Crystal structure of human REV7 in complex with a human REV3 fragment and structural implication of the interaction between DNA polymerase ζ and REV1

Journal of Biological Chemistry

Volumn 285, Issue 16, 2010, Pages 12299-12307

  Hara, Kodai ^a   Hashimoto, Hiroshi ^a   Murakumo, Yoshiki ^b   Kobayashi, Shunsuke ^c   Kogame, Toshiaki ^c   Unzai, Satoru ^a   Akashi, Satoko ^a   Takeda, Shunichi ^c   Shimizu, Toshiyuki ^a   Sato, Mamoru ^a  

^a YOKOHAMA CITY UNIVERSITY   (Japan)

^b NAGOYA UNIVERSITY GRADUATE SCHOOL OF MEDICINE   (Japan)

^c KYOTO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTER PROTEINS; CELL CYCLE REGULATION; CELLULAR FUNCTION; DNA DAMAGES; DNA POLYMERASE; ERROR PRONES; FUNCTIONAL BASIS; LESION SITE; MEDIATED INTERACTION; NON-CATALYTIC; STRUCTURAL BASIS; STRUCTURAL INTERFACE; TRANSLESION DNA SYNTHESIS;

COMPLEXATION; DNA; FUNCTIONAL POLYMERS; GENES; POLYMERS; PROTEINS; SIGNAL TRANSDUCTION;

CRYSTAL STRUCTURE;

DNA DIRECTED DNA POLYMERASE GAMMA; DNA POLYMERASE REV1; PROTEIN REV3; PROTEIN REV7; REV PROTEIN; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; CELL CYCLE REGULATION; CELL FUNCTION; CONTROLLED STUDY; CRYSTAL STRUCTURE; DNA DAMAGE; HUMAN; HUMAN CELL; MOLECULAR MECHANICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DNA BINDING; PROTEIN DNA INTERACTION; PROTEIN FUNCTION; PROTEIN STRUCTURE; SIGNAL TRANSDUCTION;

AMINO ACID SEQUENCE; CELL LINE; CRYSTALLOGRAPHY, X-RAY; DNA DAMAGE; DNA-BINDING PROTEINS; DNA-DIRECTED DNA POLYMERASE; HUMANS; MODELS, BIOLOGICAL; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MULTIPROTEIN COMPLEXES; NUCLEAR PROTEINS; NUCLEOTIDYLTRANSFERASES; PEPTIDE FRAGMENTS; PROTEIN INTERACTION DOMAINS AND MOTIFS; PROTEIN SUBUNITS; PROTEINS; RECOMBINANT PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 77951218269     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.092403     Document Type: Article

References (55)

1. Moldovan, G. L., Pfander, B., and Jentsch, S. (2007) Cell 129, 665-679
2. Friedberg, E. C., Lehmann, A. R., and Fuchs, R. P. (2005) Mol. Cell 18, 499-505
3. Ohmori, H., Friedberg, E. C., Fuchs, R. P., Goodman, M. F., Hanaoka, F., Hinkle, D., Kunkel, T. A., Lawrence, C. W., Livneh, Z., Nohmi, T., Prakash, L., Prakash, S., Todo, T., Walker, G. C., Wang, Z., and Woodgate, R. (2001) Mol. Cell 8, 7-8
4. Vaisman, A., Lehmann, A. R., Woodgate, R., and Wei, Y. (2004) Adv. Protein Chem. 69, 205-228
5. Ohmori, H., Ohashi, E., and Ogi, T. (2004) Adv. Protein Chem. 69, 265-278
6. Lawrence, C. W. (2004) Adv. Protein Chem. 69, 167-203
7. Prakash, S., Johnson, R. E., and Prakash, L. (2005) Annu. Rev. Biochem. 74, 317-353
8. Guo, C., Kosarek-Stancel, J. N., Tang, T. S., and Friedberg, E. C. (2009) Cell Mol. Life Sci. 66, 2363-2381
9. Nelson, J. R., Lawrence, C. W., and Hinkle, D. C. (1996) Science 272, 1646-1649
10. Bemark, M., Khamlichi, A. A., Davies, S. L., and Neuberger, M. S. (2000) Curr. Biol. 10, 1213-1216
11. Wittschieben, J., Shivji, M. K., Lalani, E., Jacobs, M. A., Marini, F., Gearhart, P. J., Rosewell, I., Stamp, G., and Wood, R. D. (2000) Curr. Biol. 10, 1217-1220
12. Esposito, G., Godindagger, I., Klein, U., Yaspo, M. L., Cumano, A., and Rajewsky, K. (2000) Curr. Biol. 10, 1221-1224
13. Aravind, L., and Koonin, E. V. (1998) Trends Biochem. Sci. 23, 284-286
14. Chen, J., and Fang, G. (2001) Genes Dev. 15, 1765-1770
15. Iwai, H., Kim, M., Yoshikawa, Y., Ashida, H., Ogawa, M., Fujita, Y., Muller, D., Kirikae, T., Jackson, P. K., Kotani, S., and Sasakawa, C. (2007) Cell 130, 611-623
16. Zhang, L., Yang, S. H., and Sharrocks, A. D. (2007) Mol. Cell. Biol. 27, 2861-2869
17. Hong, C. F., Chou, Y. T., Lin, Y. S., and Wu, C. W. (2009) J. Biol. Chem. 284, 19613-19622
18. Murakumo, Y., Roth, T., Ishii, H., Rasio, D., Numata, S., Croce, C. M., and Fishel, R. (2000) J. Biol. Chem. 275, 4391-4397
19. Murakumo, Y., Ogura, Y., Ishii, H., Numata, S., Ichihara, M., Croce, C. M., Fishel, R., and Takahashi, M. (2001) J. Biol. Chem. 276, 35644-35651
20. Guo, C., Fischhaber, P. L., Luk-Paszyc, M. J., Masuda, Y., Zhou, J., Kamiya, K., Kisker, C., and Friedberg, E. C. (2003) EMBO J. 22, 6621-6630
21. Ohashi, E., Murakumo, Y., Kanjo, N., Akagi, J., Masutani, C., Hanaoka, F., and Ohmori, H. (2004) Genes Cells 9, 523-531
22. Masuda, Y., Ohmae, M., Masuda, K., and Kamiya, K. (2003) J. Biol. Chem. 278, 12356-12360
23. Lawrence, C. W., and Christensen, R. B. (1979) Genetics 92, 397-408
24. Lawrence, C. W., and Christensen, R. B. (1982) Mol. Gen. Genet. 186, 1-9
25. Lawrence, C. W., Das, G., and Christensen, R. B. (1985) Mol. Gen. Genet. 200, 80-85
26. Okada, T., Sonoda, E., Yoshimura, M., Kawano, Y., Saya, H., Kohzaki, M., and Takeda, S. (2005) Mol. Cell. Biol. 25, 6103-6111
27. Hishiki, A., Hashimoto, H., Hanafusa, T., Kamei, K., Ohashi, E., Shimizu, T., Ohmori, H., and Sato, M. (2009) J. Biol. Chem. 284, 10552-10560
28. Hara, K., Shimizu, T., Unzai, S., Akashi, S., Sato, M., and Hashimoto, H. (2009) Acta Crystallogr. Sect. F 65, 1302-1305
29. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
30. Terwilliger, T. C., and Berendzen, J. (1999) Acta Crystallogr. D Biol. Crystallogr. 55, 849-861
31. Terwilliger, T. C. (2000) Acta Crystallogr. D Biol. Crystallogr. 56, 965-972
32. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. Sect. A 47, 110-119
33. Emsley, P., and Cowtan, K. (2004) Acta Crystallogr. D Biol. Crystallogr. 60, 2126-2132
34. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. D Biol. Crystallogr. 54, 905-921
35. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. D Biol. Crystallogr. 53, 240-255
36. Vagin, A., and Teplyakov, A. (1997) J. Appl. Crystallogr. 30, 1022-1025
37. Kraulis, P. (1991) J. Appl. Crystallogr. 24, 946-950
38. Merritt, E. A., and Murphy, M. E. (1994) Acta Crystallogr. D Biol. Crystallogr. 50, 869-873
39. Bond, C. S. (2003) Bioinformatics 19, 311-312
40. Hardwick, K. G., and Murray, A. W. (1995) J. Cell Biol. 131, 709-720
41. Chen, R. H., Shevchenko, A., Mann, M., and Murray, A. W. (1998) J. Cell Biol. 143, 283-295
42. Jin, D. Y., Spencer, F., and Jeang, K. T. (1998) Cell 93, 81-91
43. Luo, X., Tang, Z., Rizo, J., and Yu, H. (2002) Mol. Cell 9, 59-71
44. Sironi, L., Mapelli, M., Knapp, S., De Antoni, A., Jeang, K. T., and Musacchio, A. (2002) EMBO J. 21, 2496-2506
45. Luo, X., Tang, Z., Xia, G., Wassmann, K., Matsumoto, T., Rizo, J., and Yu, H. (2004) Nat. Struct. Mol. Biol. 11, 338-345
46. Murakumo, Y. (2002) Mutat. Res. 510, 37-44
47. Mapelli, M., Massimiliano, L., Santaguida, S., and Musacchio, A. (2007) Cell 131, 730-743
48. Yang, M., Li, B., Tomchick, D. R., Machius, M., Rizo, J., Yu, H., and Luo, X. (2007) Cell 131, 744-755
49. Sonoda, E., Okada, T., Zhao, G. Y., Tateishi, S., Araki, K., Yamaizumi, M., Yagi, T., Verkaik, N. S., van Gent, D. C., Takata, M., and Takeda, S. (2003) EMBO J. 22, 3188-3197
50. Nelson, J. R., Lawrence, C. W., and Hinkle, D. C. (1996) Nature 382, 729-731
51. Lin, W., Xin, H., Zhang, Y., Wu, X., Yuan, F., and Wang, Z. (1999) Nucleic Acids Res. 27, 4468-4475
52. Acharya, N., Haracska, L., Johnson, R. E., Unk, I., Prakash, S., and Prakash, L. (2005) Mol. Cell. Biol. 25, 9734-9740
53. D'Souza, S., and Walker, G. C. (2006) Mol. Cell. Biol. 26, 8173-8182
54. D'Souza, S., Waters, L. S., and Walker, G. C. (2008) DNA Repair 7, 1455-1470
55. Acharya, N., Haracska, L., Prakash, S., and Prakash, L. (2007) Mol. Cell. Biol. 27, 8401-8408