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Volumn 31, Issue 4, 2007, Pages 246-256

A combined approach for the classification of G protein-coupled receptors and its application to detect GPCR splice variants

Author keywords

G protein coupled receptor; Physicochemical property; Profile hidden Markov model; Splice variant; Transmembrane domain

Indexed keywords

CELLULAR SIGNALING PATHWAYS; FINGERPRINT METHOD; G PROTEIN-COUPLED RECEPTORS (GPCRS); SPLICE VARIANTS; SURFACE RECEPTORS;

EID: 34447643391     PISSN: 14769271     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compbiolchem.2007.05.002     Document Type: Article
Times cited : (15)

References (26)
  • 1
    • 0027506471 scopus 로고
    • The probable arrangement of the helices in G protein-coupled receptors
    • Baldwin J.M. The probable arrangement of the helices in G protein-coupled receptors. EMBO J. 12 (1993) 1693-1703
    • (1993) EMBO J. , vol.12 , pp. 1693-1703
    • Baldwin, J.M.1
  • 2
    • 0028227013 scopus 로고
    • Structure and function of receptors coupled to G proteins
    • Baldwin J.M. Structure and function of receptors coupled to G proteins. Curr. Opin. Cell Biol. 6 (1994) 180-190
    • (1994) Curr. Opin. Cell Biol. , vol.6 , pp. 180-190
    • Baldwin, J.M.1
  • 3
    • 23144467078 scopus 로고    scopus 로고
    • GPCRsclass: a web tool for the classification of amine type of G protein-coupled receptors
    • Bhasin M., and Raghava G.P.S. GPCRsclass: a web tool for the classification of amine type of G protein-coupled receptors. Nucleic Acids Res. 33 (2005) W143-W147
    • (2005) Nucleic Acids Res. , vol.33
    • Bhasin, M.1    Raghava, G.P.S.2
  • 5
    • 0037255072 scopus 로고    scopus 로고
    • The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
    • Boeckmann B., et al. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res. 31 (2003) 365-370
    • (2003) Nucleic Acids Res. , vol.31 , pp. 365-370
    • Boeckmann, B.1
  • 6
    • 0030274647 scopus 로고    scopus 로고
    • Genomic sciences and the medicine of tomorrow
    • Drews J. Genomic sciences and the medicine of tomorrow. Nat. Biotechnol. 14 (1996) 1516-1518
    • (1996) Nat. Biotechnol. , vol.14 , pp. 1516-1518
    • Drews, J.1
  • 7
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy S.R. Profile hidden Markov models. Bioinformatics 14 (1998) 755-763
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 8
    • 0036762915 scopus 로고    scopus 로고
    • A study on the correlation of G-protein coupled receptor types with amino acid composition
    • Elrod D.W., and Chou K.C. A study on the correlation of G-protein coupled receptor types with amino acid composition. Protein Eng. 15 (2002) 713-715
    • (2002) Protein Eng. , vol.15 , pp. 713-715
    • Elrod, D.W.1    Chou, K.C.2
  • 9
    • 0037385599 scopus 로고    scopus 로고
    • Bioinformatics approaches for the classification of G-protein-coupled receptors
    • Gaulton A., and Attwood T.K. Bioinformatics approaches for the classification of G-protein-coupled receptors. Curr. Opin. Pharmacol. 3 (2003) 114-120
    • (2003) Curr. Opin. Pharmacol. , vol.3 , pp. 114-120
    • Gaulton, A.1    Attwood, T.K.2
  • 10
    • 0034464742 scopus 로고    scopus 로고
    • Uncovering molecular mechanisms involved in activation of G protein-coupled receptors
    • Gether U. Uncovering molecular mechanisms involved in activation of G protein-coupled receptors. Endocr. Rev. 21 (2000) 90-113
    • (2000) Endocr. Rev. , vol.21 , pp. 90-113
    • Gether, U.1
  • 11
    • 0016197604 scopus 로고
    • Amino acid difference formula to help explain protein evolution
    • Grantham R. Amino acid difference formula to help explain protein evolution. Science 185 (1974) 862-864
    • (1974) Science , vol.185 , pp. 862-864
    • Grantham, R.1
  • 14
    • 9544225087 scopus 로고    scopus 로고
    • Classifying G-protein coupled receptors with bagging classification tree
    • Huang Y., Cai J., Ji L., and Li Y. Classifying G-protein coupled receptors with bagging classification tree. Comput. Biol. Chem. 28 (2004) 275-280
    • (2004) Comput. Biol. Chem. , vol.28 , pp. 275-280
    • Huang, Y.1    Cai, J.2    Ji, L.3    Li, Y.4
  • 15
    • 0842286957 scopus 로고    scopus 로고
    • Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern
    • Inoue Y., Ikeda M., and Shimizu T. Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern. Comput. Biol. Chem. 28 (2004) 39-49
    • (2004) Comput. Biol. Chem. , vol.28 , pp. 39-49
    • Inoue, Y.1    Ikeda, M.2    Shimizu, T.3
  • 16
    • 0036166451 scopus 로고    scopus 로고
    • Classifying G-protein coupled receptors with support vector machines
    • Karchin R., Karplus K., and Haussler D. Classifying G-protein coupled receptors with support vector machines. Bioinformatics 18 (2002) 147-159
    • (2002) Bioinformatics , vol.18 , pp. 147-159
    • Karchin, R.1    Karplus, K.2    Haussler, D.3
  • 18
    • 0033665668 scopus 로고    scopus 로고
    • Identification of novel multi-transmembrane proteins from genomic databases using quasi-periodic structural properties
    • Kim J., Moriyama E.N., Warr C.G., Clyne P.J., and Carlson R. Identification of novel multi-transmembrane proteins from genomic databases using quasi-periodic structural properties. Bioinformatics 16 (2000) 767-775
    • (2000) Bioinformatics , vol.16 , pp. 767-775
    • Kim, J.1    Moriyama, E.N.2    Warr, C.G.3    Clyne, P.J.4    Carlson, R.5
  • 19
    • 0033771402 scopus 로고    scopus 로고
    • The superfamily of heptahelical receptors
    • Lefkowitz R.J. The superfamily of heptahelical receptors. Nat. Cell Biol. 2 (2000) E133-E136
    • (2000) Nat. Cell Biol. , vol.2
    • Lefkowitz, R.J.1
  • 20
    • 0035398487 scopus 로고    scopus 로고
    • G-protein-coupled receptors and signaling networks: emerging paradigms
    • Marinissen M.J., and Gutkind J.S. G-protein-coupled receptors and signaling networks: emerging paradigms. Trends Pharmacol. Sci. 22 (2001) 368-376
    • (2001) Trends Pharmacol. Sci. , vol.22 , pp. 368-376
    • Marinissen, M.J.1    Gutkind, J.S.2
  • 21
    • 0016772212 scopus 로고
    • Comparison of the predicted and observed secondary structure of T4 phage lysozyme
    • Matthews B.W. Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim. Biophys. Acta 405 (1975) 442-451
    • (1975) Biochim. Biophys. Acta , vol.405 , pp. 442-451
    • Matthews, B.W.1
  • 22
    • 0001229722 scopus 로고    scopus 로고
    • Splice variants of G protein-coupled receptors
    • Minneman K.P. Splice variants of G protein-coupled receptors. Mol. Interv. 1 (2001) 108-116
    • (2001) Mol. Interv. , vol.1 , pp. 108-116
    • Minneman, K.P.1
  • 23
    • 33845885526 scopus 로고    scopus 로고
    • TISA: tissue-specific alternative splicing in human and mouse genes
    • Noh S.J., Lee K., Paik H., and Hur C.G. TISA: tissue-specific alternative splicing in human and mouse genes. DNA Res. 13 (2006) 229-243
    • (2006) DNA Res. , vol.13 , pp. 229-243
    • Noh, S.J.1    Lee, K.2    Paik, H.3    Hur, C.G.4
  • 24
    • 0345415722 scopus 로고    scopus 로고
    • A novel method for GPCR recognition and family classification from sequence alone using signatures derived from profile hidden Markov models
    • Papasaikas P.K., Bagos P.G., Litou Z.I., and Hamodrakas S.J. A novel method for GPCR recognition and family classification from sequence alone using signatures derived from profile hidden Markov models. SAR QSAR Environ. Res. 14 (2003) 413-420
    • (2003) SAR QSAR Environ. Res. , vol.14 , pp. 413-420
    • Papasaikas, P.K.1    Bagos, P.G.2    Litou, Z.I.3    Hamodrakas, S.J.4
  • 25
    • 29144515403 scopus 로고    scopus 로고
    • Families of membranous proteins can be characterized by the amino acid composition of their transmembrane domains
    • Sadka T., and Linial M. Families of membranous proteins can be characterized by the amino acid composition of their transmembrane domains. Bioinformatics 21 (2005) i378-i386
    • (2005) Bioinformatics , vol.21
    • Sadka, T.1    Linial, M.2
  • 26
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.