메뉴 건너뛰기




Volumn 35, Issue 3, 2000, Pages 667-676

Homologous gene knockout in the archaeon Halobacterium salinarum with ura3 as a counterselectable marker

Author keywords

[No Author keywords available]

Indexed keywords

FLUOROOROTIC ACID; OROTIDINE 5' PHOSPHATE DECARBOXYLASE;

EID: 0033962956     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.2000.01739.x     Document Type: Article
Times cited : (152)

References (51)
  • 2
    • 0032102006 scopus 로고    scopus 로고
    • Transcription and translation in Archaea: A mosaic of eukaryal and bacterial features
    • Bell, S.D., and Jackson, S.P. (1998) Transcription and translation in Archaea: a mosaic of eukaryal and bacterial features. Trends Microbiol 6: 222-228.
    • (1998) Trends Microbiol , vol.6 , pp. 222-228
    • Bell, S.D.1    Jackson, S.P.2
  • 3
    • 0025133287 scopus 로고
    • Transformation of Halobacterium halobium: Development of vectors and investigation of gas vesicle synthesis
    • Blaseio, U., and Pfeifer, F. (1990) Transformation of Halobacterium halobium: development of vectors and investigation of gas vesicle synthesis. Proc Natl Acad Sci USA 87: 6772-6776.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 6772-6776
    • Blaseio, U.1    Pfeifer, F.2
  • 4
    • 0021668558 scopus 로고
    • A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance
    • Boeke, J.D., LaCroute, F., and Fink, G.R. (1984) A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Mol Gen Genet 197: 345-346.
    • (1984) Mol Gen Genet , vol.197 , pp. 345-346
    • Boeke, J.D.1    LaCroute, F.2    Fink, G.R.3
  • 5
    • 16044367245 scopus 로고    scopus 로고
    • Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
    • Bult, C.J., White, O., Olsen, G.J., Zhou, L., Fleischmann, R.D., Sutton, G.G., et al. (1996) Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science 273: 1058-1073.
    • (1996) Science , vol.273 , pp. 1058-1073
    • Bult, C.J.1    White, O.2    Olsen, G.J.3    Zhou, L.4    Fleischmann, R.D.5    Sutton, G.G.6
  • 6
    • 0023099215 scopus 로고
    • Efficient transfection of the archaebacterium Halobacterium halobium
    • Cline, S.W., and Doolittle, W.F. (1987) Efficient transfection of the archaebacterium Halobacterium halobium. J Bacteriol 169: 1341-1344.
    • (1987) J Bacteriol , vol.169 , pp. 1341-1344
    • Cline, S.W.1    Doolittle, W.F.2
  • 8
    • 0033529622 scopus 로고    scopus 로고
    • Membrane insertion kinetics of a protein domain in vivo: The bacterioopsin N terminus inserts co-translationally
    • Dale, H., and Krebs, M.P. (1999) Membrane insertion kinetics of a protein domain in vivo: the bacterioopsin N terminus inserts co-translationally. J Biol Chem 274: 22693-22698.
    • (1999) J Biol Chem , vol.274 , pp. 22693-22698
    • Dale, H.1    Krebs, M.P.2
  • 9
    • 0024602104 scopus 로고
    • Mechanisms of genetic variability in Halobacterium halobium: The purple membrane and gas vesicle mutations
    • DasSarma, S. (1989) Mechanisms of genetic variability in Halobacterium halobium: the purple membrane and gas vesicle mutations. Can J Microbiol 35: 65-72.
    • (1989) Can J Microbiol , vol.35 , pp. 65-72
    • DasSarma, S.1
  • 10
    • 0030814406 scopus 로고    scopus 로고
    • Genetic analysis of the gas vesicle gene cluster in haloarchaea
    • DasSarma, S., and Arora, P. (1997) Genetic analysis of the gas vesicle gene cluster in haloarchaea. FEMS Microbiol Lett 153: 1-10.
    • (1997) FEMS Microbiol Lett , vol.153 , pp. 1-10
    • DasSarma, S.1    Arora, P.2
  • 11
    • 0031587877 scopus 로고    scopus 로고
    • Ancient ciphers: Translation in Archaea
    • Dennis, P.P. (1997) Ancient ciphers: translation in Archaea. Cell 89: 1007-1010.
    • (1997) Cell , vol.89 , pp. 1007-1010
    • Dennis, P.P.1
  • 12
    • 0031587829 scopus 로고    scopus 로고
    • Archaea and the origin(s) of DNA replication proteins
    • Edgell, D.R., and Doolittle, W.F. (1997) Archaea and the origin(s) of DNA replication proteins. Cell 89: 995-998.
    • (1997) Cell , vol.89 , pp. 995-998
    • Edgell, D.R.1    Doolittle, W.F.2
  • 13
    • 0027536538 scopus 로고
    • Homologous bacterio-opsin-encoding gene expression via site-specific vector integration
    • Ferrando, E., Schweiger, U., and Oesterhelt, D. (1993) Homologous bacterio-opsin-encoding gene expression via site-specific vector integration. Gene 125: 41-47.
    • (1993) Gene , vol.125 , pp. 41-47
    • Ferrando, E.1    Schweiger, U.2    Oesterhelt, D.3
  • 14
    • 0033534532 scopus 로고    scopus 로고
    • Novel organization and sequences of five genes encoding all six enzymes for de novo pyrimidine biosynthesis in Trypanosoma cruzi
    • Gao, G., Nara, T., Nakajima-Shimada, J., and Aoki, T. (1999) Novel organization and sequences of five genes encoding all six enzymes for de novo pyrimidine biosynthesis in Trypanosoma cruzi. J Mol Biol 285: 149-161.
    • (1999) J Mol Biol , vol.285 , pp. 149-161
    • Gao, G.1    Nara, T.2    Nakajima-Shimada, J.3    Aoki, T.4
  • 15
    • 0017229826 scopus 로고
    • An improved synthetic growth medium for Halobacterium cutirubrum
    • Grey, V.L., and Fitt, P.S. (1976) An improved synthetic growth medium for Halobacterium cutirubrum. Can J Microbiol 22: 440-442.
    • (1976) Can J Microbiol , vol.22 , pp. 440-442
    • Grey, V.L.1    Fitt, P.S.2
  • 16
    • 0032987196 scopus 로고    scopus 로고
    • Closing in on bacteriorhodopsin: Progress in understanding the molecule
    • Haupts, U., Tittor, J., and Oesterhelt, D. (1999) Closing in on bacteriorhodopsin: progress in understanding the molecule. Annu Rev Biophys Biomol Struct 28: 367-399.
    • (1999) Annu Rev Biophys Biomol Struct , vol.28 , pp. 367-399
    • Haupts, U.1    Tittor, J.2    Oesterhelt, D.3
  • 17
    • 0030906654 scopus 로고    scopus 로고
    • Molecular mechanism of photosignaling by archaeal sensory rhodopsins
    • Hoff, W.D., Jung, K.H., and Spudich, J.L. (1997) Molecular mechanism of photosignaling by archaeal sensory rhodopsins. Annu Rev Biophys Biomol Struct 26: 223-258.
    • (1997) Annu Rev Biophys Biomol Struct , vol.26 , pp. 223-258
    • Hoff, W.D.1    Jung, K.H.2    Spudich, J.L.3
  • 18
    • 0025099311 scopus 로고
    • A plasmid vector with a selectable marker for halophilic archaebacteria
    • Holmes, M.L., and Dyall-Smith, M.L. (1990) A plasmid vector with a selectable marker for halophilic archaebacteria. J Bacteriol 172: 756-761.
    • (1990) J Bacteriol , vol.172 , pp. 756-761
    • Holmes, M.L.1    Dyall-Smith, M.L.2
  • 19
    • 0033551432 scopus 로고    scopus 로고
    • Role of helix-helix interactions in assembly of the bacteriorhodopsin lattice
    • Isenbarger, T.A., and Krebs, M.P. (1999) Role of helix-helix interactions in assembly of the bacteriorhodopsin lattice. Biochemistry 38: 9023-9030.
    • (1999) Biochemistry , vol.38 , pp. 9023-9030
    • Isenbarger, T.A.1    Krebs, M.P.2
  • 20
    • 0032579989 scopus 로고    scopus 로고
    • Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3
    • Kawarabayasi, Y., Sawada, M., Horikawa, H., Haikawa, Y., Hino, Y., Yamamoto, S., et al. (1998) Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3. DNA Res 5: 55-76.
    • (1998) DNA Res , vol.5 , pp. 55-76
    • Kawarabayasi, Y.1    Sawada, M.2    Horikawa, H.3    Haikawa, Y.4    Hino, Y.5    Yamamoto, S.6
  • 21
    • 0033616977 scopus 로고    scopus 로고
    • Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1
    • Kawarabayasi, Y., Hino, Y., Horikawa, H., Yamazaki, S., Haikawa, Y., Jin-no, K., et al. (1999) Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1. DNA Res 6: 83-101, 145-152.
    • (1999) DNA Res , vol.6 , pp. 83-101
    • Kawarabayasi, Y.1    Hino, Y.2    Horikawa, H.3    Yamazaki, S.4    Haikawa, Y.5    Jin-No, K.6
  • 22
    • 0031458333 scopus 로고    scopus 로고
    • The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
    • Klenk, H.P., Clayton, R.A., Tomb, J.F., White, O., Nelson, K.E., Ketchum, K.A., et al. (1997) The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 390: 364-370.
    • (1997) Nature , vol.390 , pp. 364-370
    • Klenk, H.P.1    Clayton, R.A.2    Tomb, J.F.3    White, O.4    Nelson, K.E.5    Ketchum, K.A.6
  • 23
    • 0031009872 scopus 로고    scopus 로고
    • Unmarked gene integration into the chromosome of Mycobacterium smegmatis via precise replacement of the pyrF gene
    • Knipfer, N., Seth, A., and Shrader, T.E. (1997) Unmarked gene integration into the chromosome of Mycobacterium smegmatis via precise replacement of the pyrF gene. Plasmid 37: 129-140.
    • (1997) Plasmid , vol.37 , pp. 129-140
    • Knipfer, N.1    Seth, A.2    Shrader, T.E.3
  • 24
    • 0025788345 scopus 로고
    • Positive selection for uracil auxotrophs of the sulfur-dependent thermophilic archaebacterium Sulfolobus acidocaldarius by use of 5-fluoroorotic acid
    • Kondo, S., Yamagishi, A., and Oshima, T. (1991) Positive selection for uracil auxotrophs of the sulfur-dependent thermophilic archaebacterium Sulfolobus acidocaldarius by use of 5-fluoroorotic acid. J Bacteriol: 7698-7700.
    • (1991) J Bacteriol , pp. 7698-7700
    • Kondo, S.1    Yamagishi, A.2    Oshima, T.3
  • 25
    • 0026023558 scopus 로고
    • Expression of the bacterioopsin gene in Halobacterium halobium using a multicopy plasmid
    • Krebs, M.P., Hauss, T., Heyn, M.P., RajBhandary, U.L., and Khorana, H.G. (1991) Expression of the bacterioopsin gene in Halobacterium halobium using a multicopy plasmid. Proc Natl Acad Sci USA 88: 859-863.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 859-863
    • Krebs, M.P.1    Hauss, T.2    Heyn, M.P.3    RajBhandary, U.L.4    Khorana, H.G.5
  • 26
    • 0027513571 scopus 로고
    • Gene replacement in Halobacterium halobium and expression of bacteriorhodopsin mutants
    • Krebs, M.P., Mollaaghababa, R., and Khorana, H.G. (1993) Gene replacement in Halobacterium halobium and expression of bacteriorhodopsin mutants. Proc Natl Acad Sci USA 90: 1987-1991.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 1987-1991
    • Krebs, M.P.1    Mollaaghababa, R.2    Khorana, H.G.3
  • 27
    • 0029445538 scopus 로고
    • Rapid high-yield purification and liposome reconstitution of polyhistidine-tagged sensory rhodopsin I
    • Krebs, M.P., Spudich, E.N., and Spudich, J.L. (1995) Rapid high-yield purification and liposome reconstitution of polyhistidine-tagged sensory rhodopsin I. Protein Expr Purif 6: 780-788.
    • (1995) Protein Expr Purif , vol.6 , pp. 780-788
    • Krebs, M.P.1    Spudich, E.N.2    Spudich, J.L.3
  • 28
    • 0031582073 scopus 로고    scopus 로고
    • Intramembrane substitutions in helix D of bacteriorhodopsin disrupt the purple membrane
    • Krebs, M.P., Li, W., and Halambeck, T.P. (1997) Intramembrane substitutions in helix D of bacteriorhodopsin disrupt the purple membrane. J Mol Biol 267: 172-183.
    • (1997) J Mol Biol , vol.267 , pp. 172-183
    • Krebs, M.P.1    Li, W.2    Halambeck, T.P.3
  • 29
    • 0024706289 scopus 로고
    • Shuttle vectors for the archaebacterium Halobacterium volcanii
    • Lam, W.L., and Doolittle, W.F. (1989) Shuttle vectors for the archaebacterium Halobacterium volcanii. Proc Natl Acad Sci USA 86: 5478-5482.
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 5478-5482
    • Lam, W.L.1    Doolittle, W.F.2
  • 30
    • 0031282975 scopus 로고    scopus 로고
    • Mechanism of ion transport across membranes. Bacteriorhodopsin as a prototype for proton pumps
    • Lanyi, U.K. (1997) Mechanism of ion transport across membranes. Bacteriorhodopsin as a prototype for proton pumps. J Biol Chem 272: 31209-31212.
    • (1997) J Biol Chem , vol.272 , pp. 31209-31212
    • Lanyi, U.K.1
  • 31
    • 0030796260 scopus 로고    scopus 로고
    • Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: Application to open reading frame characterization
    • Link, A.J., Phillips, D., and Church, G.M. (1997) Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization. J Bacteriol 179: 6228-6237.
    • (1997) J Bacteriol , vol.179 , pp. 6228-6237
    • Link, A.J.1    Phillips, D.2    Church, G.M.3
  • 32
    • 0026721044 scopus 로고
    • Introducing mutations into the single-copy chromosomal 23S rRNA gene of the archaeon Halobacterium halobium by using an rRNA operon-based transformation system
    • Mankin, A.S., Zyrianova, I.M., Kagramanova, V.K., and Garrett, R.A. (1992) Introducing mutations into the single-copy chromosomal 23S rRNA gene of the archaeon Halobacterium halobium by using an rRNA operon-based transformation system. Proc Natl Acad Sci USA 89: 6535-6539.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 6535-6539
    • Mankin, A.S.1    Zyrianova, I.M.2    Kagramanova, V.K.3    Garrett, R.A.4
  • 33
    • 0030900723 scopus 로고    scopus 로고
    • A genetic system for Archaea of the genus Methanosarcina : Liposome-mediated transformation and construction of shuttle vectors
    • Metcalf, W.W., Zhang, J.K., Apolinario, E., Sowers, K.R., and Wolfe, R.S. (1997) A genetic system for Archaea of the genus Methanosarcina : liposome-mediated transformation and construction of shuttle vectors. Proc Natl Acad Sci USA 94: 2626-2631.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 2626-2631
    • Metcalf, W.W.1    Zhang, J.K.2    Apolinario, E.3    Sowers, K.R.4    Wolfe, R.S.5
  • 34
    • 17444373082 scopus 로고    scopus 로고
    • Snapshot of a large dynamic replicon in a halophilic archaeon: Megaplasmid or mini-chromosome?
    • Ng, W.V., Ciufo, S.A., Smith, T.M., Bumgarner, R.E., Baskin, D., Faust, J., et al. (1998) Snapshot of a large dynamic replicon in a halophilic archaeon: megaplasmid or mini-chromosome? Genome Res 8: 1131-1141.
    • (1998) Genome Res , vol.8 , pp. 1131-1141
    • Ng, W.V.1    Ciufo, S.A.2    Smith, T.M.3    Bumgarner, R.E.4    Baskin, D.5    Faust, J.6
  • 35
    • 0025303033 scopus 로고
    • An efficient system for the synthesis of bacteriorhodopsin in Halobacterium halobium
    • Ni, B.F., Chang, M., Duschl, A., Lanyi, J., and Needleman, R. (1990) An efficient system for the synthesis of bacteriorhodopsin in Halobacterium halobium. Gene 90: 169-172.
    • (1990) Gene , vol.90 , pp. 169-172
    • Ni, B.F.1    Chang, M.2    Duschl, A.3    Lanyi, J.4    Needleman, R.5
  • 36
    • 0029973775 scopus 로고    scopus 로고
    • A network approach to the systematic analysis of yeast gene function
    • Oliver, S. (1996) A network approach to the systematic analysis of yeast gene function. Trends Genet 12: 241-242.
    • (1996) Trends Genet , vol.12 , pp. 241-242
    • Oliver, S.1
  • 39
    • 0031587824 scopus 로고    scopus 로고
    • Archaeal histones, nucleosomes, and transcription initiation
    • Reeve, J.N., Sandman, K., and Daniels, C.J. (1997) Archaeal histones, nucleosomes, and transcription initiation. Cell 89: 999-1002.
    • (1997) Cell , vol.89 , pp. 999-1002
    • Reeve, J.N.1    Sandman, K.2    Daniels, C.J.3
  • 41
    • 0019973910 scopus 로고
    • High-frequency genomic rearrangements involving archaebacterial repeat sequence elements
    • Sapienza, C., Rose, M.R., and Doolittle, W.F. (1982) High-frequency genomic rearrangements involving archaebacterial repeat sequence elements. Nature 299: 182-185.
    • (1982) Nature , vol.299 , pp. 182-185
    • Sapienza, C.1    Rose, M.R.2    Doolittle, W.F.3
  • 42
    • 0040986007 scopus 로고
    • A transposable element from Halobacterium halobium which inactivates the bacteriorhodopsin gene
    • Simsek, M., DasSarma, S., RajBhandary, U.L., and Khorana, H.G. (1982) A transposable element from Halobacterium halobium which inactivates the bacteriorhodopsin gene. Proc Natl Acad Sci USA 79: 7268-7272.
    • (1982) Proc Natl Acad Sci USA , vol.79 , pp. 7268-7272
    • Simsek, M.1    DasSarma, S.2    RajBhandary, U.L.3    Khorana, H.G.4
  • 43
    • 15644383855 scopus 로고    scopus 로고
    • Complete genome sequence of Methanobacterium thermoautotrophicum δH: Functional analysis and comparative genomics
    • Smith, D.R., Doucette-Stamm, L.A., Deloughery, C., Lee, H., Dubois, J., Aldredge, T., et al. (1997) Complete genome sequence of Methanobacterium thermoautotrophicum ΔH: functional analysis and comparative genomics. J Bacteriol 179: 7135-7155.
    • (1997) J Bacteriol , vol.179 , pp. 7135-7155
    • Smith, D.R.1    Doucette-Stamm, L.A.2    Deloughery, C.3    Lee, H.4    Dubois, J.5    Aldredge, T.6
  • 44
    • 0028349908 scopus 로고
    • Compilation of halobacterial protein coding genes, the halobacterial codon usage table and its use
    • Soppa, J. (1994) Compilation of halobacterial protein coding genes, the halobacterial codon usage table and its use. Syst Appl Microbiol 16: 725-733.
    • (1994) Syst Appl Microbiol , vol.16 , pp. 725-733
    • Soppa, J.1
  • 45
    • 0033052407 scopus 로고    scopus 로고
    • Transcription initiation in Archaea: Facts, factors and future aspects
    • Soppa, J. (1999) Transcription initiation in Archaea: facts, factors and future aspects. Mol Microbiol 31: 1295-1305.
    • (1999) Mol Microbiol , vol.31 , pp. 1295-1305
    • Soppa, J.1
  • 46
    • 0014109811 scopus 로고
    • A morphological study of Halobacterium halobium and its lysis in media of low salt concentration
    • Stoeckenius, W., and Rowen, R. (1967) A morphological study of Halobacterium halobium and its lysis in media of low salt concentration. J Cell Biol 34: 365-393.
    • (1967) J Cell Biol , vol.34 , pp. 365-393
    • Stoeckenius, W.1    Rowen, R.2
  • 47
    • 0014322650 scopus 로고
    • Further characterization of particulate fractions from lysed cell envelopes of Halobacterium halobium and isolation of gas vacuole membranes
    • Stoeckenius, W., and Kunau, W.H. (1968) Further characterization of particulate fractions from lysed cell envelopes of Halobacterium halobium and isolation of gas vacuole membranes. J Cell Biol 38: 337-357.
    • (1968) J Cell Biol , vol.38 , pp. 337-357
    • Stoeckenius, W.1    Kunau, W.H.2
  • 48
    • 0033104510 scopus 로고    scopus 로고
    • Car: A cytoplasmic sensor responsible for arginine chemotaxis in the archaeon Halobacterium salinarum
    • Storch, K.F., Rudolph, J., and Oesterhelt, D. (1999) Car: a cytoplasmic sensor responsible for arginine chemotaxis in the archaeon Halobacterium salinarum. EMBO J 18: 1146-1158.
    • (1999) EMBO J , vol.18 , pp. 1146-1158
    • Storch, K.F.1    Rudolph, J.2    Oesterhelt, D.3
  • 49
    • 0001271789 scopus 로고
    • Phylogenetic structure of the prokaryotic domain: The primary kingdoms
    • Woese, C.R., and Fox, G.E. (1977) Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc Natl Acad Sci USA 74: 5088-5090.
    • (1977) Proc Natl Acad Sci USA , vol.74 , pp. 5088-5090
    • Woese, C.R.1    Fox, G.E.2
  • 50
    • 0030001222 scopus 로고    scopus 로고
    • Pyrimidine biosynthesis genes (pyrE and pyrF) of an extreme thermophile, Thermus thermophilus
    • Yamagishi, A., Tanimoto, T., Suzuki, T., and Oshima, T. (1996) Pyrimidine biosynthesis genes (pyrE and pyrF) of an extreme thermophile, Thermus thermophilus. Appl Environ Microbiol 62: 2191-2194.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 2191-2194
    • Yamagishi, A.1    Tanimoto, T.2    Suzuki, T.3    Oshima, T.4
  • 51
    • 0030011386 scopus 로고    scopus 로고
    • Signal transduction in the archaeon Halobacterium salinarium is processed through three subfamilies of 13 soluble and membrane-bound transducer proteins
    • Zhang, W., Brooun, A., McCandless, J., Banda, P., and Alam, M. (1996) Signal transduction in the archaeon Halobacterium salinarium is processed through three subfamilies of 13 soluble and membrane-bound transducer proteins. Proc Natl Acad Sci USA 93: 4649-4654.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 4649-4654
    • Zhang, W.1    Brooun, A.2    McCandless, J.3    Banda, P.4    Alam, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.