-
1
-
-
10944232800
-
Post-transcriptional expression regulation in the yeast Saccharomyces cerevisiae on a genomic scale
-
10.1074/mcp.M400099-MCP200 15326222
-
Beyer A Hollunder J Nasheuer HP Wilhelm T Post-transcriptional expression regulation in the yeast Saccharomyces cerevisiae on a genomic scale Mol Cell Proteomics 2004, 3(11):1083-1092. 10.1074/ mcp.M400099-MCP200 15326222
-
(2004)
Mol Cell Proteomics
, vol.3
, Issue.11
, pp. 1083-1092
-
-
Beyer, A.1
Hollunder, J.2
Nasheuer, H.P.3
Wilhelm, T.4
-
2
-
-
2642566765
-
Gene expression analyzed by high-resolution state array analysis and quantitative proteomics: Response of yeast to mating pheromone
-
10.1074/mcp.M300129-MCP200 14766929
-
MacKay VL Li X Flory MR Turcott E Law GL Serikawa KA Xu XL Lee H Goodlett DR Aebersold R Zhao LP Morris DR Gene expression analyzed by high-resolution state array analysis and quantitative proteomics: response of yeast to mating pheromone Mol Cell Proteomics 2004, 3(5):478-489. 10.1074/mcp.M300129-MCP200 14766929
-
(2004)
Mol Cell Proteomics
, vol.3
, Issue.8
, pp. 478-489
-
-
MacKay, V.L.1
Li, X.2
Flory, M.R.3
Turcott, E.4
Law, G.L.5
Serikawa, K.A.6
Xu, X.L.7
Lee, H.8
Goodlett, D.R.9
Aebersold, R.10
Zhao, L.P.11
Morris, D.R.12
-
3
-
-
23944483135
-
Post-transcriptional control of gene expression: A genome-wide perspective
-
10.1016/j.tibs.2005.07.005 16054366
-
Mata J Marguerat S Bahler J Post-transcriptional control of gene expression: A genome-wide perspective Trends Biochem Sci 2005, 30(9):506-514. 10.1016/j.tibs.2005.07.005 16054366
-
(2005)
Trends Biochem Sci
, vol.30
, Issue.9
, pp. 506-514
-
-
Mata, J.1
Marguerat, S.2
Bahler, J.3
-
4
-
-
34548437657
-
Inferring rules of Escherichia coli translational efficiency using an artificial neural network
-
10.1016/j.biosystems.2006.10.005 17150301
-
Mori K Saito R Kikuchi S Tomita M Inferring rules of Escherichia coli translational efficiency using an artificial neural network Biosystems 2007, 90(2):414-420. 10.1016/j.biosystems.2006.10.005 17150301
-
(2007)
Biosystems
, vol.90
, Issue.2
, pp. 414-420
-
-
Mori, K.1
Saito, R.2
Kikuchi, S.3
Tomita, M.4
-
5
-
-
0028303468
-
Quantitative analysis of ribosome binding sites in E.coli
-
523655 8165145 10.1093/nar/22.7.1287
-
Barrick D Villanueba K Childs J Kalil R Schneider TD Lawrence CE Gold L Stormo GD Quantitative analysis of ribosome binding sites in E.coli Nucleic Acids Res 1994, 22(7):1287-1295. 523655 8165145 10.1093/nar/ 22.7.1287
-
(1994)
Nucleic Acids Res
, vol.22
, Issue.7
, pp. 1287-1295
-
-
Barrick, D.1
Villanueba, K.2
Childs, J.3
Kalil, R.4
Schneider, T.D.5
Lawrence, C.E.6
Gold, L.7
Stormo, G.D.8
-
6
-
-
0344329881
-
Dual channel imaging of two-dimensional electropherograms in Bacillus subtilis
-
10.1002/(SICI)1522-2683(19990801)20:11<2225::AID- ELPS2225>3.0.CO;2-8 10493127
-
Bernhardt J Buttner K Scharf C Hecker M Dual channel imaging of two-dimensional electropherograms in Bacillus subtilis Electrophoresis 1999, 20(11):2225-2240. 10.1002/(SICI)1522-2683(19990801) 20:11<2225::AID-ELPS2225>3.0.CO;2-8 10493127
-
(1999)
Electrophoresis
, vol.20
, Issue.11
, pp. 2225-2240
-
-
Bernhardt, J.1
Buttner, K.2
Scharf, C.3
Hecker, M.4
-
7
-
-
0035836761
-
Proteomic analysis of the bacterial cell cycle
-
31894 11287652 10.1073/pnas.071538098
-
Grünenfelder B Rummel G Vohradsky J Roder D Langen H Jenal U Proteomic analysis of the bacterial cell cycle Proc Natl Acad Sci U S A 2001, 98(8):4681-4686. 31894 11287652 10.1073/pnas.071538098
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, Issue.8
, pp. 4681-4686
-
-
Grünenfelder, B.1
Rummel, G.2
Vohradsky, J.3
Roder, D.4
Langen, H.5
Jenal, U.6
-
8
-
-
4644299555
-
Translational profiling: The genome-wide measure of the nascent proteome
-
10.1093/bfgp/3.2.103 15355593
-
Beilharz TH Preiss T Translational profiling: The genome-wide measure of the nascent proteome Brief Funct Genomic Proteomic 2004, 3(2):103-111. 10.1093/bfgp/3.2.103 15355593
-
(2004)
Brief Funct Genomic Proteomic
, vol.3
, Issue.2
, pp. 103-111
-
-
Beilharz, T.H.1
Preiss, T.2
-
9
-
-
17844395239
-
Dissecting eukaryotic translation and its control by ribosome density mapping
-
1087779 15860778 10.1093/nar/gki331
-
Arava Y Boas FE Brown PO Herschlag D Dissecting eukaryotic translation and its control by ribosome density mapping Nucleic Acids Res 2005, 33(8):2421-2432. 1087779 15860778 10.1093/nar/gki331
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.8
, pp. 2421-2432
-
-
Arava, Y.1
Boas, F.E.2
Brown, P.O.3
Herschlag, D.4
-
10
-
-
0037388094
-
Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae
-
153018 12660367 10.1073/pnas.0635171100
-
Arava Y Wang Y Storey JD Liu CL Brown PO Herschlag D Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae Proc Natl Acad Sci U S A 2003, 100(7):3889-3894. 153018 12660367 10.1073/ pnas.0635171100
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, Issue.7
, pp. 3889-3894
-
-
Arava, Y.1
Wang, Y.2
Storey, J.D.3
Liu, C.L.4
Brown, P.O.5
Herschlag, D.6
-
11
-
-
0032845153
-
Messenger RNA translation state: The second dimension of high-throughput expression screening
-
17934 10485877 10.1073/pnas.96.19.10632
-
Zong Q Schummer M Hood L Morris DR Messenger RNA translation state: The second dimension of high-throughput expression screening Proc Natl Acad Sci U S A 1999, 96(19):10632-10636. 17934 10485877 10.1073/ pnas.96.19.10632
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, Issue.19
, pp. 10632-10636
-
-
Zong, Q.1
Schummer, M.2
Hood, L.3
Morris, D.R.4
-
12
-
-
0345602742
-
Homodirectional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock
-
10.1038/nsb1015 14608375
-
Preiss T Baron-Benhamou J Ansorge W Hentze MW Homodirectional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock Nat Struct Biol 2003, 10(12):1039-1047. 10.1038/nsb1015 14608375
-
(2003)
Nat Struct Biol
, vol.10
, Issue.12
, pp. 1039-1047
-
-
Preiss, T.1
Baron-Benhamou, J.2
Ansorge, W.3
Hentze, M.W.4
-
13
-
-
0141979318
-
The transcriptome and its translation during recovery from cell cycle arrest in Saccharomyces cerevisiae
-
10.1074/mcp.D200002-MCP200 12684541
-
Serikawa KA Xu XL MacKay VL Law GL Zong Q Zhao LP Bumgarner R Morris DR The transcriptome and its translation during recovery from cell cycle arrest in Saccharomyces cerevisiae Mol Cell Proteomics 2003, 2(3):191-204. 10.1074/mcp.D200002-MCP200 12684541
-
(2003)
Mol Cell Proteomics
, vol.2
, Issue.3
, pp. 191-204
-
-
Serikawa, K.A.1
Xu, X.L.2
MacKay, V.L.3
Law, G.L.4
Zong, Q.5
Zhao, L.P.6
Bumgarner, R.7
Morris, D.R.8
-
14
-
-
0035137667
-
Global and specific translational regulation in the genomic response of Saccharomyces cerevisiae to a rapid transfer from a fermentable to a nonfermentable carbon source
-
86682 11154278 10.1128/MCB.21.3.916-927.2001
-
Kuhn KM DeRisi JL Brown PO Sarnow P Global and specific translational regulation in the genomic response of Saccharomyces cerevisiae to a rapid transfer from a fermentable to a nonfermentable carbon source Mol Cell Biol 2001, 21(3):916-927. 86682 11154278 10.1128/ MCB.21.3.916-927.2001
-
(2001)
Mol Cell Biol
, vol.21
, Issue.3
, pp. 916-927
-
-
Kuhn, K.M.1
DeRisi, J.L.2
Brown, P.O.3
Sarnow, P.4
-
15
-
-
33749379882
-
Global translational responses to oxidative stress impact upon multiple levels of protein synthesis
-
10.1074/jbc.M601545200 16849329
-
Shenton D Smirnova JB Selley JN Carroll K Hubbard SJ Pavitt GD Ashe MP Grant CM Global translational responses to oxidative stress impact upon multiple levels of protein synthesis J Biol Chem 2006, 281(39):29011-29021. 10.1074/jbc.M601545200 16849329
-
(2006)
J Biol Chem
, vol.281
, Issue.39
, pp. 29011-29021
-
-
Shenton, D.1
Smirnova, J.B.2
Selley, J.N.3
Carroll, K.4
Hubbard, S.J.5
Pavitt, G.D.6
Ashe, M.P.7
Grant, C.M.8
-
16
-
-
27144465421
-
Global gene expression profiling reveals widespread yet distinctive translational responses to different eukaryotic translation initiation factor 2B-targeting stress pathways
-
1265828 16227585 10.1128/MCB.25.21.9340-9349.2005
-
Smirnova JB Selley JN Sanchez-Cabo F Carroll K Eddy AA McCarthy JE Hubbard SJ Pavitt GD Grant CM Ashe MP Global gene expression profiling reveals widespread yet distinctive translational responses to different eukaryotic translation initiation factor 2B-targeting stress pathways Mol Cell Biol 2005, 25(21):9340-9349. 1265828 16227585 10.1128/ MCB.25.21.9340-9349.2005
-
(2005)
Mol Cell Biol
, vol.25
, Issue.21
, pp. 9340-9349
-
-
Smirnova, J.B.1
Selley, J.N.2
Sanchez-Cabo, F.3
Carroll, K.4
Eddy, A.A.5
McCarthy, J.E.6
Hubbard, S.J.7
Pavitt, G.D.8
Grant, C.M.9
Ashe, M.P.10
-
17
-
-
24744454639
-
Genome-wide analysis of transcript abundance and translation in Arabidopsis seedlings subjected to oxygen deprivation
-
16081496
-
Branco-Price C Kawaguchi R Ferreira RB Bailey-Serres J Genome-wide analysis of transcript abundance and translation in Arabidopsis seedlings subjected to oxygen deprivation Ann Bot (Lond) 2005. 16081496
-
(2005)
Ann Bot (Lond)
-
-
Branco-Price, C.1
Kawaguchi, R.2
Ferreira, R.B.3
Bailey-Serres, J.4
-
18
-
-
13944270653
-
mRNA sequence features that contribute to translational regulation in Arabidopsis
-
549406 15716313 10.1093/nar/gki240
-
Kawaguchi R Bailey-Serres J mRNA sequence features that contribute to translational regulation in Arabidopsis Nucleic Acids Res 2005, 33(3):955-965. 549406 15716313 10.1093/nar/gki240
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.3
, pp. 955-965
-
-
Kawaguchi, R.1
Bailey-Serres, J.2
-
19
-
-
2542642407
-
Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana
-
10.1111/j.1365-313X.2004.02090.x 15144383
-
Kawaguchi R Girke T Bray EA Bailey-Serres J Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana Plant J 2004, 38(5):823-839. 10.1111/j.1365-313X.2004.02090.x 15144383
-
(2004)
Plant J
, vol.38
, Issue.5
, pp. 823-839
-
-
Kawaguchi, R.1
Girke, T.2
Bray, E.A.3
Bailey-Serres, J.4
-
20
-
-
33745663309
-
Large-scale analysis of mRNA translation states during sucrose starvation in Arabidopsis cells identifies cell proliferation and chromatin structure as targets of translational control
-
1475480 16632591 10.1104/pp.106.079418
-
Nicolai M Roncato MA Canoy AS Rouquie D Sarda X Freyssinet G Robaglia C Large-scale analysis of mRNA translation states during sucrose starvation in Arabidopsis cells identifies cell proliferation and chromatin structure as targets of translational control Plant Physiol 2006, 141(2):663-673. 1475480 16632591 10.1104/pp.106.079418
-
(2006)
Plant Physiol
, vol.141
, Issue.2
, pp. 663-673
-
-
Nicolai, M.1
Roncato, M.A.2
Canoy, A.S.3
Rouquie, D.4
Sarda, X.5
Freyssinet, G.6
Robaglia, C.7
-
21
-
-
0037151120
-
Global and specific translational control by rapamycin in T cells uncovered by microarrays and proteomics
-
10.1074/jbc.M202014200 11943782
-
Grolleau A Bowman J Pradet-Balade B Puravs E Hanash S Garcia-Sanz JA Beretta L Global and specific translational control by rapamycin in T cells uncovered by microarrays and proteomics J Biol Chem 2002, 277(25):22175-22184. 10.1074/jbc.M202014200 11943782
-
(2002)
J Biol Chem
, vol.277
, Issue.25
, pp. 22175-22184
-
-
Grolleau, A.1
Bowman, J.2
Pradet-Balade, B.3
Puravs, E.4
Hanash, S.5
Garcia-Sanz, J.A.6
Beretta, L.7
-
22
-
-
31544442938
-
Radiation-induced changes in gene expression involve recruitment of existing messenger RNAs to and away from polysomes
-
10.1158/0008-5472.CAN-05-3459 16424041
-
Lü X de la Pena L Barker C Camphausen K Tofilon PJ Radiation-induced changes in gene expression involve recruitment of existing messenger RNAs to and away from polysomes Cancer Res 2006, 66(2):1052-1061. 10.1158/0008-5472.CAN-05-3459 16424041
-
(2006)
Cancer Res
, vol.66
, Issue.2
, pp. 1052-1061
-
-
Lü, X.1
de la Pena, L.2
Barker, C.3
Camphausen, K.4
Tofilon, P.J.5
-
23
-
-
0033879560
-
Isolation of translationally controlled mRNAs by differential screening
-
10.1096/fj.14.11.1641 10928999
-
Mikulits W Pradet-Balade B Habermann B Beug H Garcia-Sanz JA Mullner EW Isolation of translationally controlled mRNAs by differential screening Faseb J 2000, 14(11):1641-1652. 10.1096/fj.14.11.1641 10928999
-
(2000)
Faseb J
, vol.14
, Issue.11
, pp. 1641-1652
-
-
Mikulits, W.1
Pradet-Balade, B.2
Habermann, B.3
Beug, H.4
Garcia-Sanz, J.A.5
Mullner, E.W.6
-
24
-
-
33745038219
-
The undertranslated transcriptome reveals widespread translational silencing by alternative 5′ transcript leaders
-
1414110 16420678 10.1186/gb-2005-6-13-r111
-
Law GL Bickel KS MacKay VL Morris DR The undertranslated transcriptome reveals widespread translational silencing by alternative 5' transcript leaders Genome Biol 2005, 6(13):R111. 1414110 16420678 10.1186/ gb-2005-6-13-r111
-
(2005)
Genome Biol
, vol.6
, Issue.13
-
-
Law, G.L.1
Bickel, K.S.2
MacKay, V.L.3
Morris, D.R.4
-
25
-
-
34547638620
-
CsrA inhibits translation initiation of Escherichia coli hfq by binding to a single site overlapping the Shine-Dalgarno sequence
-
10.1128/JB.00529-07 17526692
-
Baker CS Eory LA Yakhnin H Mercante J Romeo T Babitzke P CsrA inhibits translation initiation of Escherichia coli hfq by binding to a single site overlapping the Shine-Dalgarno sequence J Bacteriol 2007, 189(15):5472-5481. 10.1128/JB.00529-07 17526692
-
(2007)
J Bacteriol
, vol.189
, Issue.15
, pp. 5472-5481
-
-
Baker, C.S.1
Eory, L.A.2
Yakhnin, H.3
Mercante, J.4
Romeo, T.5
Babitzke, P.6
-
26
-
-
0037373552
-
Bacterial translational control at atomic resolution
-
10.1016/S0168-9525(03)00020-9 12615010
-
Romby P Springer M Bacterial translational control at atomic resolution Trends Genet 2003, 19(3):155-161. 10.1016/S0168-9525(03)00020-9 12615010
-
(2003)
Trends Genet
, vol.19
, Issue.3
, pp. 155-161
-
-
Romby, P.1
Springer, M.2
-
27
-
-
33746529256
-
Regulated translation of listeriolysin O controls virulence of Listeria monocytogenes
-
10.1111/j.1365-2958.2006.05286.x 16859495
-
Schnupf P Hofmann J Norseen J Glomski IJ Schwartzstein H Decatur AL Regulated translation of listeriolysin O controls virulence of Listeria monocytogenes Mol Microbiol 2006, 61(4):999-1012. 10.1111/ j.1365-2958.2006.05286.x 16859495
-
(2006)
Mol Microbiol
, vol.61
, Issue.4
, pp. 999-1012
-
-
Schnupf, P.1
Hofmann, J.2
Norseen, J.3
Glomski, I.J.4
Schwartzstein, H.5
Decatur, A.L.6
-
28
-
-
33847386673
-
Translational control and target recognition by Escherichia coli small RNAs in vivo
-
1807950 17264113 10.1093/nar/gkl1040
-
Urban JH Vogel J Translational control and target recognition by Escherichia coli small RNAs in vivo Nucleic Acids Res 2007, 35(3):1018-1037. 1807950 17264113 10.1093/nar/gkl1040
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.3
, pp. 1018-1037
-
-
Urban, J.H.1
Vogel, J.2
-
29
-
-
0036431724
-
Cell cycle-dependent expression of an essential SMC-like protein and dynamic chromosome localization in the archaeon Halobacterium salinarum
-
10.1046/j.1365-2958.2002.03181.x 12406217
-
Herrmann U Soppa J Cell cycle-dependent expression of an essential SMC-like protein and dynamic chromosome localization in the archaeon Halobacterium salinarum Mol Microbiol 2002, 46(2):395-409. 10.1046/ j.1365-2958.2002.03181.x 12406217
-
(2002)
Mol Microbiol
, vol.46
, Issue.2
, pp. 395-409
-
-
Herrmann, U.1
Soppa, J.2
-
30
-
-
33645103946
-
From genomes to function: Haloarchaea as model organisms
-
10.1099/mic.0.28504-0 16514139
-
Soppa J From genomes to function: Haloarchaea as model organisms Microbiology 2006, 152(Pt 3):585-590. 10.1099/mic.0.28504-0 16514139
-
(2006)
Microbiology
, vol.152
, Issue.PART 3
, pp. 585-590
-
-
Soppa, J.1
-
31
-
-
0027960812
-
Role of the AGA/AGG codons, the rarest codons in global gene expression in Escherichia coli
-
10.1101/gad.8.21.2641 7958922
-
Chen GT Inouye M Role of the AGA/AGG codons, the rarest codons in global gene expression in Escherichia coli Genes Dev 1994, 8(21):2641-2652. 10.1101/gad.8.21.2641 7958922
-
(1994)
Genes Dev
, vol.8
, Issue.21
, pp. 2641-2652
-
-
Chen, G.T.1
Inouye, M.2
-
32
-
-
0142215475
-
Global analysis of protein expression in yeast
-
10.1038/nature02046 14562106
-
Ghaemmaghami S Huh WK Bower K Howson RW Belle A Dephoure N O'Shea EK Weissman JS Global analysis of protein expression in yeast Nature 2003, 425(6959):737-741. 10.1038/nature02046 14562106
-
(2003)
Nature
, vol.425
, Issue.6959
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
Dephoure, N.6
O'Shea, E.K.7
Weissman, J.S.8
-
33
-
-
15944390620
-
Evolution of translational initiation: New insights from the archaea
-
10.1016/j.femsre.2004.10.002 15808741
-
Londei P Evolution of translational initiation: New insights from the archaea FEMS Microbiol Rev 2005, 29(2):185-200. 10.1016/ j.femsre.2004.10.002 15808741
-
(2005)
FEMS Microbiol Rev
, vol.29
, Issue.2
, pp. 185-200
-
-
Londei, P.1
-
34
-
-
0032572776
-
Eukaryotic ribosomes require initiation factors 1 and 1A to locate initiation codons
-
10.1038/29703 9732867
-
Pestova TV Borukhov SI Hellen CU Eukaryotic ribosomes require initiation factors 1 and 1A to locate initiation codons Nature 1998, 394(6696):854-859. 10.1038/29703 9732867
-
(1998)
Nature
, vol.394
, Issue.6696
, pp. 854-859
-
-
Pestova, T.V.1
Borukhov, S.I.2
Hellen, C.U.3
-
35
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
-
10.1006/meth.2001.1262 1184660
-
Livak KJ Schmittgen TD Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method Methods 2001, 25(4):402-408. 10.1006/meth.2001.1262 1184660
-
(2001)
Methods
, vol.25
, Issue.4
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
36
-
-
34250735674
-
RNA regulons: Coordination of post-transcriptional events
-
10.1038/nrg2111 17572691
-
Keene JD RNA regulons: Coordination of post-transcriptional events Nat Rev Genet 2007, 8(7):533-543. 10.1038/nrg2111 17572691
-
(2007)
Nat Rev Genet
, vol.8
, Issue.7
, pp. 533-543
-
-
Keene, J.D.1
-
37
-
-
23444446940
-
Post-transcriptional operons and regulons co-ordinating gene expression
-
10.1007/s10577-005-0848-1 15868425
-
Keene JD Lager PJ Post-transcriptional operons and regulons co-ordinating gene expression Chromosome Res 2005, 13(3):327-337. 10.1007/s10577-005-0848-1 15868425
-
(2005)
Chromosome Res
, vol.13
, Issue.3
, pp. 327-337
-
-
Keene, J.D.1
Lager, P.J.2
-
38
-
-
21644490138
-
Translational regulation via 5′ mRNA leader sequences revealed by mutational analysis of the Arabidopsis translation initiation factor subunit eIF3h
-
535877 15548739 10.1105/tpc.104.026880
-
Kim TH Kim BH Yahalom A Chamovitz DA von Arnim AG Translational regulation via 5′ mRNA leader sequences revealed by mutational analysis of the Arabidopsis translation initiation factor subunit eIF3h Plant Cell 2004, 16(12):3341-3356. 535877 15548739 10.1105/tpc.104.026880
-
(2004)
Plant Cell
, vol.16
, Issue.12
, pp. 3341-3356
-
-
Kim, T.H.1
Kim, B.H.2
Yahalom, A.3
Chamovitz, D.A.4
von Arnim, A.G.5
-
39
-
-
18844433039
-
Predicted highly expressed genes in archaeal genomes
-
1129124 15883368 10.1073/pnas.0502313102
-
Karlin S Mrazek J Ma J Brocchieri L Predicted highly expressed genes in archaeal genomes Proc Natl Acad Sci U S A 2005, 102(20):7303-7308. 1129124 15883368 10.1073/pnas.0502313102
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, Issue.20
, pp. 7303-7308
-
-
Karlin, S.1
Mrazek, J.2
Ma, J.3
Brocchieri, L.4
-
40
-
-
0033664358
-
RNA expression analysis using a 30 base pair resolution Escherichia coli genome array
-
10.1038/82367 11101804
-
Selinger DW Cheung KJ Mei R Johansson EM Richmond CS Blattner FR Lockhart DJ Church GM RNA expression analysis using a 30 base pair resolution Escherichia coli genome array Nat Biotechnol 2000, 18(12):1262-1268. 10.1038/82367 11101804
-
(2000)
Nat Biotechnol
, vol.18
, Issue.12
, pp. 1262-1268
-
-
Selinger, D.W.1
Cheung, K.J.2
Mei, R.3
Johansson, E.M.4
Richmond, C.S.5
Blattner, F.R.6
Lockhart, D.J.7
Church, G.M.8
-
41
-
-
0038693118
-
Construction and usage of a onefold-coverage shotgun DNA microarray to characterize the metabolism of the archaeon Haloferax volcanii
-
10.1046/j.1365-2958.2003.03497.x 12753198
-
Zaigler A Schuster SC Soppa J Construction and usage of a onefold-coverage shotgun DNA microarray to characterize the metabolism of the archaeon Haloferax volcanii Mol Microbiol 2003, 48(4):1089-1105. 10.1046/j.1365-2958.2003.03497.x 12753198
-
(2003)
Mol Microbiol
, vol.48
, Issue.4
, pp. 1089-1105
-
-
Zaigler, A.1
Schuster, S.C.2
Soppa, J.3
-
42
-
-
36148999809
-
Characterization of a tightly controlled promoter of the halophilic archaeon Haloferax volcanii and its use in the analysis of the essential cct1 gene
-
10.1111/j.1365-2958.2007.05980.x 17973910
-
Large A Stamme C Lange C Duan Z Allers T Soppa J Lund PA Characterization of a tightly controlled promoter of the halophilic archaeon Haloferax volcanii and its use in the analysis of the essential cct1 gene Mol Microbiol 2007, 66(5):1092-1106. 10.1111/ j.1365-2958.2007.05980.x 17973910
-
(2007)
Mol Microbiol
, vol.66
, Issue.5
, pp. 1092-1106
-
-
Large, A.1
Stamme, C.2
Lange, C.3
Duan, Z.4
Allers, T.5
Soppa, J.6
Lund, P.A.7
-
43
-
-
0037154965
-
Gene-specific regulation by general translation factors
-
10.1016/S0092-8674(02)00642-6 11909525
-
Dever TE Gene-specific regulation by general translation factors Cell 2002, 108(4):545-556. 10.1016/S0092-8674(02)00642-6 11909525
-
(2002)
Cell
, vol.108
, Issue.4
, pp. 545-556
-
-
Dever, T.E.1
-
44
-
-
0036909438
-
Protein-protein interactions required during translation
-
10.1023/A:1021220910664 12516864
-
Gallie DR Protein-protein interactions required during translation Plant Mol Biol 2002, 50(6):949-970. 10.1023/A:1021220910664 12516864
-
(2002)
Plant Mol Biol
, vol.50
, Issue.6
, pp. 949-970
-
-
Gallie, D.R.1
-
45
-
-
12344290346
-
Mechanisms of translational control by the 3′ UTR in development and differentiation
-
10.1016/j.semcdb.2004.11.007 15659339
-
de Moor CH Meijer H Lissenden S Mechanisms of translational control by the 3′ UTR in development and differentiation Semin Cell Dev Biol 2005, 16(1):49-58. 10.1016/j.semcdb.2004.11.007 15659339
-
(2005)
Semin Cell Dev Biol
, vol.16
, Issue.1
, pp. 49-58
-
-
de Moor, C.H.1
Meijer, H.2
Lissenden, S.3
-
46
-
-
5044229348
-
Molecular mechanisms of translational control
-
10.1038/nrm1488 15459663
-
Gebauer F Hentze MW Molecular mechanisms of translational control Nat Rev Mol Cell Biol 2004, 5(10):827-835. 10.1038/nrm1488 15459663
-
(2004)
Nat Rev Mol Cell Biol
, vol.5
, Issue.10
, pp. 827-835
-
-
Gebauer, F.1
Hentze, M.W.2
-
47
-
-
0242669945
-
Regulation of mRNA translation by 5′- and 3′-UTR-binding factors
-
10.1016/S0968-0004(03)00051-3 12713901
-
Wilkie GS Dickson KS Gray NK Regulation of mRNA translation by 5'- and 3'-UTR-binding factors Trends Biochem Sci 2003, 28(4):182-188. 10.1016/ S0968-0004(03)00051-3 12713901
-
(2003)
Trends Biochem Sci
, vol.28
, Issue.4
, pp. 182-188
-
-
Wilkie, G.S.1
Dickson, K.S.2
Gray, N.K.3
-
49
-
-
27844495652
-
Small non-coding RNAs in Archaea
-
16256421
-
Dennis PP Omer A Small non-coding RNAs in Archaea Curr Opin Microbiol 2005, 8(6):685-694. 16256421
-
(2005)
Curr Opin Microbiol
, vol.8
, Issue.6
, pp. 685-694
-
-
Dennis, P.P.1
Omer, A.2
-
50
-
-
0142093592
-
Two different mechanisms for ribosome/mRNA interaction in archaeal translation initiation
-
10.1046/j.1365-2958.2003.03721.x 14617185
-
Benelli D Maone E Londei P Two different mechanisms for ribosome/mRNA interaction in archaeal translation initiation Mol Microbiol 2003, 50(2):635-643. 10.1046/j.1365-2958.2003.03721.x 14617185
-
(2003)
Mol Microbiol
, vol.50
, Issue.2
, pp. 635-643
-
-
Benelli, D.1
Maone, E.2
Londei, P.3
-
51
-
-
37749051212
-
DNA and RNA elements involved in transcription and translation in halophilic Archaea
-
Brenneis M Hering O Lange C Soppa J DNA and RNA elements involved in transcription and translation in halophilic Archaea PLoS Genet 2007, e229.
-
(2007)
PLoS Genet
-
-
Brenneis, M.1
Hering, O.2
Lange, C.3
Soppa, J.4
-
52
-
-
34247122396
-
Protein biogenesis in Archaea: Addressing translation initiation using an in vitro protein synthesis system for Haloferax volcanii
-
10.1111/j.1574-6968.2007.00649.x 17286573
-
Ring G Londei P Eichler J Protein biogenesis in Archaea: Addressing translation initiation using an in vitro protein synthesis system for Haloferax volcanii FEMS Microbiol Lett 2007, 270(1):34-41. 10.1111/ j.1574-6968.2007.00649.x 17286573
-
(2007)
FEMS Microbiol Lett
, vol.270
, Issue.1
, pp. 34-41
-
-
Ring, G.1
Londei, P.2
Eichler, J.3
-
53
-
-
2342625231
-
Development of additional selectable markers for the halophilic archaeon Haloferax volcanii based on the leuB and trpA genes
-
348920 14766575 10.1128/AEM.70.2.943-953.2004
-
Allers T Ngo HP Mevarech M Lloyd RG Development of additional selectable markers for the halophilic archaeon Haloferax volcanii based on the leuB and trpA genes Appl Environ Microbiol 2004, 70(2):943-953. 348920 14766575 10.1128/AEM.70.2.943-953.2004
-
(2004)
Appl Environ Microbiol
, vol.70
, Issue.2
, pp. 943-953
-
-
Allers, T.1
Ngo, H.P.2
Mevarech, M.3
Lloyd, R.G.4
-
54
-
-
35448983080
-
Three 2-oxoacid dehydrogenase operons in Haloferax volcanii: Expression, deletion mutants, and evolution
-
10.1099/mic.0.2007/008508-0 17906130
-
van Ooyen J Soppa J Three 2-oxoacid dehydrogenase operons in Haloferax volcanii: Expression, deletion mutants, and evolution Microbiology 2007, 153:3303-3313. 10.1099/mic.0.2007/008508-0 17906130
-
(2007)
Microbiology
, vol.153
, pp. 3303-3313
-
-
van Ooyen, J.1
Soppa, J.2
-
55
-
-
0024962340
-
Bacteriorhodopsin mutants of Halobacterium sp. GRB. I. The 5-bromo-2′-deoxyuridine selection as a method to isolate point mutants in halobacteria
-
2753899
-
Soppa J Oesterhelt D Bacteriorhodopsin mutants of Halobacterium sp. GRB. I. The 5-bromo-2′-deoxyuridine selection as a method to isolate point mutants in halobacteria J Biol Chem 1989, 264(22):13043-13048. 2753899
-
(1989)
J Biol Chem
, vol.264
, Issue.22
, pp. 13043-13048
-
-
Soppa, J.1
Oesterhelt, D.2
-
56
-
-
0037309062
-
Development of a gene knockout system for the halophilic archaeon Haloferax volcanii by use of the pyrE gene
-
142808 12533452 10.1128/JB.185.3.772-778.2003
-
Bitan-Banin G Ortenberg R Mevarech M Development of a gene knockout system for the halophilic archaeon Haloferax volcanii by use of the pyrE gene J Bacteriol 2003, 185(3):772-778. 142808 12533452 10.1128/ JB.185.3.772-778.2003
-
(2003)
J Bacteriol
, vol.185
, Issue.3
, pp. 772-778
-
-
Bitan-Banin, G.1
Ortenberg, R.2
Mevarech, M.3
-
57
-
-
0024730742
-
Transformation of the archaebacterium Halobacterium volcanii with genomic DNA
-
210307 2768194
-
Cline SW Schalkwyk LC Doolittle WF Transformation of the archaebacterium Halobacterium volcanii with genomic DNA J Bacteriol 1989, 171(9):4987-4991. 210307 2768194
-
(1989)
J Bacteriol
, vol.171
, Issue.9
, pp. 4987-4991
-
-
Cline, S.W.1
Schalkwyk, L.C.2
Doolittle, W.F.3
-
58
-
-
0023277545
-
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
-
10.1016/0003-2697(87)90021-2 2440339
-
Chomczynski P Sacchi N Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction Anal Biochem 1987, 162(1):156-159. 10.1016/0003-2697(87)90021-2 2440339
-
(1987)
Anal Biochem
, vol.162
, Issue.1
, pp. 156-159
-
-
Chomczynski, P.1
Sacchi, N.2
-
59
-
-
0031057244
-
Rapid RNA isolation without the use of commercial kits: Application to small tissue samples
-
10.1007/s004240050328 9049153
-
Gauthier ER Madison SD Michel RN Rapid RNA isolation without the use of commercial kits: Application to small tissue samples Pflugers Arch 1997, 433(5):664-668. 10.1007/s004240050328 9049153
-
(1997)
Pflugers Arch
, vol.433
, Issue.5
, pp. 664-668
-
-
Gauthier, E.R.1
Madison, S.D.2
Michel, R.N.3
-
61
-
-
0000680161
-
Amplification of specific DNA sequences correlates with resistance of the archaebacterium Halobacterium volcanii to the dihydrofolate reductase inhibitors trimethoprim and methotrexate
-
10.1007/BF00328149
-
Rosenshine I Zusman T Werczberger R Mevarech M Amplification of specific DNA sequences correlates with resistance of the archaebacterium Halobacterium volcanii to the dihydrofolate reductase inhibitors trimethoprim and methotrexate Molecular and General Genetics MGG 1987, 208(3):518-522. 10.1007/BF00328149
-
(1987)
Molecular and General Genetics MGG
, vol.208
, Issue.3
, pp. 518-522
-
-
Rosenshine, I.1
Zusman, T.2
Werczberger, R.3
Mevarech, M.4
-
63
-
-
0035112667
-
PrimeArray: Genome-scale primer design for DNA-microarray construction
-
10.1093/bioinformatics/17.1.98 11222267
-
Raddatz G Dehio M Meyer TF Dehio C PrimeArray: Genome-scale primer design for DNA-microarray construction Bioinformatics 2001, 17(1):98-99. 10.1093/bioinformatics/17.1.98 11222267
-
(2001)
Bioinformatics
, vol.17
, Issue.1
, pp. 98-99
-
-
Raddatz, G.1
Dehio, M.2
Meyer, T.F.3
Dehio, C.4
|