A multilocus study of pine grosbeak phylogeography supports the pattern of greater intercontinental divergence in Holarctic boreal forest birds than in birds inhabiting other high-latitude habitats

Journal of Biogeography

Volumn 37, Issue 4, 2010, Pages 696-706

  Drovetski, Sergei V ^a   Zink, Robert M ^b   Ericson, Per G P ^c   Fadeev, Igor V ^d  

^a CENTRO DE INVESTIGAÇÃO EM BIODIVERSIDADE E RECURSOS GENÉTICOS   (Portugal)

^b UNIVERSITY OF MINNESOTA   (United States)

^c SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

^d State Darwin Museum   (Russian Federation)

Author keywords

Boreal forest birds; Holarctic; MtDNA; Phylogeography; Pine grosbeak; Pinicola enucleator; Z chromosome

Indexed keywords

BOREAL FOREST; CLADISTICS; COLONIZATION; DIVERGENCE; GENETIC ANALYSIS; HOLARCTIC REGION; MAXIMUM LIKELIHOOD ANALYSIS; PASSERINE; PHYLOGEOGRAPHY; PLIOCENE; SYMPATRY;

AVES; PICOIDES TRIDACTYLUS; PINICOLA; PINICOLA ENUCLEATOR; TROGLODYTES TROGLODYTES;

EID: 77952046139     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/j.1365-2699.2009.02234.x     Document Type: Article

References (53)

1. Adkisson CS. Pine grosbeak (Pinicola enucleator). The birds of North America online 1999, http://bna.birds.cornell.edu.bnaproxy.birds.cornell.edu/bna/species/456, 10.2173/bna.456, Poole A. ed. by, no. 456, Cornell Lab of Ornithology, Ithaca, Available at: (accessed 4 September 2009), doi
2. Akaike H. A new look at the statistical model identification. IEEE Transactions on Automatic Control 1974, 19:716-723.
3. Arnaiz-Villena A, Guilléna J, Ruiz-del-Vallea V, Lowy E, Zamora J, Varela P, Stefaniband D, Allende LM. Phylogeography of crossbills, bullfinches, grosbeaks, and rosefinches. CMLS Cellular and Molecular Life Sciences 2001, 58:1159-1166.
4. Arnaiz-Villena A, Moscoso J, Ruiz-del-Valle V, Gonzalez J, Reguera R, Wink M, Serrano-Vela JI. Bayesian phylogeny of Fringillinae birds: status of the singular African oriole finch Linurgus olivaceus and evolution and heterogeneity of the genus Carpodacus. Acta Zoologica Sinica 2007, 53:826-834.
5. Banks RC, Cicero C, Dunn JL, Kratter AW, Rasmussen PC, Remsen JV, Rising JD, Stotz DF. Forty-fourth supplement to the American Ornithologists' Union check-list of North American birds. The Auk 2003, 120:923-931.
6. Benz BW, Robbins MB, Peterson AT. Evolutionary history of woodpeckers and allies (Aves: Picidae): placing key taxa on the phylogenetic tree. Molecular Phylogenetics and Evolution 2006, 40:389-399.
7. Berlin S, Ellegren H. Evolutionary genetics. Clonal inheritance of avian mitochondrial DNA. Nature 2001, 413:37-38.
8. Dickinson EC. The Howard & Moore complete checklist of the birds 2003, 3rd edn, Princeton University Press, Princeton, NJ
9. Drovetski SV. Molecular phylogeny of grouse: individual and combined performance of W-linked, autosomal, and mitochondrial loci. Systematic Biology 2002, 51:930-945.
10. Drovetski SV, Zink RM, Rohwer S, Fadeev IV, Nesterov EV, Karagodin IYu, Koblik EA, Red'kin YaA. Complex biogeographic history of a Holarctic passerine. Proceedings of the Royal Society B: Biological Sciences 2004a, 21:545-551.
11. Drovetski SV, Zink RM, Fadeev IV, Nesterov EV, Koblik YeA, Red'kin YaA, Rohwer S. Mitochondrial phylogeny of Locustella and related genera. Journal of Avian Biology 2004b, 35:105-110.
12. Drovetski SV, Zink RM, Mode NA. Patchy distributions belie morphological and genetic homogeneity in rosy-finches. Molecular Phylogenetics and Evolution 2009, 50:437-445.
13. Fu Y-X. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 1997, 147:915-925.
14. Gill FB, Slikas B, Sheldon FH. Phylogeny of titmice (Paridae): II. Species relationships based on sequences of the mitochondrial cytochrome-b gene. The Auk 2005, 22:121-143.
15. Hewitt GM. Genetic consequences of climatic oscillations in the Quaternary. Philosophical Transactions of the Royal Society B: Biological Sciences 2004, 359:183-195.
16. Johnson JA, Burnham KK, Burnham WA, Mindell DP. Genetic structure among continental and island populations of gyrfalcon. Molecular Ecology 2007, 16:3145-3160.
17. Kimball RT, Braun EL, Barker FK, Bowie RCK, Braun MJ, Chojnowski JL, Hackett SJ, Han K-L, Harshman J, Heimer-Torres V, Holznagel W, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Smith JV, Witt CC, Yuri T. A well-tested set of primers to amplify regions spread across the avian genome. Molecular Phylogenetics and Evolution 2009, 50:654-660.
18. Kulikova IV, Drovetski SV, Gibson DD, Harrigan RJ, Rohwer S, Sorenson MD, Winker K, Zhuravlev YN, McCracken KG. Phylogeography of the mallard (Anas platyrhynchos): hybridization, dispersal, and lineage sorting contribute to complex geographic structure. The Auk 2005, 122:949-965.
19. Lafontaine JD, Wood DM. A zoogeographic analysis of the Noctuidae (Lepidoptera) of Beringia, and some inferences about past Beringian habitat. Memoirs of the Entomological Society of Canada 1988, 144:109-123.
20. Liebers D, de Knijff P, Helbig AJ. The herring gull complex is not a ring species. Proceedings of the Royal Society B: Biological Sciences 2004, 271:893-901.
21. Marthinsen G, Wennerberg L, Solheim R, Lifjeld JT. No phylogeographic structure in the circumpolar snowy owl (Bubo scandiacus). Conservation Genetics 2008, 10:923-933.
22. McDonald JH, Kreitman M. Adaptive evolution at the Adh locus in Drosophila. Nature 1991, 351:652-654.
23. Nei M, Kumar S. Molecular evolution and phylogenetics 2000, Oxford University Press, Oxford
24. Omland KE, Tarr CL, Boarman WI, Marzluff JM, Fleischer RC. Cryptic genetic variation and paraphyly in ravens. Proceedings of the Royal Society B: Biological Sciences 2000, 267:2475-2482.
25. Päckert M, Martens J, Kosuch J, Nazarenko AA, Veith M. Phylogenetic signal in the songs of crests and kinglets (Aves: Regulus). Evolution 2003, 57:616-629.
26. Palumbi SR, Cipriano F, Hare MP. Predicting nuclear gene coalescence from mitochondrial data: the three-times rule. Evolution 2001, 55:859-868.
27. Parchman TL, Benkman CW, Mezquida ET. Coevolution between Hispaniolan crossbills and pines: does more time allow for greater phenotypic escalation at lower latitudes? Evolution 2007, 62:2142-2153.
28. Pavlova A, Zink RM, Drovetski SV, Rohwer S. Pleistocene evolution of closely related sand martins Riparia riparia and R. diluta. Molecular Phylogenetics and Evolution 2008, 48:61-73.
29. Pereira SL, Baker AJ. Multiple gene evidence for parallel evolution and retention of ancestral morphological states in the shanks (Charadriiformes: Scolopacidae). Condor 2005, 107:514-526.
30. Peters JL, Zhuravlev YN, Fefelov I, Humphries EM, Omland KE. Multilocus phylogeography of a Holarctic duck: colonization of North America from Eurasia by gadwall (Anas strepera). Evolution 2008, 62:1469-1483.
31. Posada D, Crandall KA. Modeltest: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
32. Questiau S, Gielly L, Clouet M, Taberlet P. Phylogeographical evidence of gene flow among Common Crossbill (Loxia curvirostra, Aves, Fringillidae) populations at the continental level. Heredity 1999, 83:196-205.
33. Ramos-Onsins SE, Rozas J. Statistical properties of new neutrality tests against population growth. Molecular Biology and Evolution 2002, 19:2092-2100.
34. Riesing MJ, Kruckenhauser L, Gamauf A, Haring E. Molecular phylogeny of the genus Buteo (Aves: Accipitridae) based on mitochondrial marker sequences. Molecular Phylogenetics and Evolution 2003, 27:328-342.
35. Rodríguez F, Oliver JF, Marín A, Medina JR. The general stochastic model of nucleotide substitution. Journal of Theoretical Biology 1990, 142:485-501.
36. Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 2003, 19:2496-2497.
37. Sanmartín I, Enghoff H, Ronquist F. Patterns of animal dispersal, vicariance and diversification in the Holarctic. Biological Journal of the Linnean Society 2001, 73:345-390.
38. Seutin G, Ratcliffe LM, Boag PT. Mitochondrial DNA homogeneity in the phenotypically diverse redpoll finch complex (Aves: Carduelinae: Carduelis flammea-hornemanni). Evolution 1995, 49:962-973.
39. Stepanyan LS. Conspectus of the ornithological fauna of Russia and adjacent territories (within the borders of the USSR as a historic region) 2003, Academkniga, Moscow
40. Stephens M, Donnelly P. A comparison of Bayesian methods for haplotype reconstruction from population genotype data. American Journal of Human Genetics 2003, 73:1162-1169.
41. Stephens M, Smith NJ, Donnelly P. A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics 2001, 68:978-989.
42. Swofford DL. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0 1998, Sinauer, Sunderland, MA
43. Tavaré S. Some probabilistic and statistical problems in the analysis of DNA sequences. Some mathematical questions in biology - DNA sequence analysis 1986, 57-86. Miura RM. ed. by, pp, American Mathematical Society, Providence, RI
44. Tavares ES, Baker AJ. Single mitochondrial gene barcodes reliably identify sister-species in diverse clades of birds. BMC Evolutionary Biology 2008, 8:81.
45. Tietze DT, Martens J, Sun Y-H. Molecular phylogeny of treecreepers (Certhia) detects hidden diversity. Ibis 2006, 148:477-488.
46. Topp CM, Winker K. Genetic patterns of differentiation among five landbird species from the Queen Charlotte Islands, British Columbia. The Auk 2008, 125:461-472.
47. Voelker G, Rohwer S, Bowie RCK, Outlaw DC. Molecular systematics of a speciose, cosmopolitan songbird genus: defining the limits of, and relationships among, the Turdus thrushes. Molecular Phylogenetics and Evolution 2007, 42:422-434.
48. Wenink PW, Baker AJ, Rosner H-U, Tilanus MGJ. Global mitochondrial DNA phylogeography of Holarctic breeding dunlins (Calidris alpina). Evolution 1996, 50:313-330.
49. Yang Z. On the best evolutionary rate for phylogenetic analysis. Systematic Biology 1998, 47:125-133.
50. Zink RM, Barrowclough GF. Mitochondrial DNA under siege in avian phylogeography. Molecular Ecology 2008, 17:2107-2121.
51. Zink RM, Drovetski SV, Rohwer S. Selective neutrality of mitochondrial ND2 sequences, phylogeography and species limits in Sitta europaea. Molecular Phylogenetics and Evolution 2006a, 40:679-686.
52. Zink RM, Pavlova A, Rohwer S, Drovetski SV. Barn swallows before barns: range expansion and intercontinental colonization. Proceedings of the Royal Society B: Biological Sciences 2006b, 273:1245-1251.
53. Zink RM, Rohwer S, Drovetski SV, Blackwell-Rago RC, Farrell SL. Holarctic phylogeography and species limits of three-toed woodpeckers. Condor 2002, 104:167-170.