Low-energy electron-induced DNA damage: Effect of base sequence in oligonucleotide trimers

Journal of the American Chemical Society

Volumn 132, Issue 15, 2010, Pages 5422-5427

  Li, Zejun ^a   Cloutier, Pierre ^a   Sanche, Léon ^a,b   Wagner, J Richard ^a  

^a UNIVERSITÉ DE SHERBROOKE   (Canada)

^b OPEN UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BASE SEQUENCES; BOND-BREAKING; C-O BOND CLEAVAGE; CONDENSED PHASE; DNA DAMAGES; GUANINE; HPLC-UV ANALYSIS; IRRADIATED SAMPLES; LOW ENERGY ELECTRONS; MODEL COMPOUND; NON-VOLATILE; NORMAL BASIS; NUCLEOBASES; PHOSPHODIESTER BONDS; PHOSPHODIESTERS; TERMINAL SITE; TOTAL ENERGY;

CHROMATOGRAPHIC ANALYSIS; ELECTRON AFFINITY; GENES; IONIZING RADIATION; OLIGONUCLEOTIDES;

DNA;

DNA BASE;

ARTICLE; DNA CLEAVAGE; DNA DAMAGE; DNA DETERMINATION; DNA SEQUENCE; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; IONIZING RADIATION; IRRADIATION; ULTRAVIOLET IRRADIATION;

BASE SEQUENCE; DNA DAMAGE; ELECTRONS; OLIGONUCLEOTIDES;

EID: 77951050251     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja9099505     Document Type: Article

References (54)

1. Pimblott, S. M. and LaVerne, J. A. Radiat. Phys. Chem. 2007, 76, 1244-1247
2. Denifl, S., Ptasinska, S., Cingel, M., Matejcik, S., Scheier, P., and Mark, T. D. Chem. Phys. Lett. 2003, 377, 74-80
3. Zheng, Y., Cloutier, P., Hunting, D. J., Wagner, J. R., and Sanche, L. J. Am. Chem. Soc. 2004, 126, 1002-1003
4. Li, Z., Zheng, Y., Cloutier, P., Sanche, L., and Wagner, J. R. J. Am. Chem. Soc. 2008, 130, 5612-5613
5. Zheng, Y., Cloutier, P., Hunting, D. J., Sanche, L., and Wagner, J. R. J. Am. Chem. Soc. 2005, 127, 16592-16598
6. Huels, M. A., Hahndorf, I., Illenberger, E., and Sanche, L. J. Chem. Phys. 1998, 108, 1309-1312
7. Denifl, S., Ptasinska, S., Hrusak, J., Scheier, P., and Mark, T. D. J. Phys. Chem. A 2004, 108, 6562-6569
8. Abdoul-Carime, H., Gohlke, S., and Illenberger, E. Phys. Rev. Lett. 2004, 92, 168103
9. Ptasinska, S., Denifl, S., Scheier, P., and Mark, T. D. J. Chem. Phys. 2004, 120, 8505-8511
10. For a review, see Sanche, L. In Wiley Series on Reactive Intermediates in Chemistry and Biology: Entitled Radicals in Nucleic Acids; Greenberg, M., Ed.; John Wiley & Sons: New York, 2009.
11. Aflatooni, K., Gallup, G. A., and Burrow, P. D. J. Phys. Chem. A 1998, 102, 6205-6207
12. Simons, J. and Jordan, K. D. Chem. Rev. 1987, 87, 535-555
13. Aboul-Carime, H., Cloutier, P., and Sanche, L. Radiat. Res. 2001, 155, 625-633
14. Dugal, P.-C., Abdoul-Carime, H., and Sanche, L. J. Phys. Chem. B 2000, 104, 5610-5617
15. Huels, M. A., Boudaiffa, B., Cloutier, P., Hunting, D., and Sanche, L. J. Am. Chem. Soc. 2003, 125, 4467-4477
16. Antic, D., Parenteau, L., and Sanche, L. J. Phys. Chem. B 2002, 104, 4711-4716
17. Pan, X., Cloutier, P., Hunting, D., and Sanche, L. Phys. Rev. Lett. 2003, 90, 208102
18. Boudaiffa, B., Cloutier, P., Hunting, D., Huels, M. A., and Sanche, L. Science 2000, 287, 1658-1659
19. Boudaiffa, B., Hunting, D., Cloutier, P., Huels, M. A., and Sanche, L. Int. J. Radiat. Biol. 2000, 76, 1209-1221
20. Cai, Z., Cloutier, P., Hunting, D., and Sanche, L. J. Phys. Chem. B 2005, 109, 4796-4800
21. Cai, Z., Cloutier, P., Hunting, D., and Sanche, L. Radiat. Res. 2006, 165, 365-371
22. Panajotovic, R., Martin, F., Cloutier, P., Hunting, D., and Sanche, L. Radiat. Res. 2006, 165, 452-459
23. Zheng, Y., Cloutier, P., Wagner, J. R., and Sanche, L. Rev. Sci. Instrum. 2004, 75, 4534-4540
24. Li, X., Sevilla, M. D., and Sanche, L. J. Am. Chem. Soc. 2003, 125, 13668-13669
25. Barrios, R., Skurski, P., and Simons, J. J. Phys. Chem. B 2002, 106, 7991-7994
26. Berdys, J., Anusiewicz, I., Skurski, P., and Simons, J. J. Am. Chem. Soc. 2004, 126, 6441-6447
27. Berdys, J., Skurski, P., and Simons, J. J. Phys. Chem. B 2004, 108, 5800-5805
28. Berdys, J., Anusiewicz, I., Skurski, P., and Simons, J. J. Phys. Chem. A 2004, 108, 2999-3005
29. Martin, F., Burrow, P. D., Cai, Z., Cloutier, P., Hunting, D. J., and Sanche, L. Phys. Rev. Lett. 2004, 93 068101
30. Zheng, Y., Cloutier, P., Hunting, D. J., Wagner, J. R., and Sanche, L. J. Chem. Phys. 2006, 124 064710
31. Fasman, G. D. Handbook of Biochemistry and Molecular Biology, 3rd ed.; CRC Press:: Boca Raton, FL, 1995.
32. Meesungnoen, J., Jay-Gerin, J.-P., Filali-Mouhim, A., and Mankhetkorn, S. Radiat. Res. 2002, 158, 657-660
33. Leclerc, G., Goulet, T., Cloutier, P., Jay-Gerin, J.-P., and Sanche, L. J. Phys. Chem. 1987, 91, 4999-5001
34. Bass, A. D. and Sanche, L. Radiat. Environ. Biophys. 1998, 37, 243-257
35. White, J. S. Source Book of Enzymes; CRC Press: Boca Raton, FL, 1997.
36. Caron, L. G. and Sanche, L. Phys. Rev. A 2005, 72 032726
37. Caron, L. G. and Sanche, L. Phys. Rev. A 2004, 70 032719
38. Caron, L. G. and Sanche, L. Phys. Rev. Lett. 2003, 91, 113201
39. Seidel, C. A. M., Schulz, A., and Sauer, M. H. M. J. Phys. Chem. 1996, 100, 5541-5553
40. Richardson, N. A., Gu, J., Wang, S., Xie, Y., and Schaefer, H. F. J. Am. Chem. Soc. 2004, 126, 4404-4411
41. Li, X., Cai, Z., and Sevilla, M. D. J. Phys. Chem. A 2002, 106, 1596-1603
42. von Sonntag, C. The Chemical Basis of Radiation Biology; Taylor and Francis: London, 1987.
43. Kobytecka, M., Leszczynski, J., and Rak, J. J. Am. Chem. Soc. 2008, 130, 15683-15687
44. Voityuk, A. A., Michel-Beyerle, M.-E., and Rösch, N. Chem. Phys. Lett. 2001, 342, 231-238
45. Li, X., Sanche, L., and Sevilla, M. D. Radiat. Res. 2006, 165, 721-729
46. Gu, J., Xie, Y., and Schaefer, H. F. J. Am. Chem. Soc. 2005, 127, 1053-1057
47. Anusiewicz, I., Berdys, J., Sobczyk, M., Skurski, P., and Simons, J. J. Phys. Chem. A 2004, 108, 11381-11387
48. Gu, J., Xie, Y., and Schaefer, H. F. Nucleic Acids Res. 2007, 35, 5165-5172
49. Ray, S. G., Daube, S. S., and Naaman, R. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 15-19
50. Schyman, P. and Laaksonen, A. J. Am. Chem. Soc. 2008, 130, 12254-12255
51. Gu, J., Wang, J., and Leszczynski, J. J. Am. Chem. Soc. 2006, 128, 9322-9323
52. Bao, X., Wang, J., Gu, J., and Leszczynski, J. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 5658-5663
53. Kumar, A. and Sevilla, M. D. J. Phys. Chem. B 2007, 111, 5464-5474
54. Solomun, T., Seitz, H., and Sturm, H. J. Phys. Chem. B 2009, 113, 11557-11559