Protein Folding Triggered by Electron Transfer

Accounts of Chemical Research

Volumn 31, Issue 11, 1998, Pages 755-763

  Telford, Jason R ^a,b,c,d   Wittung Stafshede, Pernilla ^a,c,e,f   Gray, Harry B ^a,g,h,i,j   Winkler, Jay R ^a,j,k,l  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^d UNIVERSITY OF IOWA   (United States)

^e CHALMERS UNIVERSITY OF TECHNOLOGY   (Sweden)

^f TULANE UNIVERSITY   (United States)

^g NORTHWESTERN UNIVERSITY   (United States)

^h UNIVERSITY OF COPENHAGEN   (Denmark)

ⁱ Och Spine at New York Presbyterian Hospitals   (United States)

^j UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^k Laser Resource Center

^l BROOKHAVEN NATIONAL LABORATORY   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0000122609     PISSN: 00014842     EISSN: None     Source Type: Journal    
DOI: 10.1021/ar970078t     Document Type: Article

References (76)

1. Bryngelson, J. D.; Onuchic, J. N.; Wolynes, P. G. Funnels, Pathways and the Energy Landscape of Protein Folding - A Synthesis. Proteins: Struct., Funct., Genet. 1995, 21, 167-195.
2. Dill, K. A.; Chan, H. S. From Levinthal to Pathways to Funnels. Nat. Struct. Biol. 1997, 4, 10-19.
3. Shakhnovich, E. I. Theoretical Studies of Protein-Folding Thermodynamics and Kinetics. Curr. Opin. Struct. Biol. 1997, 7, 29-40.
4. Lazaridis, T.; Karplus, M. "New View" of Protein Folding Reconciled with the Old Through Multiple Unfolding Simulations. Science 1997, 278, 1928-1931.
5. Onuchic, J. N.; Lutheyschulten, Z.; Wolynes, P. G. Theory of Protein-Folding - the Energy Landscape Perspective. Annu. Rev. Phys. Chem. 1997, 48, 545-600.
6. Chen, L. X.-Q.; Petrich, J. W.; Fleming, G. R.; Perico, A. Picosecond Fluorescence Studies of Polypeptide Dynamics: Fluorescence Anisotropies and Lifetimes. Chem. Phys. Lett. 1987, 139, 55-61.
7. Williams, S.; Causgrove, T. P.; Gilmanshin, R.; Fang, K. S.; Callender, R. H.; Woodruff, W. H.; Dyer, R. B. Fast Events in Protein Folding: Helix Melting and Formation in a Small Peptide. Biochemistry 1996, 35, 691-697.
8. Koide, S.; Dyson, H. J.; Wright, P. E. Characterization of a Folding Intermediate of Apoplastocyanin Trapped by Proline Isomerization. Biochemistry 1993, 32, 12299-12310.
9. Karplus, M.; Weaver, D. L. Protein Folding Dynamics: The Diffusion-Collision Model and Experimental Data. Protein Sci. 1994, 3, 650-668.
10. Zwanzig, R. Simple Model of Protein Folding Kinetics. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 9801-9804.
11. Jones, C. M.; Henry, E. R.; Hu, Y.; Chan, C.-K.; Luck, S. D.; Bhuyan, A.; Roder, H.; Hofrichter, J.; Eaton, W. A. Fast Events in Protein Folding Initiated by Nanosecond Laser Photolysis. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 11860-11864.
12. Elöve, G.; Bhuyan, A. K.; Roder, H. Kinetic Mechanism of Cytochrome c Folding: Involvement of the Heme and its Ligands. Biochemistry 1994, 33, 6925-6935.
13. Sosnick, T. R.; Mayne, L.; Hiller, R.; Englander, S. W. The Barriers in Protein Folding. Nat. Struct. Biol. 1994, 1, 149-156.
14. Baldwin, R. L. Finding Intermediates in Protein Folding. BioEssays 1994, 16, 207-210.
15. Fersht, A. R. Characterizing Transition States in Protein Folding: an Essential Step in the Puzzle. Curr. Opin. Struct. Biol. 1995, 5, 79-84.
16. Ptitsyn, O. B. Molten Globule and Protein Folding. Adv. Protein Chem. 1995, 47, 83-229.
17. Englander, S. W.; Mayne, L. Protein Folding Studies Using Hydrogen-Exchange Labeling and Two-Dimensional NMR. Annu. Rev. Biophys. Biomol. Struct. 1992, 21, 243-265.
18. Plaxco, K.; Dobson, C. M. Time-Resolved Biophysical Methods in the Study of Protein Folding. Curr. Opin. Struct. Biol. 1996, 6, 630-636.
19. Kuwajima, K.; Yamaya, H.; Miwa, S.; Sugai, S.; Nagamura, T. Rapid Formation of Secondary Structure Framework in Protein Folding Studied by Stopped-Flow Circular Dichroism. FEBS Lett. 1987, 221, 115-118.
20. Milla, M. E.; Brown, B. M.; Waldburger, C. D.; Sauer, R. T. P22 Arc Repressor: Transition State Properties Inferred from Mutational Effects on the Rates of Protein Unfolding and Refolding. Biochemistry 1995, 34, 13914-13919.
21. Villegas, V.; Azuaga, A.; Catasús, L.; Reverter, D.; Mateo, P. L.; Avilés, F. X.; Serrano, L. Evidence for a Two-State Transition in the Folding Process of the Activation Domain of Human Procarboxypeptidase A2. Biochemistry 1995, 34, 15105-15110.
22. Hooke, S. D.; Radford, S. E.; Dobson, C. M. The Refolding of Human Lysozyme: A Comparison with the Structurally Homologous Hen Lysozyme. Biochemistry 1994, 33, 5867-5876.
23. Kragelund, B. B.; Robinson, C. V.; Knudsen, J.; Dobson, C. M.; Poulsen, F. M. Folding of a Four-Helix Bundle: Studies of Acyl-Coenzyme A Binding Protein. Biochemistry 1995, 34, 7217-7224.
24. Woodward, C. K. Hydrogen Exchange Rates and Protein Folding. Curr. Opin. Struct. Biol. 1994, 4, 112-116.
25. Plaxco, K. W.; Claus, S.; Campbell, I. D.; Dobson, C. M. Rapid Refolding of a Proline-Rich All-Beta-Sheet Fibronectin Type III Module. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 10703-10706.
26. Bai, Y.; Sosnick, T. R.; Mayne, L.; Englander, S. W. Protein Folding Intermediates: Native-State Hydrogen Exchange. Science 1995, 269, 192-197.
27. Englander, S. W.; Mayne, L.; Bai, Y.; Sosnick, T. R. Hydrogen Exchange: The Modern Legacy of Linderstrøm-Lang. Protein Sci. 1997, 6, 1101-1109.
28. Elöve, G. A.; Chaffotte, A. F.; Roder, H.; Goldberg, M. Early Steps in Cytochrome c Folding Probed by Time-Resolved Circular Dichroism and Fluorescence Spectroscopy. Biochemistry 1992, 31, 6876-6883.
29. Houry, W. A.; Rothwarf, D. M.; Scheraga, H. A. Circular Dichroism Evidence for the Presence of Burst-Phase Intermediates on the Conformational Folding Pathway of Ribonuclease A. Biochemistry 1996, 35, 10125-10133.
30. Arai, M.; Kuwajima, K. Rapid Formation of a Molten Globule Intermediate in Refolding of α-Lactalbumin. Folding Des. 1996, 1, 275-287.
31. Yamasaki, K.; Ogasahara, K.; Yutani, K.; Oobatake, M.; Kanaya, S. Folding Pathway of Escherichia coli Ribonuclease HI: A Circular Dichroism, Fluorescence, and NMR Study. Biochemistry 1995, 34, 16552-16562.
32. Jones, B. E.; Beechem, J. M.; Matthews, C. R. Local and Global Dynamics during the Folding of Escherichia coli Dihydrofolate Reductase by Time-Resolved Fluorescence Spectroscopy. Biochemistry 1995, 34, 1867-1877.
33. Chan, C. K.; Hu, Y.; Takahashi, S.; Rousseau, D. L.; Eaton, W. A.; Hofrichter, J. Submillisecond Protein-Folding Kinetics Studied by Ultrarapid Mixing. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 1779-1784.
34. Chan, C. K.; Eaton, W. A.; Hofrichter, J. Submillisecond Processes in Protein Folding Studied by Ultrarapid Mixing and Continuous Flow. Biophys. J. 1997, 72, 383.
35. Takahashi, S.; Yeh, S.-R.; Das, T. K.; Chan, C.-K.; Gottfried, D. S.; Rousseau, D. L. Folding of Cytochrome c Initiated by Submillisecond Mixing. Nat. Struct. Biol. 1997, 4, 44-50.
36. Yeh, S.-R.; Takahashi, S.; Fan, B.; Rousseau, D. L. Ligand Exchange During Cytochrome c Folding. Nat. Struct. Biol. 1997, 4, 51-56.
37. Shastry, M. C. R.; Roder, H. Evidence for Barrier-Limited Protein-Folding Kinetics on the Microsecond Time-Scale. Nat. Struct. Biol. 1998, 5, 385-392.
38. Nölting, B.; Golbik, R.; Fersht, A. R. Submillisecond Events in Protein Folding. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 10668-10672.
39. Nölting, B.; Golbik, R.; Niera, J. L.; Soler-Gonzalez, A. S.; Schreiber, G.; Fersht, A. R. The Folding Pathway of a Protein at High Resolution from Microseconds to Seconds. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 826-830.
40. Ballew, R. M.; Sabelko, J.; Gruebele, M. Direct Observation of Fast Protein Folding: The Initial Collapse of Apomyoglobin. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 5759-5764.
41. Woodruff, W. H.; Dyer, R. B.; Callender, R. H.; Paige, K.; Causgrove, T. Fast Events in Protein Folding -Laser T-jump Time-Resolved Infrared Study of the Ribonuclease-A S-peptide. Biophys. J. 1994, 66, A397.
42. Phillips, C. M.; Mizutani, Y.; Hochstrasser, R. M. Ultrafast Thermally Induced Unfolding of RNase A. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 7292-7296.
43. Munoz, V.; Thompson, P. A.; Hofrichter, J.; Eaton, W. A. Folding Dynamics and Mechanism of Beta-Hairpin Formation. Nature 1997, 390, 196-199.
44. Thompson, P. A.; Eaton, W. A.; Hofrichter, J. Laser Temperature-Jump Study of the Helix ⇌ Coil Kinetics of an Alanine Peptide Interpreted with a Kinetic Zipper Model. Biochemistry 1997, 36, 9200-9210.
45. Pascher, T.; Chesick, J. P.; Winkler, J. R.; Gray, H. B. Protein Folding Triggered by Electron Transfer. Science 1996, 271, 1558-1560.
46. Churg, A. K.; Warshel, A. Control of the Redox Potential of Cytochrome c and Microscopic Dielectric Effects in Proteins. Biochemistry 1986, 25, 1675-1681.
47. Bixler, J.; Bakker, G.; McLendon, G. Electrochemical Probes of Protein Folding. J. Am. Chem. Soc. 1992, 114, 6938-6939.
48. Chen, B.-L.; Baase, W. A.; Nicholson, H.; Schellman, J. A. Folding Kinetics of T4 Lysozyme and Nine Mutants at 12 °C Biochemistry 1992, 31, 1464-1476.
49. Matouschek, A.; Otzen, D. E.; Itzhaki, L. S.; Jackson, S. E.; Fersht, A. R. Movement of the Position of the Transition State in Protein Folding. Biochemistry 1995, 34, 13656-13662.
50. Yao, M.; Bolen, D. W. How Valid are Denaturant-Induced Free Energy Measurements? Level of Confidence to Common Assumptions over an Extended Range of Ribonuclease A Stability. Biochemistry 1995, 34, 3771-3781.
51. Winkler, J. R.; Wittung-Stafshede, P.; Leckner, J.; Malmström, B. G.; Gray, H. B. Effects Of Folding On Metalloprotein Active-Sites. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 4246-4249.
52. Mines, G. A.; Pascher, T.; Lee, S. C.; Winkler, J. R.; Gray, H. B. Cytochrome c Folding Triggered by Electron Transfer. Chem. Biol. 1996, 3, 491-497.
53. Mines, G. A.; Winkler, J. R.; Gray, H. B. Spectroscopic Studies of Ferrocytochrome c Folding. In Spectroscopic Methods in Bioinorganic Chemistry, Solomon, E. I., Hodgson, K. O., Eds.; American Chemical Society: Washington, DC, 1998.
54. 562 Folding Triggered by Electron Transfer. J. Am. Chem. Soc. 1997, 119, 9562-9563.
55. Wittung-Stafshede, P.; Malmström, B. G.; Winkler, J. R.; Gray, H. B. Folding of Deoxymyoglobin Triggered by Electron Transfer. J. Phys. Chem. A 1998, 102, 5599-5601.
56. Telford, J. R.; Tezcan, F. A.; Gray, H. B.; Winkler, J. R. Role of Ligand Substitution in Ferrocytochrome c Folding. Biochemistry, submitted for publication.
57. Orii, Y. Immediate Reduction of Cytochrome c by Photoexcited NADH. Reaction Mechanism as Revealed by Flow Flash and Rapid-Scan Studies. Biochemistry 1993, 32, 11910-11914.
58. Sosnick, T. R.; Mayne, L.; Englander, S. W. Molecular Collapse: The Rate-Limiting Step in Two-State Cytochrome c Folding. Proteins: Struct., Funct., Genet. 1996, 24, 413-426.
59. Sosnick, T. R.; Shtilerman, M. D.; Mayne, L.; Englander, S. W. Ultrafast Signals in Protein Folding and the Polypeptide Contracted State. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 8845-8550.
60. Colón, W.; Elöve, G. A.; Wakem, L. P.; Sherman, F.; Roder, H. Side Chain Packing of the N- and C-Terminal Helices Plays a Critical Role in the Kinetics of Cytochrome c Folding. Biochemistry 1996, 35, 5538-5549.
61. Pierce, M. M.; Nall, B. T. Fast Folding of Cytochrome c. Protein Sci. 1997, 6, 618-627.
62. Konermann, L.; Collings, B. A.; Douglas, D. J. Cytochrome c Folding Kinetics Studied by Time-Resolved Electrospray Ionization Mass Spectrometry. Biochemistry 1997, 36, 5554-5559.
63. Babul, J.; Stellwagen, E. Participation of the Protein Ligands in the Folding of Cytochrome c. Biochemistry 1972, 11, 1195-1200.
64. Muthukrishnan, K.; Nall, B. T. Effective Concentrations of Amino Acid Side Chains in an Unfolded Protein. Biochemistry 1991, 30, 4706-4710.
65. Colón, W.; Wakem, L. P.; Sherman, F.; Roder, H. Identification of the Predominant Non-Native Histidine Ligand in Unfolded Cytochrome c. Biochemistry 1997, 36, 12535-12541.
66. Godbole, S.; Bowler, B. E. A Histidine Variant of Yeast Iso-1-Cytochrome c that Strongly Affects the Energetics of the Denatured State. J. Mol. Biol. 1997, 268, 816-821.
67. Chan, C. K.; Hofrichter, J.; Eaton, W. A. Optical Triggers of Protein Folding. Science 1996, 274, 628-629.
68. Hagen, S. J.; Hofrichter, J.; Eaton, W. A. Rate of Intrachain Diffusion of Unfolded Cytochrome c. J. Phys. Chem. B 1997, 101, 2352-2365.
69. Winkler, J. R.; Gray, H. B. Optical Triggers Of Protein Folding - Response. Science 1996, 274, 629.
70. α-Acetyl Microperoxidase-8 with Hydrogen Peroxide: Models for Compounds 0, I and II of Horseradish Peroxidase. Biochem. Biophys. Res. Commun. 1991, 179, 1320-1324.
71. Tezcan, F. A.; Winkler, J. R.; Gray, H. B. Effects of Ligation and Folding on Reduction Potentials of Heme Proteins. J. Am. Chem. Soc., submitted for publication.
72. Antonini, E.; Brunori, M. Hemoglobin and Myoglobin in their Reactions with Ligands; North-Holland Publishing Co.: Amsterdam, 1971.
73. Telford, J. R.; Gray, H. B.; Winkler, J. R. To be submitted for publication.
74. 562, Complex from Cells in the Early Exponential Phase of Aerobic Growth. J. Biol. Chem. 1984, 259, 3368-3374.
75. 562 from Escherichia coli. Biochemistry 1991, 30, 10012-10018.
76. Wolynes, P. G. Symmetry and the Energy Landscapes of Biomolecules. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 14249-14255.