-
1
-
-
74249107702
-
Assessment of CASP8 structure predictions for template free targets
-
Ben-David M., Noivirt-Brik O., Paz A., Prilusky J., Sussman J.L., Levy Y. Assessment of CASP8 structure predictions for template free targets. Proteins 2009, 77:50-65.
-
(2009)
Proteins
, vol.77
, pp. 50-65
-
-
Ben-David, M.1
Noivirt-Brik, O.2
Paz, A.3
Prilusky, J.4
Sussman, J.L.5
Levy, Y.6
-
3
-
-
67849106670
-
Amyloid-β protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer's disease
-
Bernstein S.L., Dupuis N.F., Lazo N.D., Wyttenbach T., Condron M.M., Bitan G., et al. Amyloid-β protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer's disease. Nat. Chem. 2009, 1:326-331.
-
(2009)
Nat. Chem.
, vol.1
, pp. 326-331
-
-
Bernstein, S.L.1
Dupuis, N.F.2
Lazo, N.D.3
Wyttenbach, T.4
Condron, M.M.5
Bitan, G.6
-
4
-
-
57749208693
-
Unfolding and folding kinetics of amyotrophic lateral sclerosis-associated mutant Cu,Zn superoxide dismutases
-
Rumfeldt J.A.O., Lepock J.R., Meiering E.M. Unfolding and folding kinetics of amyotrophic lateral sclerosis-associated mutant Cu,Zn superoxide dismutases. J. Mol. Biol. 2009, 385:278-298.
-
(2009)
J. Mol. Biol.
, vol.385
, pp. 278-298
-
-
Rumfeldt, J.A.O.1
Lepock, J.R.2
Meiering, E.M.3
-
5
-
-
33845622937
-
The folding pathway of T4 lysozyme: the high resolution structure and folding of a hidden intermediate
-
Kato H., Feng H., Bai Y. The folding pathway of T4 lysozyme: the high resolution structure and folding of a hidden intermediate. J. Mol. Biol. 2007, 365:870-880.
-
(2007)
J. Mol. Biol.
, vol.365
, pp. 870-880
-
-
Kato, H.1
Feng, H.2
Bai, Y.3
-
6
-
-
0035895436
-
Apparent two-state tendamistat folding is a sequential process along a defined route
-
Bachmann A., Kiefhaber T. Apparent two-state tendamistat folding is a sequential process along a defined route. J. Mol. Biol. 2001, 306:375-386.
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 375-386
-
-
Bachmann, A.1
Kiefhaber, T.2
-
7
-
-
0038329308
-
Folding at the speed limit
-
Yang W.Y., Gruebele M. Folding at the speed limit. Nature 2003, 423:193-197.
-
(2003)
Nature
, vol.423
, pp. 193-197
-
-
Yang, W.Y.1
Gruebele, M.2
-
8
-
-
0031932824
-
Structural and dynamic characterization of partially folded states of apomyoglobin and implications for protein folding
-
Eliezer D., Yao J., Dyson H.J., Wright P.E. Structural and dynamic characterization of partially folded states of apomyoglobin and implications for protein folding. Nat. Struct. Biol. 1998, 5:148-155.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 148-155
-
-
Eliezer, D.1
Yao, J.2
Dyson, H.J.3
Wright, P.E.4
-
9
-
-
0030961780
-
The kinetic folding intermediate of ribonuclease H resembles the acid molten globule and partially unfolded molecules under native conditions
-
Raschke T.M., Marqusee S. The kinetic folding intermediate of ribonuclease H resembles the acid molten globule and partially unfolded molecules under native conditions. Nat. Struct. Biol. 1997, 4:298-304.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 298-304
-
-
Raschke, T.M.1
Marqusee, S.2
-
10
-
-
84889808538
-
Fast relaxation methods
-
Wiley, New York, NY, J. Buchner, T. Kiefhaber (Eds.)
-
Gruebele M. Fast relaxation methods. Protein Folding Handbook 2005, Vol. 1:454-490. Wiley, New York, NY. J. Buchner, T. Kiefhaber (Eds.).
-
(2005)
Protein Folding Handbook
, vol.1
, pp. 454-490
-
-
Gruebele, M.1
-
11
-
-
34249691304
-
Identification and characterization of protein folding intermediates
-
Gianni S., Ivarsson Y., Jemth P., Brunori M., Travaglini-Allocatelli C. Identification and characterization of protein folding intermediates. Biophys. Chem. 2007, 128:105-113.
-
(2007)
Biophys. Chem.
, vol.128
, pp. 105-113
-
-
Gianni, S.1
Ivarsson, Y.2
Jemth, P.3
Brunori, M.4
Travaglini-Allocatelli, C.5
-
12
-
-
33644541811
-
On the precision of experimentally determined protein folding rates and ?-values
-
De Los Rios M.A., Muralidhara B.K., Wildes D., Sosnick T.R., Marqusee S., Wittung-Stafshede P., et al. On the precision of experimentally determined protein folding rates and ?-values. Protein Sci. 2006, 15:553-563.
-
(2006)
Protein Sci.
, vol.15
, pp. 553-563
-
-
De Los Rios, M.A.1
Muralidhara, B.K.2
Wildes, D.3
Sosnick, T.R.4
Marqusee, S.5
Wittung-Stafshede, P.6
-
13
-
-
0345304461
-
Origin of unusual Π-values in protein folding: evidence against specific nucleation sites
-
Sanchez I.E., Kiefhaber T. Origin of unusual Π-values in protein folding: evidence against specific nucleation sites. J. Mol. Biol. 2003, 334:1077-1085.
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 1077-1085
-
-
Sanchez, I.E.1
Kiefhaber, T.2
-
14
-
-
5144225084
-
Relationship of Leffler (Bronsted) γ values and protein folding Π values to position of transition-state structures on reaction coordinates
-
Fersht A.R. Relationship of Leffler (Bronsted) γ values and protein folding Π values to position of transition-state structures on reaction coordinates. Proc. Natl Acad. Sci. USA 2004, 101:14338-14342.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 14338-14342
-
-
Fersht, A.R.1
-
15
-
-
0542421561
-
Kinetic and structural analysis of submillisecond folding events in cytochrome c
-
Shastry M.C.R., Sauder J.M., Roder H. Kinetic and structural analysis of submillisecond folding events in cytochrome c. Acc. Chem. Res. 1998, 31:717-725.
-
(1998)
Acc. Chem. Res.
, vol.31
, pp. 717-725
-
-
Shastry, M.C.R.1
Sauder, J.M.2
Roder, H.3
-
16
-
-
0000519105
-
Cytochrome c folding and unfolding: a biphasic mechanism
-
Yeh S.-R., Han S., Rousseau D.L. Cytochrome c folding and unfolding: a biphasic mechanism. Acc. Chem. Res. 1998, 31:727-736.
-
(1998)
Acc. Chem. Res.
, vol.31
, pp. 727-736
-
-
Yeh, S.-R.1
Han, S.2
Rousseau, D.L.3
-
17
-
-
0000108661
-
Fast and slow folding in cytochrome c
-
Englander S.W., Sosnick T.R., Mayne L.C., Shtilterman M., Qi P.X., Bai Y. Fast and slow folding in cytochrome c. Acc. Chem. Res. 1998, 31:737-744.
-
(1998)
Acc. Chem. Res.
, vol.31
, pp. 737-744
-
-
Englander, S.W.1
Sosnick, T.R.2
Mayne, L.C.3
Shtilterman, M.4
Qi, P.X.5
Bai, Y.6
-
18
-
-
0000122609
-
Protein folding triggered by electron transfer
-
Telford J.R., Wittung-Stafshede P., Gray H.B., Winkler J.R. Protein folding triggered by electron transfer. Acc. Chem. Res. 1998, 31:755-763.
-
(1998)
Acc. Chem. Res.
, vol.31
, pp. 755-763
-
-
Telford, J.R.1
Wittung-Stafshede, P.2
Gray, H.B.3
Winkler, J.R.4
-
19
-
-
0025007598
-
High-resolution three-dimensional structure of horse heart cytochrome c
-
Bushnell G.W., Louie G.V., Brayer G.D. High-resolution three-dimensional structure of horse heart cytochrome c. J. Mol. Biol. 1990, 214:585-595.
-
(1990)
J. Mol. Biol.
, vol.214
, pp. 585-595
-
-
Bushnell, G.W.1
Louie, G.V.2
Brayer, G.D.3
-
20
-
-
7444256720
-
Photodissociation of heme distal methionine in ferrous cytochrome c revealed by subpicosecond time-resolved resonance Raman spectroscopy
-
Cianetti S., Negrerie S., Vos M.H., Martin J.-L., Kruglik S.G. Photodissociation of heme distal methionine in ferrous cytochrome c revealed by subpicosecond time-resolved resonance Raman spectroscopy. J. Am. Chem. Soc. 2004, 126:13932-13933.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 13932-13933
-
-
Cianetti, S.1
Negrerie, S.2
Vos, M.H.3
Martin, J.-L.4
Kruglik, S.G.5
-
21
-
-
1842531459
-
Cytochrome c folding dynamics
-
Winkler J.R. Cytochrome c folding dynamics. Curr. Opin. Chem. Biol. 2004, 8:169-174.
-
(2004)
Curr. Opin. Chem. Biol.
, vol.8
, pp. 169-174
-
-
Winkler, J.R.1
-
22
-
-
0015863377
-
Thermodynamic studies of the opening of the heme crevice of ferricytochrome c
-
Kaminsky L.S., Miller V.J., Davison A.J. Thermodynamic studies of the opening of the heme crevice of ferricytochrome c. Biochemistry 1973, 12:2215-2221.
-
(1973)
Biochemistry
, vol.12
, pp. 2215-2221
-
-
Kaminsky, L.S.1
Miller, V.J.2
Davison, A.J.3
-
23
-
-
0017027586
-
Ferricytochrome c chain folding measured by the energy transfer of tryptophan 59 to the heme group
-
Tsong T.Y. Ferricytochrome c chain folding measured by the energy transfer of tryptophan 59 to the heme group. Biochemistry 1976, 15:5467-5473.
-
(1976)
Biochemistry
, vol.15
, pp. 5467-5473
-
-
Tsong, T.Y.1
-
24
-
-
7444252271
-
Modulation of the folding energy landscape of cytochrome c with salt
-
Zhong S., Rousseau D.L., Yeh S.-R. Modulation of the folding energy landscape of cytochrome c with salt. J. Am. Chem. Soc. 2004, 126:13934-13935.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 13934-13935
-
-
Zhong, S.1
Rousseau, D.L.2
Yeh, S.-R.3
-
25
-
-
0032508940
-
Alkaline conformational transitions of ferricytochrome c studied by resonance Raman spectroscopy
-
Döpner S., Hildebrandt P., Rosell F.I., Mauk A.G. Alkaline conformational transitions of ferricytochrome c studied by resonance Raman spectroscopy. J. Am. Chem. Soc. 1998, 120:11246-11255.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 11246-11255
-
-
Döpner, S.1
Hildebrandt, P.2
Rosell, F.I.3
Mauk, A.G.4
-
26
-
-
0034121798
-
Stepwise formation of γ-helices during cytochrome c folding
-
Akiyama S., Takashi S., Ishimori K., Morishima I. Stepwise formation of γ-helices during cytochrome c folding. Nat. Struct. Biol. 2000, 6:514-520.
-
(2000)
Nat. Struct. Biol.
, vol.6
, pp. 514-520
-
-
Akiyama, S.1
Takashi, S.2
Ishimori, K.3
Morishima, I.4
-
27
-
-
32344442512
-
Molecular dimensions and their distributions in early folding intermediates
-
Bilsel O., Matthews C.R. Molecular dimensions and their distributions in early folding intermediates. Curr. Opin. Struct. Biol. 2006, 16:86-93.
-
(2006)
Curr. Opin. Struct. Biol.
, vol.16
, pp. 86-93
-
-
Bilsel, O.1
Matthews, C.R.2
-
28
-
-
0037022327
-
Conformational landscape of cytochrome c folding studied by microsecond-resolved small-angle X-ray scattering
-
Akiyama S., Takahashi S., Kimura T., Ishimori K., Morishima I., Nishikawa Y., Fujisawa T. Conformational landscape of cytochrome c folding studied by microsecond-resolved small-angle X-ray scattering. Proc. Natl Acad. Sci. USA 2002, 99:1329-1334.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 1329-1334
-
-
Akiyama, S.1
Takahashi, S.2
Kimura, T.3
Ishimori, K.4
Morishima, I.5
Nishikawa, Y.6
Fujisawa, T.7
-
29
-
-
0031007307
-
Cytochrome c folding kinetics studied by time-resolved electrospray ionization mass spectrometry
-
Konermann L., Collings B.A., Douglas D.J. Cytochrome c folding kinetics studied by time-resolved electrospray ionization mass spectrometry. Biochemistry 1997, 36:5554-5559.
-
(1997)
Biochemistry
, vol.36
, pp. 5554-5559
-
-
Konermann, L.1
Collings, B.A.2
Douglas, D.J.3
-
30
-
-
0036177471
-
Detecting equilibrium cytochrome c folding intermediates by electrospray ionization mass spectrometry: two partially folded forms populate the molten globule state
-
Grandori R. Detecting equilibrium cytochrome c folding intermediates by electrospray ionization mass spectrometry: two partially folded forms populate the molten globule state. Protein Sci. 2002, 11:453-458.
-
(2002)
Protein Sci.
, vol.11
, pp. 453-458
-
-
Grandori, R.1
-
32
-
-
0242578172
-
Intimate view of a kinetic protein folding intermediate: residue-resolved structure, interactions, stability, folding and unfolding rates, homogeneity
-
Krishna M.M.G., Lin Y., Mayne L., Englander S.W. Intimate view of a kinetic protein folding intermediate: residue-resolved structure, interactions, stability, folding and unfolding rates, homogeneity. J. Mol. Biol. 2003, 334:501-513.
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 501-513
-
-
Krishna, M.M.G.1
Lin, Y.2
Mayne, L.3
Englander, S.W.4
-
33
-
-
0023758305
-
NMR evidence for an early framework intermediate on the folding pathway of ribonuclease A
-
Udgaonkar J.B., Baldwin R.L. NMR evidence for an early framework intermediate on the folding pathway of ribonuclease A. Nature 1988, 335:694-699.
-
(1988)
Nature
, vol.335
, pp. 694-699
-
-
Udgaonkar, J.B.1
Baldwin, R.L.2
-
34
-
-
0023705432
-
Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR
-
Roder H., Elöve G.A., Englander S.W. Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR. Nature 1988, 335:700-704.
-
(1988)
Nature
, vol.335
, pp. 700-704
-
-
Roder, H.1
Elöve, G.A.2
Englander, S.W.3
-
35
-
-
52949091532
-
Hierarchical folding mechanism of apomyoglobin revealed by ultra-fast H/D exchange coupled with 2D NMR
-
Uzawa T., Nishimura C., Akiyama S., Ishimori K., Takahashi S., Dyson H.J., Wright P.E. Hierarchical folding mechanism of apomyoglobin revealed by ultra-fast H/D exchange coupled with 2D NMR. Proc. Natl Acad. Sci. USA 2008, 105:13859-13864.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 13859-13864
-
-
Uzawa, T.1
Nishimura, C.2
Akiyama, S.3
Ishimori, K.4
Takahashi, S.5
Dyson, H.J.6
Wright, P.E.7
-
36
-
-
0030780768
-
Kinetics of cytochrome c folding examined by hydrogen exchange and mass spectrometry
-
Yang H., Smith D.L. Kinetics of cytochrome c folding examined by hydrogen exchange and mass spectrometry. Biochemistry 1997, 36:14992-14999.
-
(1997)
Biochemistry
, vol.36
, pp. 14992-14999
-
-
Yang, H.1
Smith, D.L.2
-
37
-
-
0038271924
-
Protein folding kinetics and mechanisms studied by pulse-labeling and mass spectrometry
-
Konermann L., Simmons D.A. Protein folding kinetics and mechanisms studied by pulse-labeling and mass spectrometry. Mass Spectrom. Rev. 2003, 22:1-26.
-
(2003)
Mass Spectrom. Rev.
, vol.22
, pp. 1-26
-
-
Konermann, L.1
Simmons, D.A.2
-
38
-
-
0031919973
-
Evidence for barrier-limited protein folding kinetics on the microsecond time scale
-
Shastry M.C.R., Roder H. Evidence for barrier-limited protein folding kinetics on the microsecond time scale. Nat. Struct. Biol. 1998, 5:385-392.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 385-392
-
-
Shastry, M.C.R.1
Roder, H.2
-
39
-
-
0030844583
-
Ultrafast signals in protein folding and the polypeptide contracted state
-
Sosnick T.R., Shtilerman M.D., Mayne L., Englander S.W. Ultrafast signals in protein folding and the polypeptide contracted state. Proc. Natl Acad. Sci. USA 1997, 94:8545-8550.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 8545-8550
-
-
Sosnick, T.R.1
Shtilerman, M.D.2
Mayne, L.3
Englander, S.W.4
-
40
-
-
0029967474
-
Side chain packing of the N- and C-terminal helices plays a critical role in the kinetics of cytochrome c folding
-
Colon W., Elöve G.A., Wakem L.P., Sherman F., Roder H. Side chain packing of the N- and C-terminal helices plays a critical role in the kinetics of cytochrome c folding. Biochemistry 1996, 35:5538-5549.
-
(1996)
Biochemistry
, vol.35
, pp. 5538-5549
-
-
Colon, W.1
Elöve, G.A.2
Wakem, L.P.3
Sherman, F.4
Roder, H.5
-
41
-
-
0027442944
-
A noncovalent peptide complex as a model for an early folding intermediate of cytochrome c
-
Wu L.C., Laub P.B., Elöve G.A., Carey J., Roder H. A noncovalent peptide complex as a model for an early folding intermediate of cytochrome c. Biochemistry 1993, 32:10271-10276.
-
(1993)
Biochemistry
, vol.32
, pp. 10271-10276
-
-
Wu, L.C.1
Laub, P.B.2
Elöve, G.A.3
Carey, J.4
Roder, H.5
-
42
-
-
5144229665
-
Protein misfolding: optional barriers, misfolded intermediates, and pathway heterogeneity
-
Krishna M.M.G., Lin Y., Englander S.W. Protein misfolding: optional barriers, misfolded intermediates, and pathway heterogeneity. J. Mol. Biol. 2004, 343:1095-1109.
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 1095-1109
-
-
Krishna, M.M.G.1
Lin, Y.2
Englander, S.W.3
-
43
-
-
0030816577
-
Identification of the predominant non-native histidine ligand in unfolded cytochrome c
-
Colon W., Wakem L.P., Sherman F., Roder H. Identification of the predominant non-native histidine ligand in unfolded cytochrome c. Biochemistry 1997, 36:12535-12541.
-
(1997)
Biochemistry
, vol.36
, pp. 12535-12541
-
-
Colon, W.1
Wakem, L.P.2
Sherman, F.3
Roder, H.4
-
44
-
-
0032488914
-
Cytochrome c folding traps are not due solely to histidine-heme ligation: direct demonstration of a role for N-terminal amino group-heme ligation
-
Hammack B., Shubhada G., Bowler B.E. Cytochrome c folding traps are not due solely to histidine-heme ligation: direct demonstration of a role for N-terminal amino group-heme ligation. J. Mol. Biol. 1998, 275:719-724.
-
(1998)
J. Mol. Biol.
, vol.275
, pp. 719-724
-
-
Hammack, B.1
Shubhada, G.2
Bowler, B.E.3
-
45
-
-
0021111761
-
Manipulation of the observed kinetic phases in the refolding of denatured ferricytochrome c
-
Brems D.N., Stellwagen E. Manipulation of the observed kinetic phases in the refolding of denatured ferricytochrome c. J. Biol. Chem. 1983, 258:3655-3660.
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 3655-3660
-
-
Brems, D.N.1
Stellwagen, E.2
-
46
-
-
0028352044
-
Kinetic mechanism of cytochrome c folding: involvement of the heme and its ligands
-
Elöve G.A., Bhuyan A.K., Roder H. Kinetic mechanism of cytochrome c folding: involvement of the heme and its ligands. Biochemistry 1994, 33:6925-6935.
-
(1994)
Biochemistry
, vol.33
, pp. 6925-6935
-
-
Elöve, G.A.1
Bhuyan, A.K.2
Roder, H.3
-
47
-
-
0028402689
-
The barriers in protein folding
-
Sosnick T.R., Mayne L., Hiller R., Englander S.W. The barriers in protein folding. Nat. Struct. Biol. 1994, 1:149-156.
-
(1994)
Nat. Struct. Biol.
, vol.1
, pp. 149-156
-
-
Sosnick, T.R.1
Mayne, L.2
Hiller, R.3
Englander, S.W.4
-
48
-
-
0034130699
-
Hierarchical folding of cytochrome c
-
Yeh S.-R., Rousseau D.L. Hierarchical folding of cytochrome c. Nat. Struct. Biol. 2000, 7:443-445.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 443-445
-
-
Yeh, S.-R.1
Rousseau, D.L.2
-
49
-
-
0031717338
-
Speeding along the protein folding highway, are we reading the signs correctly?
-
Jennings P.A. Speeding along the protein folding highway, are we reading the signs correctly?. Nat. Struct. Biol. 1998, 5:846-848.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 846-848
-
-
Jennings, P.A.1
-
50
-
-
1442277673
-
Folding barrier in horse cytochrome c: support for a classical folding pathway
-
Prabhu N.P., Kumar R., Bhuyan A.K. Folding barrier in horse cytochrome c: support for a classical folding pathway. J. Mol. Biol. 2004, 337:195-208.
-
(2004)
J. Mol. Biol.
, vol.337
, pp. 195-208
-
-
Prabhu, N.P.1
Kumar, R.2
Bhuyan, A.K.3
-
51
-
-
16344382372
-
Protein folding: the stepwise assembly of foldon units
-
Maity H., Maity M., Krishna M.M.G., Mayne L., Englander S.W. Protein folding: the stepwise assembly of foldon units. Proc. Natl Acad. Sci. USA 2005, 102:4741-4746.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 4741-4746
-
-
Maity, H.1
Maity, M.2
Krishna, M.M.G.3
Mayne, L.4
Englander, S.W.5
-
52
-
-
73149115063
-
Helical structure and stability in human apolipoprotein A-I by hydrogen exchange and mass spectrometry
-
Chetty P.S., Mayne L., Lund-Katz S., Stranz D.D., Englander S.W., Phillips M.C. Helical structure and stability in human apolipoprotein A-I by hydrogen exchange and mass spectrometry. Proc. Natl Acad. Sci. USA 2009, 106:19005-19010.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 19005-19010
-
-
Chetty, P.S.1
Mayne, L.2
Lund-Katz, S.3
Stranz, D.D.4
Englander, S.W.5
Phillips, M.C.6
-
53
-
-
38149135803
-
Solution insights into the structure of the Efb/C3 complement inhibitory complex as revealed by lysine acetylation and mass spectrometry
-
Chen H., Schuster M.C., Sfyroera G., Geisbrecht B.V., Lambris J.D. Solution insights into the structure of the Efb/C3 complement inhibitory complex as revealed by lysine acetylation and mass spectrometry. J. Am. Soc. Mass Spectrom. 2008, 19:55-65.
-
(2008)
J. Am. Soc. Mass Spectrom.
, vol.19
, pp. 55-65
-
-
Chen, H.1
Schuster, M.C.2
Sfyroera, G.3
Geisbrecht, B.V.4
Lambris, J.D.5
-
54
-
-
84918833988
-
Critical review of rate constants for reactions of hydrated electrons, hydrogen atoms and hydroxyl radicals (OH/O) in aqueous solution
-
Buxton G.V., Greenstock C.L., Helman W.P., Ross A.B. Critical review of rate constants for reactions of hydrated electrons, hydrogen atoms and hydroxyl radicals (OH/O) in aqueous solution. J. Phys. Chem. Ref. Data 1988, 17:513-886.
-
(1988)
J. Phys. Chem. Ref. Data
, vol.17
, pp. 513-886
-
-
Buxton, G.V.1
Greenstock, C.L.2
Helman, W.P.3
Ross, A.B.4
-
55
-
-
69849100869
-
Probing protein structure by amino acid-specific covalent labeling and mass spectrometry
-
Mendoza V.L., Vachet R.W. Probing protein structure by amino acid-specific covalent labeling and mass spectrometry. Mass Spectrom. Rev. 2009, 28:785-815.
-
(2009)
Mass Spectrom. Rev.
, vol.28
, pp. 785-815
-
-
Mendoza, V.L.1
Vachet, R.W.2
-
56
-
-
65549094060
-
Painting proteins with covalent labels: what's in the picture?
-
Fitzgerald M.C., West G.M. Painting proteins with covalent labels: what's in the picture?. J. Am. Soc. Mass Spectrom. 2009, 20:1193-1206.
-
(2009)
J. Am. Soc. Mass Spectrom.
, vol.20
, pp. 1193-1206
-
-
Fitzgerald, M.C.1
West, G.M.2
-
57
-
-
38049108092
-
Exploring the cooperativity of the fast folding reaction of a small protein using pulsed thiol labeling and mass spectrometry
-
Jha S.K., Udgaonkar J.B. Exploring the cooperativity of the fast folding reaction of a small protein using pulsed thiol labeling and mass spectrometry. J. Biol. Chem. 2007, 282:37479-37491.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 37479-37491
-
-
Jha, S.K.1
Udgaonkar, J.B.2
-
58
-
-
24944566705
-
Nanosecond laser-induced photochemical oxidation method for protein surface mapping with mass spectrometry
-
Aye T.T., Low T.Y., Sze S.K. Nanosecond laser-induced photochemical oxidation method for protein surface mapping with mass spectrometry. Anal. Chem. 2005, 77:5814-5822.
-
(2005)
Anal. Chem.
, vol.77
, pp. 5814-5822
-
-
Aye, T.T.1
Low, T.Y.2
Sze, S.K.3
-
59
-
-
27844593258
-
Laser flash photolysis of hydrogen peroxide to oxidize protein solvent-accessible residues on the microsecond timescale
-
Hambly D.M., Gross M.L. Laser flash photolysis of hydrogen peroxide to oxidize protein solvent-accessible residues on the microsecond timescale. J. Am. Soc. Mass Spectrom. 2005, 16:2057-2063.
-
(2005)
J. Am. Soc. Mass Spectrom.
, vol.16
, pp. 2057-2063
-
-
Hambly, D.M.1
Gross, M.L.2
-
60
-
-
67249157665
-
Microsecond time-scale hydroxyl radical profiling of solvent-accessible protein residues
-
Elsevier, Amsterdam, The Netherlands, J.P. Whitelegge (Ed.)
-
Hambly D.M., Gross M.L. Microsecond time-scale hydroxyl radical profiling of solvent-accessible protein residues. Protein Mass Spectrometry 2009, Vol. 52:151-177. Elsevier, Amsterdam, The Netherlands. J.P. Whitelegge (Ed.).
-
(2009)
Protein Mass Spectrometry
, vol.52
, pp. 151-177
-
-
Hambly, D.M.1
Gross, M.L.2
-
61
-
-
34548337296
-
Hydroxyl radical-mediated modification of proteins as probes for structural proteomics
-
Xu G., Chance M.R. Hydroxyl radical-mediated modification of proteins as probes for structural proteomics. Chem. Rev. 2007, 107:3514-3543.
-
(2007)
Chem. Rev.
, vol.107
, pp. 3514-3543
-
-
Xu, G.1
Chance, M.R.2
-
62
-
-
42949174122
-
Development of an electrochemical oxidation method for probing higher order protein structure with mass spectrometry
-
McClintock C., Kertesz V., Hettich R.L. Development of an electrochemical oxidation method for probing higher order protein structure with mass spectrometry. Anal. Chem. 2008, 80:3304-3317.
-
(2008)
Anal. Chem.
, vol.80
, pp. 3304-3317
-
-
McClintock, C.1
Kertesz, V.2
Hettich, R.L.3
-
63
-
-
53249124822
-
Probing the pH-dependent prepore to pore transition of Bacillus anthracis protective antigen with differential oxidative protein footprinting
-
Smedley J.G., Sharp J.S., Kuhn J.F., Tomer K.B. Probing the pH-dependent prepore to pore transition of Bacillus anthracis protective antigen with differential oxidative protein footprinting. Biochemistry 2008, 47:10694-10704.
-
(2008)
Biochemistry
, vol.47
, pp. 10694-10704
-
-
Smedley, J.G.1
Sharp, J.S.2
Kuhn, J.F.3
Tomer, K.B.4
-
64
-
-
64849104016
-
Pulsed electron beam water radiolysis for submicrosecond hydroxyl radical protein footprinting
-
Watson C., Janik I., Zhuang T., Charvatova O., Woods R.J., Sharp J.S. Pulsed electron beam water radiolysis for submicrosecond hydroxyl radical protein footprinting. Anal. Chem. 2009, 81:2496-2505.
-
(2009)
Anal. Chem.
, vol.81
, pp. 2496-2505
-
-
Watson, C.1
Janik, I.2
Zhuang, T.3
Charvatova, O.4
Woods, R.J.5
Sharp, J.S.6
-
65
-
-
0035497782
-
Radical approaches to probe protein structure, folding, and interactions by mass spectrometry
-
Maleknia S.D., Downard K. Radical approaches to probe protein structure, folding, and interactions by mass spectrometry. Mass Spectrom. Rev. 2001, 20:388-401.
-
(2001)
Mass Spectrom. Rev.
, vol.20
, pp. 388-401
-
-
Maleknia, S.D.1
Downard, K.2
-
66
-
-
58149462266
-
Structural characterization of short-lived protein unfolding intermediates by laser-induced oxidative labeling and mass spectrometry
-
Stocks B.B., Konermann L. Structural characterization of short-lived protein unfolding intermediates by laser-induced oxidative labeling and mass spectrometry. Anal. Chem. 2009, 81:20-27.
-
(2009)
Anal. Chem.
, vol.81
, pp. 20-27
-
-
Stocks, B.B.1
Konermann, L.2
-
67
-
-
34548768193
-
Symmetric behavior of hemoglobin γ- and β-subunits during acid-induced denaturation observed by electrospray mass spectrometry
-
Boys B.L., Kuprowski M.C., Konermann L. Symmetric behavior of hemoglobin γ- and β-subunits during acid-induced denaturation observed by electrospray mass spectrometry. Biochemistry 2007, 46:10675-10684.
-
(2007)
Biochemistry
, vol.46
, pp. 10675-10684
-
-
Boys, B.L.1
Kuprowski, M.C.2
Konermann, L.3
-
68
-
-
18844415551
-
Secondary reactions and strategies to improve quantitative protein footprinting
-
Xu G., Kiselar J., He Q., Chance M.R. Secondary reactions and strategies to improve quantitative protein footprinting. Anal. Chem. 2005, 77:3029-3037.
-
(2005)
Anal. Chem.
, vol.77
, pp. 3029-3037
-
-
Xu, G.1
Kiselar, J.2
He, Q.3
Chance, M.R.4
-
69
-
-
33747596165
-
Oxidative damage of DNA induced by the cytochrome c and hydrogen peroxide system
-
Kim N.H., Kang J.H. Oxidative damage of DNA induced by the cytochrome c and hydrogen peroxide system. J. Biochem. Mol. Biol. 2006, 39:452-456.
-
(2006)
J. Biochem. Mol. Biol.
, vol.39
, pp. 452-456
-
-
Kim, N.H.1
Kang, J.H.2
-
70
-
-
0022020912
-
The degradation of cytochrome c by hydrogen peroxide
-
Florence T.M. The degradation of cytochrome c by hydrogen peroxide. J. Inorg. Biochem. 1985, 23:131-141.
-
(1985)
J. Inorg. Biochem.
, vol.23
, pp. 131-141
-
-
Florence, T.M.1
-
71
-
-
0037195257
-
Peroxidase activity as a tool for studying the folding of c-type cytochromes
-
Diederix R.E.M., Ubbink M., Canters G.W. Peroxidase activity as a tool for studying the folding of c-type cytochromes. Biochemistry 2002, 41:13067-13077.
-
(2002)
Biochemistry
, vol.41
, pp. 13067-13077
-
-
Diederix, R.E.M.1
Ubbink, M.2
Canters, G.W.3
-
72
-
-
0023369081
-
Hemes and hemoproteins: 5. Kinetics of the peroxidatic activity of microperoxidase-8: model for the peroxidase enzymes
-
Baldwin D.A., Marques H.M., Pratt J.M. Hemes and hemoproteins: 5. Kinetics of the peroxidatic activity of microperoxidase-8: model for the peroxidase enzymes. J. Inorg. Biochem. 1987, 30:203-217.
-
(1987)
J. Inorg. Biochem.
, vol.30
, pp. 203-217
-
-
Baldwin, D.A.1
Marques, H.M.2
Pratt, J.M.3
-
73
-
-
69749120545
-
Cold chemical oxidation of proteins
-
Hambly D.M., Gross M.L. Cold chemical oxidation of proteins. Anal. Chem. 2009, 81:7235-7242.
-
(2009)
Anal. Chem.
, vol.81
, pp. 7235-7242
-
-
Hambly, D.M.1
Gross, M.L.2
-
74
-
-
0017077475
-
The kinetics and mechanism of the recombination reaction between apomyoglobin and haemin
-
Adams P.A. The kinetics and mechanism of the recombination reaction between apomyoglobin and haemin. Biochem. J. 1976, 159:371-376.
-
(1976)
Biochem. J.
, vol.159
, pp. 371-376
-
-
Adams, P.A.1
-
75
-
-
70449687854
-
Mapping the structure of an integral membrane protein under semi-denaturing conditions by laser-induced oxidative labeling and mass spectrometry
-
Pan Y., Brown L., Konermann L. Mapping the structure of an integral membrane protein under semi-denaturing conditions by laser-induced oxidative labeling and mass spectrometry. J. Mol. Biol. 2009, 394:968-981.
-
(2009)
J. Mol. Biol.
, vol.394
, pp. 968-981
-
-
Pan, Y.1
Brown, L.2
Konermann, L.3
-
76
-
-
0015526732
-
Participation of the protein ligands in the folding of cytochrome c
-
Babul J., Stellwagen W. Participation of the protein ligands in the folding of cytochrome c. Biochemistry 1972, 7:1195-1200.
-
(1972)
Biochemistry
, vol.7
, pp. 1195-1200
-
-
Babul, J.1
Stellwagen, W.2
-
77
-
-
0016390528
-
Guanidine hydrochloride and acid denaturation of horse, cow, and Candida krusei cytochromes c
-
Knapp J.A., Pace C.N. Guanidine hydrochloride and acid denaturation of horse, cow, and Candida krusei cytochromes c. Biochemistry 1971, 13:1289-1294.
-
(1971)
Biochemistry
, vol.13
, pp. 1289-1294
-
-
Knapp, J.A.1
Pace, C.N.2
-
78
-
-
0016717998
-
Stabilisation of the globular structure of ferricytochrome c by chloride in acidic solvents
-
Stellwagen E., Babul J. Stabilisation of the globular structure of ferricytochrome c by chloride in acidic solvents. Biochemistry 1975, 23:5135-5140.
-
(1975)
Biochemistry
, vol.23
, pp. 5135-5140
-
-
Stellwagen, E.1
Babul, J.2
-
79
-
-
41449103552
-
α-Ray-mediated oxidative labeling for detecting protein conformational changes by electrospray mass spectrometry
-
Tong X., Wren J.C., Konermann L. α-Ray-mediated oxidative labeling for detecting protein conformational changes by electrospray mass spectrometry. Anal. Chem. 2008, 80:2222-2231.
-
(2008)
Anal. Chem.
, vol.80
, pp. 2222-2231
-
-
Tong, X.1
Wren, J.C.2
Konermann, L.3
-
80
-
-
10044269982
-
Many faces of the unfolded state: conformational heterogeneity in denatured yeast cytochrome c
-
Pletneva E.V., Gray H.B., Winkler J.R. Many faces of the unfolded state: conformational heterogeneity in denatured yeast cytochrome c. J. Mol. Biol. 2005, 345:855-867.
-
(2005)
J. Mol. Biol.
, vol.345
, pp. 855-867
-
-
Pletneva, E.V.1
Gray, H.B.2
Winkler, J.R.3
-
81
-
-
84987419408
-
Proposal for a common nomenclature for sequence ions in mass spectra of peptides
-
Roepstorff P. Proposal for a common nomenclature for sequence ions in mass spectra of peptides. Biomed. Mass Spectrom. 1984, 11:601.
-
(1984)
Biomed. Mass Spectrom.
, vol.11
, pp. 601
-
-
Roepstorff, P.1
-
82
-
-
4644320661
-
Hydroxyl radical oxidation of cytochrome c by aerobic radiolysis
-
Nukuna B.N., Sun G., Anderson V.E. Hydroxyl radical oxidation of cytochrome c by aerobic radiolysis. Free Radical Biol. Med. 2004, 37:1203-1213.
-
(2004)
Free Radical Biol. Med.
, vol.37
, pp. 1203-1213
-
-
Nukuna, B.N.1
Sun, G.2
Anderson, V.E.3
-
83
-
-
49549086897
-
Protein structure and dynamics studied by mass spectrometry: H/D exchange, hydroxyl radical labeling, and related approaches
-
Konermann L., Tong X., Pan Y. Protein structure and dynamics studied by mass spectrometry: H/D exchange, hydroxyl radical labeling, and related approaches. J. Mass Spectrom. 2008, 43:1021-1036.
-
(2008)
J. Mass Spectrom.
, vol.43
, pp. 1021-1036
-
-
Konermann, L.1
Tong, X.2
Pan, Y.3
-
84
-
-
0017759978
-
Unfolding and refolding occur much faster for a proline-free protein than for most proline-containing proteins
-
Brandts J.F., Brennan M., Lin L. Unfolding and refolding occur much faster for a proline-free protein than for most proline-containing proteins. Proc. Natl Acad. Sci. USA 1977, 74:4178-4181.
-
(1977)
Proc. Natl Acad. Sci. USA
, vol.74
, pp. 4178-4181
-
-
Brandts, J.F.1
Brennan, M.2
Lin, L.3
-
85
-
-
0029810821
-
Nature of the unfolded state of ribonuclease A: effect of cis-trans X-Pro peptide bond isomerisation
-
Houry W.A., Scheraga H.A. Nature of the unfolded state of ribonuclease A: effect of cis-trans X-Pro peptide bond isomerisation. Biochemistry 1996, 35:11719-11733.
-
(1996)
Biochemistry
, vol.35
, pp. 11719-11733
-
-
Houry, W.A.1
Scheraga, H.A.2
-
86
-
-
0028820703
-
Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding
-
Myers J.K., Pace C.N., Schotz J.M. Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding. Protein Sci. 1995, 4:2138-2148.
-
(1995)
Protein Sci.
, vol.4
, pp. 2138-2148
-
-
Myers, J.K.1
Pace, C.N.2
Schotz, J.M.3
-
87
-
-
0035919775
-
Origin of apparent fast and non-exponential kinetics of lysozyme folding measured in pulsed hydrogen exchange experiments
-
Bieri O., Kiefhaber T. Origin of apparent fast and non-exponential kinetics of lysozyme folding measured in pulsed hydrogen exchange experiments. J. Mol. Biol. 2001, 310:919-935.
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 919-935
-
-
Bieri, O.1
Kiefhaber, T.2
-
88
-
-
68849107091
-
Fast photochemical oxidation of protein footprints faster than protein unfolding
-
Gau B.C., Sharp J.S., Rempel D.L., Gross M.L. Fast photochemical oxidation of protein footprints faster than protein unfolding. Anal. Chem. 2009, 81:6563-6571.
-
(2009)
Anal. Chem.
, vol.81
, pp. 6563-6571
-
-
Gau, B.C.1
Sharp, J.S.2
Rempel, D.L.3
Gross, M.L.4
-
89
-
-
33744937937
-
Early events in protein folding explored by rapid mixing methods
-
Roder H., Maki K., Cheng H. Early events in protein folding explored by rapid mixing methods. Chem. Rev. 2006, 106:1836-1861.
-
(2006)
Chem. Rev.
, vol.106
, pp. 1836-1861
-
-
Roder, H.1
Maki, K.2
Cheng, H.3
-
90
-
-
0000060598
-
Monitoring reaction kinetics by continuous-flow methods: the effects of convection and molecular diffusion under laminar flow conditions
-
Konermann L. Monitoring reaction kinetics by continuous-flow methods: the effects of convection and molecular diffusion under laminar flow conditions. J. Phys. Chem. A 1999, 103:7210-7216.
-
(1999)
J. Phys. Chem. A
, vol.103
, pp. 7210-7216
-
-
Konermann, L.1
-
91
-
-
33750294048
-
Direct observation of oligomeric species formed in the early stages of amyloid formation using electrospray ionization mass spectrometry
-
Smith A.M., Jahn T.R., Ashcroft A.E., Radford S.E. Direct observation of oligomeric species formed in the early stages of amyloid formation using electrospray ionization mass spectrometry. J. Mol. Biol. 2006, 364:9-19.
-
(2006)
J. Mol. Biol.
, vol.364
, pp. 9-19
-
-
Smith, A.M.1
Jahn, T.R.2
Ashcroft, A.E.3
Radford, S.E.4
|