, 14:480-487. 10.1016/j.tim.2006.09.005, 17005405.
-
(2006)
Trends Microbiol
, vol.14
, pp. 480-487
-
-
Spudich, J.L.1
-
27
-
-
34447303049
-
Transcriptome changes and cAMP oscillations in an archaeal cell cycle
-
10.1186/1471-2121-8-21, 1906763, 17562013
-
Baumann A, Lange C, Soppa J. Transcriptome changes and cAMP oscillations in an archaeal cell cycle. BMC Cell Biol 2007, 8:21. 10.1186/1471-2121-8-21, 1906763, 17562013.
-
(2007)
BMC Cell Biol
, vol.8
, pp. 21
-
-
Baumann, A.1
Lange, C.2
Soppa, J.3
-
28
-
-
0025875784
-
Expression of the bop gene cluster of Halobacterium halobium is induced by low oxygen tension and by light
-
208146, 1856168
-
Shand RF, Betlach MC. Expression of the bop gene cluster of Halobacterium halobium is induced by low oxygen tension and by light. J Bacteriol 1991, 173:4692-4699. 208146, 1856168.
-
(1991)
J Bacteriol
, vol.173
, pp. 4692-4699
-
-
Shand, R.F.1
Betlach, M.C.2
-
29
-
-
0034921979
-
Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data
-
10.1089/10665270050514945, 11382363
-
Ideker T, Thorsson V, Siegel AF, Hood LE. Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data. J Comput Biol 2000, 7:805-817. 10.1089/10665270050514945, 11382363.
-
(2000)
J Comput Biol
, vol.7
, pp. 805-817
-
-
Ideker, T.1
Thorsson, V.2
Siegel, A.F.3
Hood, L.E.4
-
30
-
-
0033962956
-
Homologous gene knockout in the archaeon Halobacterium salinarum with ura3 as a counterselectable marker
-
10.1046/j.1365-2958.2000.01739.x, 10672188
-
Peck RF, DasSarma S, Krebs MP. Homologous gene knockout in the archaeon Halobacterium salinarum with ura3 as a counterselectable marker. Mol Microbiol 2000, 35:667-676. 10.1046/j.1365-2958.2000.01739.x, 10672188.
-
(2000)
Mol Microbiol
, vol.35
, pp. 667-676
-
-
Peck, R.F.1
DasSarma, S.2
Krebs, M.P.3
-
31
-
-
33747894577
-
TM4 microarray software suite
-
10.1016/S0076-6879(06)11009-5, 16939790
-
Saeed AI, Bhagabati NK, Braisted JC, Liang W, Sharov V, Howe EA, Li J, Thiagarajan M, White JA, Quackenbush J. TM4 microarray software suite. Methods Enzymol 2006, 411:134-193. 10.1016/S0076-6879(06)11009-5, 16939790.
-
(2006)
Methods Enzymol
, vol.411
, pp. 134-193
-
-
Saeed, A.I.1
Bhagabati, N.K.2
Braisted, J.C.3
Liang, W.4
Sharov, V.5
Howe, E.A.6
Li, J.7
Thiagarajan, M.8
White, J.A.9
Quackenbush, J.10
-
32
-
-
38349178598
-
Reconstruction, modeling & analysis of Halobacterium salinarum R-1 metabolism
-
10.1039/b715203e, 18213408
-
Gonzalez O, Gronau S, Falb M, Pfeiffer F, Mendoza E, Zimmer R, Oesterhelt D. Reconstruction, modeling & analysis of Halobacterium salinarum R-1 metabolism. Mol Biosyst 2008, 4:148-159. 10.1039/b715203e, 18213408.
-
(2008)
Mol Biosyst
, vol.4
, pp. 148-159
-
-
Gonzalez, O.1
Gronau, S.2
Falb, M.3
Pfeiffer, F.4
Mendoza, E.5
Zimmer, R.6
Oesterhelt, D.7
-
33
-
-
0031046679
-
Subunit change in cytochrome c oxidase: identification of the oxygen switch in Dictyostelium
-
10.1093/emboj/16.4.739, 1169675, 9049303
-
Bisson R, Vettore S, Aratri E, Sandona D. Subunit change in cytochrome c oxidase: identification of the oxygen switch in Dictyostelium. EMBO J 1997, 16:739-749. 10.1093/emboj/16.4.739, 1169675, 9049303.
-
(1997)
EMBO J
, vol.16
, pp. 739-749
-
-
Bisson, R.1
Vettore, S.2
Aratri, E.3
Sandona, D.4
-
34
-
-
33747813561
-
The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo
-
10.1186/gb-2006-7-5-r36, 1779511, 16686963
-
Bonneau R, Reiss DJ, Shannon P, Facciotti M, Hood L, Baliga NS, Thorsson V. The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo . Genome Biol 2006, 7:R36. 10.1186/gb-2006-7-5-r36, 1779511, 16686963.
-
(2006)
Genome Biol
, vol.7
-
-
Bonneau, R.1
Reiss, D.J.2
Shannon, P.3
Facciotti, M.4
Hood, L.5
Baliga, N.S.6
Thorsson, V.7
-
35
-
-
49749094012
-
Variations in the multiple tbp genes in different Halobacterium salinarum strains and their expression during growth
-
10.1007/s00203-008-0383-5, 18506423
-
Teufel K, Bleiholder A, Griesbach T, Pfeifer F. Variations in the multiple tbp genes in different Halobacterium salinarum strains and their expression during growth. Arch Microbiol 2008, 190:309-318. 10.1007/s00203-008-0383-5, 18506423.
-
(2008)
Arch Microbiol
, vol.190
, pp. 309-318
-
-
Teufel, K.1
Bleiholder, A.2
Griesbach, T.3
Pfeifer, F.4
-
36
-
-
17044371911
-
The discovery of four distinct glutamate dehydrogenase genes in a strain of Halobacterium salinarum
-
10.1016/j.gene.2005.01.011, 15780999
-
Ingoldsby LM, Geoghegan KF, Hayden BM, Engel PC. The discovery of four distinct glutamate dehydrogenase genes in a strain of Halobacterium salinarum . Gene 2005, 349:237-244. 10.1016/j.gene.2005.01.011, 15780999.
-
(2005)
Gene
, vol.349
, pp. 237-244
-
-
Ingoldsby, L.M.1
Geoghegan, K.F.2
Hayden, B.M.3
Engel, P.C.4
-
37
-
-
0026046173
-
The partial amino acid sequence of the NAD -dependent glutamate dehydrogenase of Clostridium symbiosum: implications for the evolution and structural basis of coenzyme specificity
-
Lilley KS, Baker PJ, Linda Britton K, Stillman TJ, Brown PE, Moir AJG, Engel PC, Rice DW, Ellis Bell J, Bell E. The partial amino acid sequence of the NAD -dependent glutamate dehydrogenase of Clostridium symbiosum: implications for the evolution and structural basis of coenzyme specificity. Biochimica et Biophysica Acta (BBA)-Protein Structure and Molecular Enzymology 1991, 1080:191-197.
-
(1991)
Biochimica et Biophysica Acta (BBA)-Protein Structure and Molecular Enzymology
, vol.1080
, pp. 191-197
-
-
Lilley, K.S.1
Baker, P.J.2
Linda Britton, K.3
Stillman, T.J.4
Brown, P.E.5
Moir, A.J.G.6
Engel, P.C.7
Rice, D.W.8
Ellis Bell, J.9
Bell, E.10
-
38
-
-
0015910159
-
Regulation of the nicotinamide adenine dinucleotide- and nicotinamide adenine dinucleotide phosphate-dependent glutamate dehydrogenases of Saccharomyces cerevisiae
-
246431, 4147647
-
Roon RJ, Even HL. Regulation of the nicotinamide adenine dinucleotide- and nicotinamide adenine dinucleotide phosphate-dependent glutamate dehydrogenases of Saccharomyces cerevisiae . J Bacteriol 1973, 116:367-372. 246431, 4147647.
-
(1973)
J Bacteriol
, vol.116
, pp. 367-372
-
-
Roon, R.J.1
Even, H.L.2
-
39
-
-
37049013315
-
Genetic and transcriptomic analysis of transcription factor genes in the model halophilic Archaeon: coordinate action of TbpD and TfbA
-
10.1186/1471-2156-8-61, 2121645, 17892563
-
Coker JA, DasSarma S. Genetic and transcriptomic analysis of transcription factor genes in the model halophilic Archaeon: coordinate action of TbpD and TfbA. BMC Genet 2007, 8:61. 10.1186/1471-2156-8-61, 2121645, 17892563.
-
(2007)
BMC Genet
, vol.8
, pp. 61
-
-
Coker, J.A.1
DasSarma, S.2
-
40
-
-
0027274755
-
Effect of glutathione on aconitase in Escherichia coli
-
10.1006/abbi.1993.1120, 8382910
-
Gardner PR, Fridovich I. Effect of glutathione on aconitase in Escherichia coli . Arch Biochem Biophys 1993, 301:98-102. 10.1006/abbi.1993.1120, 8382910.
-
(1993)
Arch Biochem Biophys
, vol.301
, pp. 98-102
-
-
Gardner, P.R.1
Fridovich, I.2
-
41
-
-
0030748655
-
Construction and properties of aconitase mutants of Escherichia coli
-
10.1099/00221287-143-6-1837, 9202458
-
Gruer MJ, Bradbury AJ, Guest JR. Construction and properties of aconitase mutants of Escherichia coli. Microbiology 1997, 143(Pt 6):1837-1846. 10.1099/00221287-143-6-1837, 9202458.
-
(1997)
Microbiology
, vol.143
, Issue.PART 6
, pp. 1837-1846
-
-
Gruer, M.J.1
Bradbury, A.J.2
Guest, J.R.3
-
42
-
-
72449149315
-
Deletion of citrate synthase restores growth of Sinorhizobium meliloti 1021 aconitase mutants
-
10.1128/JB.00777-09, 19820082, 2786589
-
Koziol U, Hannibal L, Rodríguez MC, Fabiano E, Kahn ML, Noya F. Deletion of citrate synthase restores growth of Sinorhizobium meliloti 1021 aconitase mutants. J Bacteriol 2009, 191:7581-7586. 10.1128/JB.00777-09, 19820082, 2786589.
-
(2009)
J Bacteriol
, vol.191
, pp. 7581-7586
-
-
Koziol, U.1
Hannibal, L.2
Rodríguez, M.C.3
Fabiano, E.4
Kahn, M.L.5
Noya, F.6
-
43
-
-
43949119420
-
Suppression of metabolic defects of yeast isocitrate dehydrogenase and aconitase mutants by loss of citrate synthase
-
10.1016/j.abb.2008.03.005, 2459229, 18359281
-
Lin AP, Hakala KW, Weintraub ST, McAlister-Henn L. Suppression of metabolic defects of yeast isocitrate dehydrogenase and aconitase mutants by loss of citrate synthase. Arch Biochem Biophys 2008, 474:205-212. 10.1016/j.abb.2008.03.005, 2459229, 18359281.
-
(2008)
Arch Biochem Biophys
, vol.474
, pp. 205-212
-
-
Lin, A.P.1
Hakala, K.W.2
Weintraub, S.T.3
McAlister-Henn, L.4
-
44
-
-
0035030167
-
Roles of aconitase in growth, metabolism, and morphological differentiation of Streptomyces coelicolor
-
10.1128/JB.183.10.3193-3203.2001, 95221, 11325949
-
Viollier PH, Nguyen KT, Minas W, Folcher M, Dale GE, Thompson CJ. Roles of aconitase in growth, metabolism, and morphological differentiation of Streptomyces coelicolor. J Bacteriol 2001, 183:3193-3203. 10.1128/JB.183.10.3193-3203.2001, 95221, 11325949.
-
(2001)
J Bacteriol
, vol.183
, pp. 3193-3203
-
-
Viollier, P.H.1
Nguyen, K.T.2
Minas, W.3
Folcher, M.4
Dale, G.E.5
Thompson, C.J.6
-
45
-
-
0032741992
-
Inactivation of the tricarboxylic acid cycle aconitase gene from Streptomyces viridochromogenes Tü494 impairs morphological and physiological differentiation
-
94190, 10559181
-
Schwartz D, Kaspar S, Kienzlen G, Muschko K, Wohlleben W. Inactivation of the tricarboxylic acid cycle aconitase gene from Streptomyces viridochromogenes Tü494 impairs morphological and physiological differentiation. J Bacteriol 1999, 181:7131-7135. 94190, 10559181.
-
(1999)
J Bacteriol
, vol.181
, pp. 7131-7135
-
-
Schwartz, D.1
Kaspar, S.2
Kienzlen, G.3
Muschko, K.4
Wohlleben, W.5
-
46
-
-
0030726675
-
A null mutation in the Bacillus subtilis aconitase gene causes a block in Spo0A-phosphate-dependent gene expression
-
179685, 9393699
-
Craig JE, Ford MJ, Blaydon DC, Sonenshein AL. A null mutation in the Bacillus subtilis aconitase gene causes a block in Spo0A-phosphate-dependent gene expression. J Bacteriol 1997, 179:7351-7359. 179685, 9393699.
-
(1997)
J Bacteriol
, vol.179
, pp. 7351-7359
-
-
Craig, J.E.1
Ford, M.J.2
Blaydon, D.C.3
Sonenshein, A.L.4
-
47
-
-
0036840950
-
Staphylococcus aureus aconitase inactivation unexpectedly inhibits post-exponential-phase growth and enhances stationary-phase survival
-
10.1128/IAI.70.11.6373-6382.2002, 130419, 12379717
-
Somerville GA, Chaussee MS, Morgan CI, Fitzgerald JR, Dorward DW, Reitzer LJ, Musser JM. Staphylococcus aureus aconitase inactivation unexpectedly inhibits post-exponential-phase growth and enhances stationary-phase survival. Infect Immun 2002, 70:6373-6382. 10.1128/IAI.70.11.6373-6382.2002, 130419, 12379717.
-
(2002)
Infect Immun
, vol.70
, pp. 6373-6382
-
-
Somerville, G.A.1
Chaussee, M.S.2
Morgan, C.I.3
Fitzgerald, J.R.4
Dorward, D.W.5
Reitzer, L.J.6
Musser, J.M.7
-
48
-
-
0033664358
-
RNA expression analysis using a 30 base pair resolution Escherichia coli genome array
-
10.1038/82367, 11101804
-
Selinger DW, Cheung KJ, Mei R, Johansson EM, Richmond CS, Blattner FR, Lockhart DJ, Church GM. RNA expression analysis using a 30 base pair resolution Escherichia coli genome array. Nat Biotechnol 2000, 18:1262-1268. 10.1038/82367, 11101804.
-
(2000)
Nat Biotechnol
, vol.18
, pp. 1262-1268
-
-
Selinger, D.W.1
Cheung, K.J.2
Mei, R.3
Johansson, E.M.4
Richmond, C.S.5
Blattner, F.R.6
Lockhart, D.J.7
Church, G.M.8
-
49
-
-
68849088492
-
Quantitative proteomics of nutrient limitation in the hydrogenotrophic methanogen Methanococcus maripaludis
-
10.1186/1471-2180-9-149, 2723118, 19627604
-
Xia Q, Wang T, Hendrickson EL, Lie TJ, Hackett M, Leigh JA. Quantitative proteomics of nutrient limitation in the hydrogenotrophic methanogen Methanococcus maripaludis . BMC Microbiol 2009, 9:149. 10.1186/1471-2180-9-149, 2723118, 19627604.
-
(2009)
BMC Microbiol
, vol.9
, pp. 149
-
-
Xia, Q.1
Wang, T.2
Hendrickson, E.L.3
Lie, T.J.4
Hackett, M.5
Leigh, J.A.6
-
50
-
-
40449095396
-
Global responses of Methanococcus maripaludis to specific nutrient limitations and growth rate
-
10.1128/JB.01805-07, 2258866, 18203827
-
Hendrickson EL, Liu Y, Rosas-Sandoval G, Porat I, Söll D, Whitman WB, Leigh JA. Global responses of Methanococcus maripaludis to specific nutrient limitations and growth rate. J Bacteriol 2008, 190:2198-2205. 10.1128/JB.01805-07, 2258866, 18203827.
-
(2008)
J Bacteriol
, vol.190
, pp. 2198-2205
-
-
Hendrickson, E.L.1
Liu, Y.2
Rosas-Sandoval, G.3
Porat, I.4
Söll, D.5
Whitman, W.B.6
Leigh, J.A.7
-
51
-
-
34547405862
-
Functionally distinct genes regulated by hydrogen limitation and growth rate in methanogenic Archaea
-
10.1073/pnas.0701157104, 1885605, 17502615
-
Hendrickson EL, Haydock AK, Moore BC, Whitman WB, Leigh JA. Functionally distinct genes regulated by hydrogen limitation and growth rate in methanogenic Archaea. Proc Natl Acad Sci USA 2007, 104:8930-8934. 10.1073/pnas.0701157104, 1885605, 17502615.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 8930-8934
-
-
Hendrickson, E.L.1
Haydock, A.K.2
Moore, B.C.3
Whitman, W.B.4
Leigh, J.A.5
-
52
-
-
65549152849
-
Diurnally entrained anticipatory behavior in archaea
-
10.1371/journal.pone.0005485, 2675056, 19424498
-
Whitehead K, Pan M, Masumura K, Bonneau R, Baliga NS. Diurnally entrained anticipatory behavior in archaea. PLoS One 2009, 4:e5485. 10.1371/journal.pone.0005485, 2675056, 19424498.
-
(2009)
PLoS One
, vol.4
-
-
Whitehead, K.1
Pan, M.2
Masumura, K.3
Bonneau, R.4
Baliga, N.S.5
-
53
-
-
12944270421
-
Genome sequence of Halobacterium species NRC-1
-
10.1073/pnas.190337797, 17314, 11016950
-
Ng WV, Kennedy SP, Mahairas GG, Berquist B, Pan M, Shukla HD, Lasky SR, Baliga NS, Thorsson V, Sbrogna J, Swartzell S, Weir D, Hall J, Dahl TA, Welti R, Goo YA, Leithauser B, Keller K, Cruz R, Danson MJ, Hough DW, Maddocks DG, Jablonski PE, Krebs MP, Angevine CM, Dale H, Isenbarger TA, Peck RF, Pohlschroder M, Spudich JL, Jung KW, Alam M, Freitas T, Hou S, Daniels CJ, Dennis PP, Omer AD, Ebhardt H, Lowe TM, Liang P, Riley M, Hood L, DasSarma S. Genome sequence of Halobacterium species NRC-1. Proc Natl Acad Sci USA 2000, 97:12176-12181. 10.1073/pnas.190337797, 17314, 11016950.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 12176-12181
-
-
Ng, W.V.1
Kennedy, S.P.2
Mahairas, G.G.3
Berquist, B.4
Pan, M.5
Shukla, H.D.6
Lasky, S.R.7
Baliga, N.S.8
Thorsson, V.9
Sbrogna, J.10
Swartzell, S.11
Weir, D.12
Hall, J.13
Dahl, T.A.14
Welti, R.15
Goo, Y.A.16
Leithauser, B.17
Keller, K.18
Cruz, R.19
Danson, M.J.20
Hough, D.W.21
Maddocks, D.G.22
Jablonski, P.E.23
Krebs, M.P.24
Angevine, C.M.25
Dale, H.26
Isenbarger, T.A.27
Peck, R.F.28
Pohlschroder, M.29
Spudich, J.L.30
Jung, K.W.31
Alam, M.32
Freitas, T.33
Hou, S.34
Daniels, C.J.35
Dennis, P.P.36
Omer, A.D.37
Ebhardt, H.38
Lowe, T.M.39
Liang, P.40
Riley, M.41
Hood, L.42
DasSarma, S.43
more..
-
54
-
-
0037069421
-
Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach
-
10.1073/pnas.192558999, 137519, 12403819
-
Baliga NS, Pan M, Goo YA, Yi EC, Goodlett DR, Dimitrov K, Shannon P, Aebersold R, Ng WV, Hood L. Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach. Proc Natl Acad Sci USA 2002, 99:14913-14918. 10.1073/pnas.192558999, 137519, 12403819.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 14913-14918
-
-
Baliga, N.S.1
Pan, M.2
Goo, Y.A.3
Yi, E.C.4
Goodlett, D.R.5
Dimitrov, K.6
Shannon, P.7
Aebersold, R.8
Ng, W.V.9
Hood, L.10
-
55
-
-
33646743767
-
The Gaggle: an open-source software system for integrating bioinformatics software and data sources
-
10.1186/1471-2105-7-176, 1464137, 16569235
-
Shannon PT, Reiss DJ, Bonneau R, Baliga NS. The Gaggle: an open-source software system for integrating bioinformatics software and data sources. BMC Bioinformatics 2006, 7:176. 10.1186/1471-2105-7-176, 1464137, 16569235.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 176
-
-
Shannon, P.T.1
Reiss, D.J.2
Bonneau, R.3
Baliga, N.S.4
-
56
-
-
32444446805
-
XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
-
10.1021/ac051437y, 16448051
-
Smith CA, Want EJ, O'Maille G, Abagyan R, Siuzdak G. XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Anal Chem 2006, 78:779-787. 10.1021/ac051437y, 16448051.
-
(2006)
Anal Chem
, vol.78
, pp. 779-787
-
-
Smith, C.A.1
Want, E.J.2
O'Maille, G.3
Abagyan, R.4
Siuzdak, G.5
|