Phylogeny of titmice (Paridae): II. Species relationships based on sequences of the mitochondrial cytochrome-B gene

Auk

Volumn 122, Issue 1, 2005, Pages 121-143

  Gill, Frank B ^a,d   Slikas, Beth ^b   Sheldon, Frederick H ^c  

^a ACADEMY OF NATURAL SCIENCES OF DREXEL UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c LOUISIANA STATE UNIVERSITY   (United States)

^d NONE   (United States)

Author keywords

Biogeography; Cytochrome b; DNA sequences; Morphological stasis; Paridae; Phylogeny; Titmice

Indexed keywords

BIOGEOGRAPHY; MITOCHONDRIAL DNA; PHYLOGENY;

ASIA; CHINA; EASTERN HEMISPHERE; EURASIA; FAR EAST; QINGHAI-XIZANG PLATEAU; WORLD;

AVES; BAEOLOPHUS; LOPHOPHANES; MELANOCHLORA; MYA; PARIDAE; PARUS LUGUBRIS; PARUS VARIUS; POECILE SUPERCILIOSUS; PSEUDOPODOCES; PSEUDOPODOCES HUMILIS; SYLVIPARUS;

EID: 20444362435     PISSN: 00048038     EISSN: None     Source Type: Journal    
DOI: 10.1642/0004-8038(2005)122[0121:POTPIS]2.0.CO;2     Document Type: Article

References (67)

1. AMERICAN ORNITHOLOGISTS' UNION. 1998. Check-list of North American Birds, 7th ed. American Ornithologists' Union, Washington, D.C.
2. AMERICAN ORNITHOLOGISTS' UNION. 2000. Forty-second supplement to the American Ornithologists' Union Check-list of North American Birds. Auk 117:847-858.
3. AMERICAN ORNITHOLOGISTS' UNION. 2002. Forty-third supplement to the American Ornithologist's Union Check-list of North American Birds. Auk 119:897-906.
4. ARBOGAST, B. S., AND J. B. SLOWINSKI. 1998. Pleistocene speciation and the mitochondrial DNA clock. Science 282:1955a.
5. BLOOMER, P., AND T. M. CROWE. 1999. Francolin phylogenetics: Molecular, morphobehavioral, and combined evidence. Molecular and Phlogenetic Evolution 9:236-254.
6. BORECKY, S. R. 1978. Evidence for the removal of Pseudopodoces humilis from the Corvidae. Bulletin of the British Ornithologists' Club 98:36-37.
7. BREWER, R. 1963. Ecological and reproductive relationships of Black-capped and Carolina chickadees. Auk 80:9-47.
8. CICERO, C. 1996. Sibling Species of Titmice in the Parus inornatus Complex (Aves: Paridae). University of California Publications, no. 128.
9. CRAMP, S., AND C. M. PERRINS. 1993. Flycatchers to shrikes. Pages 145-281 in Handbook of the Birds of Europe, the Middle East and North Africa: The Birds of the Western Palearctic, vol. VII. Oxford University Press, New York.
10. DESJARDINS, P., AND R. MORAIS. 1990. Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates. Journal of Molecular Biology 212:599-634.
11. DICKINSON, E. C. 2003. The Howard and Moore Complete Checklist of the Birds of the World. Princeton University Press, Princeton, New Jersey.
12. DIXON, K. L. 1978. A distributional history of the Black-crested Titmouse. American Midland Naturalist 100:29-42.
13. ECK, S. 1980. Intraspez Evolution bei Graumesisen (Parus, Subgenus Poedle). Zoologische Abhandlungen Staatliches Museum für Tierkkunde, Dresden 36:135-219.
14. ECK, S. 1988. Gesichtspunkte zur Art-Systematik der Meisen (Paridae). Zoologische Abhandlungen Staatliches Museum für Tierkkunde, Dresden 43:101-134.
15. ECK, S. 1994. Ist die bisheriger Systematik der Graumeisen (Parus, Subgenus Poecile) nach "uber 160 Jahren am Ende?" Anzeiger des Vereins Thüringer Ornithologen 2:109-115.
16. EDWARDS, S. V., P. ARCTANDER, AND A. C. WILSON. 1991. Mitochondrial resolution of a deep branch in the genealogical tree for perching birds. Proceedings of the Royal Society of London, Series B 243:99-107.
17. EKMAN, J. 1989. Ecology of non-breeding social systems of Parus. Wilson Bulletin 101:263-288.
18. FELSENSTEIN, J. 1988. Phylogenies from molecular sequences: Inference and reliability. Annual Review of Genetics 22:521-565.
19. GILL, F. B., D. H. FUNK, AND B. SILVERIN. 1989. Protein relationships among titmice (Parus). Wilson Bulletin 101:182-197.
20. GILL, F. B., A. MOSTROM, AND A. L. MACK. 1993. Speciation in North American chickadees: I. Patterns of mtDNA genetic divergence. Evolution 47:193-212.
21. GILL, F. B., AND B. SLIKAS. 1992. Patterns of mitochondrial DNA divergence in North American crested titmice. Condor 94:20-28.
22. GILL, F. B., B. SLIKAS, AND D. AGRO. 1999. Speciation in North American chickadees: II. Geography of mtDNA haplotypes in Parus carolinensis. Auk 116:274-277.
23. GRIFFITHS, C. S. 1997. Correlation of functional domains and rates of nucleotide substitution in cytochrome b. Molecular and Phylogenetic Evolution 7:352-365.
24. HACKETT, S. J. 1996. Molecular phylogenetics and biogeography of tanagers in the genus Ramphocelus (Aves). Molecular and Phylogenetic Evolution 5:368-382.
25. HAILMAN, J. 1989. The organization of major vocalizations in the Paridae. Wilson Bulletin 101:305-343
26. HARRAP, S., AND D. QUINN. 1995. Nuthatches, Creepers and Titmice. Princeton University Press, Princeton, New Jersey.
27. HELLMAYR, C. E. 1903. Paridae, Sittidae, and Certhiidae. Das Tierreich, No. 18. Verlag R. Friedlander und Sohn, Berlin.
28. HELM-BYCHOWSKI, K., AND J. CRACRAFT. 1993. Recovering phylogenetic signal from DNA sequences: Relationships within the corvine assemblage (class Aves) as inferred from complete sequences of the mitochondrial DNA cytochrome-b gene. Molecular Biology and Evolution 10:1196-1214.
29. HOPE, S. 1989. Phylogeny of the avian family Corvidae. Ph.D. dissertation, City University of New York.
30. HUELSENBECK, J. P., AND F. RONQUIST. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
31. IRWIN, D. M., T. D. KOCHER, AND A. C. WILSON. 1991. Evolution of the cytochrome b gene of mammals. Journal of Molecular Evolution 32:128-144.
32. JAMES, H. F., P. G. P. ERICSON, B. SLIKAS, F. LEI, F. B. GILL, AND S. L. OLSON. 2003. Pseudopodoces humilis: A misclassified terrestrial tit (Aves: Paridae) of the Tibetan Plateau: Evolutionary consequences of shifting adaptive zones. Ibis 145:185-202.
33. JOHNS, G. C., AND J. C. AVISE. 1998. A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene. Molecular Biology and Evolution 15:1481-1490.
34. JOSEPH, L., B. SLIKAS, K. RANKIN-BARANSKY, B. BAZARTSEREN, D. ALPERS, AND A. E. GILBERT. 1999. DNA evidence concerning the identities of Crax viridirostris Sclater 1875 and C. estudilloi Allen 1977. Ornitologia Neotropical 10:129-144.
35. KOCHER, T. D., W. K. THOMAS, A. MEYER, S. V. EDWARDS, S. PAABO, F. X. VILLABLANCA, AND A. C. WILSON. 1989. Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences USA 86:6196-200.
36. KORNEGAY, J. R., T. D. KOCHER, L. A. WILLIAMS, AND A. C. WILSON. 1993. Pathways of lysozyme evolution inferred from the sequences of cytochrome b in birds. Journal of Molecular Evolution 37:367-379.
37. KVIST, L., M. RUOKONEN, M. ORELL, AND J. LUMME. 1996. Evolutionary patterns and phylogeny of tits and chickadees (genus Parus) based on the sequence of the mitochondrial cytochrome b gene. Ornis Fennica 73:145-156.
38. LACK, D. 1969. Tit niches in two worlds; or homage to Evelyn Hutchinson. American Naturalist 103:43-49.
39. LACK, D. 1971. Ecological Isolation in Birds. Harvard University Press, Cambridge, Massachusetts.
40. LANYON, S. M. 1988. The stochastic mode of evolution: What consequences for systematic investigations? Auk 105:565-573.
41. LÖHRL, H. 1988. On the taxonomy, breeding biology, and molting of the Yellow-bellied Tit, Parus venustulus Swinhoe, compared to Sylviparus modestus and Parus ater. Bonner Zoologische Beiträge 39:7-17.
42. MADDISON, D. R., AND W. P. MADDISON. 2000. MACCLADE 4: Analysis of Phylogeny and Character Evolution, version 4.0. Sinauer Associates, Sunderland, Massachusetts.
43. MARTENS, J., AND S. ECK. 1995. Towards an ornithology of the Himalayas: Ecology and vocalizations of Nepal birds. Bonner Zoologigische Monographien, no. 38.
44. MAYR, E., AND L. L. SHORT. 1970. Species taxa of North American birds: A contribution to comparative systematics. Publications of the Nuttall Ornithological Club, no. 9.
45. MCCALLUM, D. A., F. B. GILL, AND S. L. L. GAUNT. 2001. Community assembly patterns of parids along an elevational gradient in western China. Wilson Bulletin 113:53-64.
46. MORENO, E. 1985. Clave osteologica para la identificacion de los Passeriformes Ibericos. I. Aegithalidae, Remizidae, Paridae, Emberizidae, Passeridae, Fringillidae, Alaudidae. Ardeola 32:295-377.
47. POSADA, D., AND K. A. CRANDALL. 1998. MODELTEST: Testing the model of DNA subsitution. Bioinformatics 14:817-818.
48. SANGER, F., S. NICKLEN, AND A. R. COULSEN. 1977. DNA sequencing with chain terminating inhibitors. Proceedings of the National Academy of Sciences USA 74:5463-5467.
49. SCHÄFER, E. 1938. Ornithologische Ergebnisse zweier Forshungsreisen nach Tibet. Journal für Ornithologie 86(Sonderheft):205-207.
50. SHELDON, F. H., AND A. H. BLEDSOE. 1989. Indexes to the reassociation and stability of solution DNA hybrids. Journal of Molecular Evolution 29:328-343.
51. SHELDON, F. H., AND F. B. GILL. 1996. A reconsideration of songbird phylogeny, with emphasis on the evolution of titmice and their sylvioid relatives. Systematic Biology 45:473-495.
52. SHELDON, F. H., C. E. JONES, AND K. G. MCCRACKEN. 2000. Relative patterns and rates of evolution in heron nuclear and mitochondrial DNA. Molecular Biology and Evolution 17:437-450.
53. SHELDON, F. H., B. SLIKAS, M. KINNARNEY, F. B. GILL, E. ZHAO, AND B. SILVERIN. 1992. DNA-DNA hybridization evidence of phylogenetic evidence relationships among major lineages of Parus. Auk 109:173-185.
54. SHELDON, F. H., AND L. A. WHITTINGHAM. 1997. Phylogeny in studies of bird ecology, behavior, and morphology. Pages 279-299 in Avian Molecular Evolution and Systematics (D. Mindell, Ed.). Academic Press, New York.
55. SHELDON, F. H., L. A. WHITTINGHAM, AND D. W. WINKLER. 1999. A comparison of cytochrome b and DNA hybridization data bearing on the phylogeny of swallows (Aves: Hirundinidae). Molecular Phylogenetics and Evolution 11:320-331.
56. SHELDON, F. H., AND D. W. WINKLER. 1993. Intergeneric phylogenetic relationships of swallows estimated by DNA-DNA hybridization. Auk 110:798-824.
57. SHERRY, D. F. 1992. Memory, the hippocampus, and natural selection studies of food-storing birds. Pages 521-532 in Neuropsychology of Memory, 2nd ed. (L. R. Squire and N. Butters, Eds.). Guilford Press, New York.
58. SIBLEY, C. G., AND B. L. MONROE, JR. 1990. Distribution and Taxonomy of Birds of the World. Yale University Press, New Haven, Connecticut.
59. SLIKAS, B. 1997. Phylogeny of the avian family Ciconiidae (storks) based on cytochrome b sequences and DNA-DNA hybridization distances. Molecular Phylogenetics and Evolution 8:275-300.
60. SLIKAS, B., I. JONES, S. DERRICKSON, AND R. FLEISCHER. 2000. Phylogenetic relationships of Micronesian White-Eyes based on mitochondrial sequence data. Auk 117:355-365.
61. SLIKAS, B., F. H. SHELDON, AND F. B. GILL. 1996. Phylogeny of titmice (Paridae): I. Estimate of relationships among subgenera based on DNA-DNA hybridization. Journal of Avian Biology 27:70-82.
62. SNOW, D. 1956. The specific status of the Willow Tit. Bulletin of the British Ornithologists' Club 76:29-31.
63. SWOFFORD, D. L. 2002. PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods), version 4. Sinauer Associates, Sunderland, Massachusetts.
64. SWOFFORD, D. L., G. J. OLSEN, P. J. WADDELL, AND D. M. HILLIS. 1996. Phylogenetic inference. Pages 407-514 in Molecular Evolution (D. M. Hillis, C. Moritz, and B. K. Mable, Eds.). Sinauer Associates, Sunderland, Massachusetts.
65. THIELCKE, G. 1968. Gemeinsames der Gattung Parus. Ein bioakustischer Beitrag zur Systematik. Beiheft Vogelwelt 1:147-164.
66. VOELKER, G. 1999. Molecular evolutionary relationships in the avian genus Anthus (Pipits: Motacillidae). Molecular Phylogenetics and Evolution 11:84-94.
67. 1. Nature 392:677-684.