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Volumn 9, Issue , 2009, Pages

Quantitative proteomics of nutrient limitation in the hydrogenotrophic methanogen Methanococcus maripaludis

Author keywords

[No Author keywords available]

Indexed keywords

CARRIER PROTEIN; HYDROGEN; HYDROGENASE; METHANE; MOLYBDIC ACID; NITROGEN; PHOSPHATE; PROTEOME; ARCHAEAL PROTEIN;

EID: 68849088492     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-9-149     Document Type: Article
Times cited : (50)

References (32)
  • 1
    • 47549119041 scopus 로고    scopus 로고
    • Methanogenic archaea: Ecologically relevant differences in energy conservation
    • 10.1038/nrmicro1931. 18587410
    • Methanogenic archaea: ecologically relevant differences in energy conservation. RK Thauer AK Kaster H Seedorf W Buckel R Hedderich, Nat Rev Microbiol 2008 6 8 579 591 10.1038/nrmicro1931 18587410
    • (2008) Nat Rev Microbiol , vol.6 , Issue.8 , pp. 579-591
    • Thauer, R.K.1    Kaster, A.K.2    Seedorf, H.3    Buckel, W.4    Hedderich, R.5
  • 2
    • 34249023906 scopus 로고    scopus 로고
    • Diverse homologues of the archaeal repressor NrpR function similarly in nitrogen regulation
    • 10.1111/j.1574-6968.2007.00726.x. 17456186
    • Diverse homologues of the archaeal repressor NrpR function similarly in nitrogen regulation. TJ Lie JA Dodsworth DC Nickle JA Leigh, FEMS Microbiol Lett 2007 271 2 281 288 10.1111/j.1574-6968.2007.00726.x 17456186
    • (2007) FEMS Microbiol Lett , vol.271 , Issue.2 , pp. 281-288
    • Lie, T.J.1    Dodsworth, J.A.2    Nickle, D.C.3    Leigh, J.A.4
  • 3
    • 0037221867 scopus 로고    scopus 로고
    • A novel repressor of nif and glnA expression in the methanogenic archaeon Methanococcus maripaludis
    • 10.1046/j.1365-2958.2003.03293.x. 12492867
    • A novel repressor of nif and glnA expression in the methanogenic archaeon Methanococcus maripaludis. TJ Lie JA Leigh, Mol Microbiol 2003 47 1 235 246 10.1046/j.1365-2958.2003.03293.x 12492867
    • (2003) Mol Microbiol , vol.47 , Issue.1 , pp. 235-246
    • Lie, T.J.1    Leigh, J.A.2
  • 4
    • 14044255851 scopus 로고    scopus 로고
    • Regulation of nif expression in Methanococcus maripaludis: Roles of the euryarchaeal repressor NrpR, 2-oxoglutarate, and two operators
    • 10.1074/jbc.M411778200. 15590692
    • Regulation of nif expression in Methanococcus maripaludis: roles of the euryarchaeal repressor NrpR, 2-oxoglutarate, and two operators. TJ Lie GE Wood JA Leigh, J Biol Chem 2005 280 7 5236 5241 10.1074/jbc.M411778200 15590692
    • (2005) J Biol Chem , vol.280 , Issue.7 , pp. 5236-5241
    • Lie, T.J.1    Wood, G.E.2    Leigh, J.A.3
  • 5
    • 34547405862 scopus 로고    scopus 로고
    • Functionally distinct genes regulated by hydrogen limitation and growth rate in methanogenic Archaea
    • 17502615. 10.1073/pnas.0701157104
    • Functionally distinct genes regulated by hydrogen limitation and growth rate in methanogenic Archaea. EL Hendrickson AK Haydock BC Moore WB Whitman JA Leigh, Proc Natl Acad Sci USA 2007 104 21 8930 8934 17502615 10.1073/pnas.0701157104
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.21 , pp. 8930-8934
    • Hendrickson, E.L.1    Haydock, A.K.2    Moore, B.C.3    Whitman, W.B.4    Leigh, J.A.5
  • 6
    • 40449095396 scopus 로고    scopus 로고
    • Global responses of Methanococcus maripaludis to specific nutrient limitations and growth rate
    • 18203827. 10.1128/JB.01805-07
    • Global responses of Methanococcus maripaludis to specific nutrient limitations and growth rate. EL Hendrickson Y Liu G Rosas-Sandoval I Porat D Söll WB Whitman JA Leigh, J Bacteriol 2008 190 6 2198 2205 18203827 10.1128/JB.01805-07
    • (2008) J Bacteriol , vol.190 , Issue.6 , pp. 2198-2205
    • Hendrickson, E.L.1    Liu, Y.2    Rosas-Sandoval, G.3    Porat, I.4    Söll, D.5    Whitman, W.B.6    Leigh, J.A.7
  • 8
    • 33646927488 scopus 로고    scopus 로고
    • Quantitative proteomics of the archaeon Methanococcus maripaludis validated by microarray analysis and real time PCR
    • 16489187. 10.1074/mcp.M500369-MCP200
    • Quantitative proteomics of the archaeon Methanococcus maripaludis validated by microarray analysis and real time PCR. Q Xia EL Hendrickson Y Zhang T Wang F Taub BC Moore I Porat WB Whitman M Hackett JA Leigh, Mol Cell Proteomics 2006 5 5 868 881 16489187 10.1074/mcp.M500369-MCP200
    • (2006) Mol Cell Proteomics , vol.5 , Issue.5 , pp. 868-881
    • Xia, Q.1    Hendrickson, E.L.2    Zhang, Y.3    Wang, T.4    Taub, F.5    Moore, B.C.6    Porat, I.7    Whitman, W.B.8    Hackett, M.9    Leigh, J.A.10
  • 9
    • 4444244015 scopus 로고    scopus 로고
    • Continuous culture of Methanococcus maripaludis under defined nutrient conditions
    • 15336407
    • Continuous culture of Methanococcus maripaludis under defined nutrient conditions. AK Haydock I Porat WB Whitman JA Leigh, FEMS Microbiol Lett 2004 238 1 85 91 15336407
    • (2004) FEMS Microbiol Lett , vol.238 , Issue.1 , pp. 85-91
    • Haydock, A.K.1    Porat, I.2    Whitman, W.B.3    Leigh, J.A.4
  • 10
    • 34548462446 scopus 로고    scopus 로고
    • Protein abundance ratios for global studies of prokaryotes
    • 17639608. 10.1002/pmic.200700267
    • Protein abundance ratios for global studies of prokaryotes. Q Xia EL Hendrickson T Wang RJ Lamont JA Leigh M Hackett, Proteomics 2007 7 2904 2919 17639608 10.1002/pmic.200700267
    • (2007) Proteomics , vol.7 , pp. 2904-2919
    • Xia, Q.1    Hendrickson, E.L.2    Wang, T.3    Lamont, R.J.4    Leigh, J.A.5    Hackett, M.6
  • 11
    • 13244269794 scopus 로고    scopus 로고
    • Markerless mutagenesis in Methanococcus maripaludis demonstrates roles for alanine dehydrogenase, alanine racemase, and alanine permease
    • 15659675. 10.1128/JB.187.3.972-979.2005
    • Markerless mutagenesis in Methanococcus maripaludis demonstrates roles for alanine dehydrogenase, alanine racemase, and alanine permease. BC Moore JA Leigh, J Bacteriol 2005 187 3 972 979 15659675 10.1128/JB.187.3.972-979.2005
    • (2005) J Bacteriol , vol.187 , Issue.3 , pp. 972-979
    • Moore, B.C.1    Leigh, J.A.2
  • 12
    • 0000739582 scopus 로고    scopus 로고
    • Reactions with molecular hydrogen in microorganisms: Evidence for a purely organic hydrogenation catalyst
    • 10.1021/cr9500601. 11848851
    • Reactions with molecular hydrogen in microorganisms: evidence for a purely organic hydrogenation catalyst. RK Thauer AR Klein GC Hartmann, Chem Rev 1996 96 7 3031 3042 10.1021/cr9500601 11848851
    • (1996) Chem Rev , vol.96 , Issue.7 , pp. 3031-3042
    • Thauer, R.K.1    Klein, A.R.2    Hartmann, G.C.3
  • 14
    • 0036777897 scopus 로고    scopus 로고
    • Regulatory response of Methanococcus maripaludis to alanine, an intermediate nitrogen source
    • 12218015. 10.1128/JB.184.19.5301-5306.2002
    • Regulatory response of Methanococcus maripaludis to alanine, an intermediate nitrogen source. TJ Lie JA Leigh, J Bacteriol 2002 184 19 5301 5306 12218015 10.1128/JB.184.19.5301-5306.2002
    • (2002) J Bacteriol , vol.184 , Issue.19 , pp. 5301-5306
    • Lie, T.J.1    Leigh, J.A.2
  • 15
    • 0031019644 scopus 로고    scopus 로고
    • Transcriptional regulation in Archaea: In vivo demonstration of a repressor binding site in a methanogen
    • 9037050. 10.1073/pnas.94.4.1316
    • Transcriptional regulation in Archaea: in vivo demonstration of a repressor binding site in a methanogen. R Cohen-Kupiec C Blank JA Leigh, Proc Natl Acad Sci USA 1997 94 4 1316 1320 9037050 10.1073/pnas.94.4.1316
    • (1997) Proc Natl Acad Sci USA , vol.94 , Issue.4 , pp. 1316-1320
    • Cohen-Kupiec, R.1    Blank, C.2    Leigh, J.A.3
  • 16
    • 0032899732 scopus 로고    scopus 로고
    • Function and regulation of glnA in the methanogenic archaeon Methanococcus maripaludis
    • 9864338
    • Function and regulation of glnA in the methanogenic archaeon Methanococcus maripaludis. R Cohen-Kupiec CJ Marx JA Leigh, J Bacteriol 1999 181 1 256 261 9864338
    • (1999) J Bacteriol , vol.181 , Issue.1 , pp. 256-261
    • Cohen-Kupiec, R.1    Marx, C.J.2    Leigh, J.A.3
  • 17
    • 42149150462 scopus 로고    scopus 로고
    • The phosphate regulon and bacterial virulence: A regulatory network connecting phosphate homeostasis and pathogenesis
    • 10.1111/j.1574-6976.2008.00101.x. 18248418
    • The phosphate regulon and bacterial virulence: a regulatory network connecting phosphate homeostasis and pathogenesis. MG Lamarche BL Wanner S Crepin J Harel, FEMS Microbiol Rev 2008 32 3 461 473 10.1111/j.1574-6976.2008. 00101.x 18248418
    • (2008) FEMS Microbiol Rev , vol.32 , Issue.3 , pp. 461-473
    • Lamarche, M.G.1    Wanner, B.L.2    Crepin, S.3    Harel, J.4
  • 18
    • 0034633401 scopus 로고    scopus 로고
    • 2 control on the expression of flagella in the hyperthermophilic strictly hydrogenotrophic methanarchaeaon Methanococcus jannaschii
    • 11027352. 10.1073/pnas.97.21.11522
    • 2 control on the expression of flagella in the hyperthermophilic strictly hydrogenotrophic methanarchaeaon Methanococcus jannaschii. B Mukhopadhyay EF Johnson RS Wolfe, Proc Natl Acad Sci USA 2000 97 11522 11527 11027352 10.1073/pnas.97.21.11522
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 11522-11527
    • Mukhopadhyay, B.1    Johnson, E.F.2    Wolfe, R.S.3
  • 19
    • 35448984675 scopus 로고    scopus 로고
    • Nitrogen regulation in bacteria and archaea
    • 10.1146/annurev.micro.61.080706.093409. 17506680
    • Nitrogen regulation in bacteria and archaea. JA Leigh JA Dodsworth, Annu Rev Microbiol 2007 61 349 377 10.1146/annurev.micro.61.080706.093409 17506680
    • (2007) Annu Rev Microbiol , vol.61 , pp. 349-377
    • Leigh, J.A.1    Dodsworth, J.A.2
  • 20
    • 33745394713 scopus 로고    scopus 로고
    • Global transcriptional analysis of Methanosarcina mazei strain Go1 under different nitrogen availabilities
    • 10.1007/s00438-006-0117-9. 16625354
    • Global transcriptional analysis of Methanosarcina mazei strain Go1 under different nitrogen availabilities. K Veit C Ehlers A Ehrenreich K Salmon R Hovey RP Gunsalus U Deppenmeier RA Schmitz, Mol Genet Genomics 2006 276 1 41 55 10.1007/s00438-006-0117-9 16625354
    • (2006) Mol Genet Genomics , vol.276 , Issue.1 , pp. 41-55
    • Veit, K.1    Ehlers, C.2    Ehrenreich, A.3    Salmon, K.4    Hovey, R.5    Gunsalus, R.P.6    Deppenmeier, U.7    Schmitz, R.A.8
  • 21
    • 0036535357 scopus 로고    scopus 로고
    • Analysis of quantitative proteomic data generated via multidimensional protein identification technology
    • 10.1021/ac015704l. 12043600
    • Analysis of quantitative proteomic data generated via multidimensional protein identification technology. MP Washburn R Ulaszek C Deciu DM Schieltz JR Yates 3rd, Anal Chem 2002 74 1650 1657 10.1021/ac015704l 12043600
    • (2002) Anal Chem , vol.74 , pp. 1650-1657
    • Washburn, M.P.1    Ulaszek, R.2    Deciu, C.3    Schieltz, D.M.4    Yates III, J.R.5
  • 22
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database
    • 10.1016/1044-0305(94)80016-2
    • An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database. JK Eng AL McCormack JR Yates 3rd, J Am Soc Mass Spectrum 1994 5 976 989 10.1016/1044-0305(94)80016-2
    • (1994) J Am Soc Mass Spectrum , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates III, J.R.3
  • 23
    • 0036393898 scopus 로고    scopus 로고
    • DTASelect and Contrast: Tools for assembling and comparing protein identifications from shotgun proteomics
    • 10.1021/pr015504q. 12643522
    • DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. DL Tabb WH McDonald JR Yates 3rd, J Proteome Res 2002 1 21 26 10.1021/pr015504q 12643522
    • (2002) J Proteome Res , vol.1 , pp. 21-26
    • Tabb, D.L.1    McDonald, W.H.2    Yates III, J.R.3
  • 24
    • 0017184389 scopus 로고
    • A Rapid and Sensitive Method for the Quantitation of Microgram Quantities of Protein Utilizing the Principle of Protein-Dye Binding
    • 10.1016/0003-2697(76)90527-3. 942051
    • A Rapid and Sensitive Method for the Quantitation of Microgram Quantities of Protein Utilizing the Principle of Protein-Dye Binding. MM Bradford, Anal Biochem 1976 72 248 254 10.1016/0003-2697(76)90527-3 942051
    • (1976) Anal Biochem , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 25
    • 0029917011 scopus 로고    scopus 로고
    • Linearization of the Bradford protein assay increases its sensitivity: Theoretical and experimental studies
    • 10.1006/abio.1996.0171. 8660509
    • Linearization of the Bradford protein assay increases its sensitivity: theoretical and experimental studies. T Zor Z Selinger, Anal Biochem 1996 236 302 308 10.1006/abio.1996.0171 8660509
    • (1996) Anal Biochem , vol.236 , pp. 302-308
    • Zor, T.1    Selinger, Z.2
  • 26
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genome wide studies
    • 12883005. 10.1073/pnas.1530509100
    • Statistical significance for genome wide studies. JD Storey R Tibshirani, Proc Natl Acad Sci USA 2003 100 9440 9445 12883005 10.1073/pnas.1530509100
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 27
    • 33750620682 scopus 로고    scopus 로고
    • Differential quantitative proteomics of Porphyromonas gingivalis by linear ion trap mass spectrometry: Non-label methods comparison, q-values and LOWESS curve fitting
    • 19337574. 10.1016/j.ijms.2006.08.004
    • Differential quantitative proteomics of Porphyromonas gingivalis by linear ion trap mass spectrometry: Non-label methods comparison, q-values and LOWESS curve fitting. Q Xia T Wang Y Park RJ Lamont M Hackett, Int J Mass Spectrom 2007 259 105 116 19337574 10.1016/j.ijms.2006.08.004
    • (2007) Int J Mass Spectrom , vol.259 , pp. 105-116
    • Xia, Q.1    Wang, T.2    Park, Y.3    Lamont, R.J.4    Hackett, M.5
  • 28
    • 0037277179 scopus 로고    scopus 로고
    • Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: The yeast proteome
    • 10.1021/pr025556v. 12643542
    • Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J Peng JE Elias CC Thoreen LJ Licklider SP Gygi, J Proteome Res 2003 2 43 50 10.1021/pr025556v 12643542
    • (2003) J Proteome Res , vol.2 , pp. 43-50
    • Peng, J.1    Elias, J.E.2    Thoreen, C.C.3    Licklider, L.J.4    Gygi, S.P.5
  • 29
    • 0742305695 scopus 로고    scopus 로고
    • Intensity-based protein identification by machine learning from a library of tandem mass spectra
    • 10.1038/nbt930. 14730315
    • Intensity-based protein identification by machine learning from a library of tandem mass spectra. JE Elias FD Gibbons OD King FP Roth SP Gygi, Nat Biotechnol 2004 22 214 219 10.1038/nbt930 14730315
    • (2004) Nat Biotechnol , vol.22 , pp. 214-219
    • Elias, J.E.1    Gibbons, F.D.2    King, O.D.3    Roth, F.P.4    Gygi, S.P.5
  • 32
    • 0028168940 scopus 로고
    • Transformation of Methanococcus maripaludis and identification of a Pst I-like restriction system
    • 10.1111/j.1574-6968.1994.tb07118.x
    • Transformation of Methanococcus maripaludis and identification of a Pst I-like restriction system. DL Tumbula RA Makula WB Whitman, FEMS Microbiol Lett 1994 121 309 314 10.1111/j.1574-6968.1994.tb07118.x
    • (1994) FEMS Microbiol Lett , vol.121 , pp. 309-314
    • Tumbula, D.L.1    Makula, R.A.2    Whitman, W.B.3


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