COE: A general approach for efficient genome-wide two-locus epistasis test in disease association study

Journal of Computational Biology

Volumn 17, Issue 3, 2010, Pages 401-415

  Zhang, Xiang ^a   Pan, Feng ^a   Xie, Yuying ^b   Zou, Fei ^c   Wang, Wei ^a  

^a Brooks Computer Science Building   (United States)

^b UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

^c IL   (United States)

Author keywords

Algorithms; Computational molecular biology; Dynamic programming; Genomics; Sequence analysis

Indexed keywords

ALGORITHM; ANIMAL; BIOLOGY; CHI SQUARE DISTRIBUTION; CONFERENCE PAPER; GENE LOCUS; GENETIC ASSOCIATION; GENETIC EPISTASIS; GENETIC PREDISPOSITION; GENETICS; HUMAN; METHODOLOGY; MOUSE; SINGLE NUCLEOTIDE POLYMORPHISM;

ALGORITHMS; ANIMALS; CHI-SQUARE DISTRIBUTION; COMPUTATIONAL BIOLOGY; EPISTASIS, GENETIC; GENETIC LOCI; GENETIC PREDISPOSITION TO DISEASE; GENOME-WIDE ASSOCIATION STUDY; HUMANS; MICE; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 77950798630     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2009.0155     Document Type: Conference Paper

References (33)

1. Balding, D.J. 2006. Nat. Rev. Genet. 7, 781-791.
2. Bohringer, S., Hardt, C., Miterski, B., et al. 2003. Eur. J. Hum. Genet. 11, 573-584.
3. Boyd, S., and Vandenberghe, L. 2004. Convex Optimization. Cambridge University Press, New York.
4. Carlborg, O., Andersson, L., and Kinghom, B. 2000. Genetics 155, 2003-2010.
5. Carlson, C.S., Eberle, M.A., Kruglyak, L., et al. 2004. Nature 429, 446-452.
6. Chi, P.B., et al. 2006. Genet. Epidemiol. 30, 609-619.
7. Cordell, H.J. 2002. Hum. Mol. Genet. 11, 2463-2468.
8. Doerge, R.W. 2002. Nat. Rev. Genet. 3, 43-52.
9. Dong, C., et al. 2008. Eur. J. Hum. Genet. 16, 229-235.
10. Erlichman, C., and Sargent, D.J. 2004. N. Engl. J. Med. 351, 391-392.
11. Evans, D.M., Marchini, J., Morris, A.P., et al. 2006. PLoS Genet. 2, e157.
12. Halperin, E., Kimmel, G., and Shamir, R. 2005. Proc. ISMB.
13. Herbert, A., et al. 2006. Science 312, 279-284.
14. Hoh, J., and Ott, J. 2003. Nat. Rev. Genet. 4, 701-709.
15. Kirman, I., Huang, E.H., and Whelan, R.L. 2004. Surgery 135, 313-318.
16. Nelson, M.R., Kardia, S.L., Ferrell, R.E., et al. 2001. Genome Res. 11, 458-470.
17. Ozaki, K., et al. 2002. Nat. Genet. 32, 650-654.
18. Pagano, M., and Gauvreau, K. 2000. Principles of Biostatistics. Duxbury Press, Pacific Grove, CA.
19. Ritchie, M.D., Hahn, L.W., Roodi, N., et al. 2001. Am. J. Hum. Genet. 69, 138-147.
20. Roberts, A., McMillan, L., Wang, W., et al. 2007. Proc. ISMB.
21. Roses, A. 2003. Nat. Genet. 33, Suppl. 2, 217.
22. Ruivenkamp, C.A., Csikos, T., Klous, A.M., et al. 2003. Oncogene 22, 7258-7260.
23. Saxena, R., et al. 2007. Science 316, 1331-1336.
24. Scuteri, A., et al. 2007. PLoS Genet. 3, 7.
25. Sebastiani, P., Lazarus, R., Weiss, S.T., et al. 2003. Proc. Natl. Acad. Sci. USA 100, 9900-9905.
26. Segre, D., DeLuna, A., Church, G.M., et al. 2005. Nat. Genet. 37, 77-83.
27. Storey, J., Akey, J., and Kruglyak, L. 2005. PLoS Biol. 8, e267.
28. Thomas, D.C. 2004. Statistical Methods in Genetic Epidemiology. Oxford Univeristy Press, Oxford, UK.
29. Wade, C.M., and Daly, M.J. 2005. Nat. Genet. 37, 1175-1180.
30. Weedon, M.N., et al. 2007. Nat. Genet. 39, 1245-1250.
31. Zhang, X., Zou, F., and Wang, W. 2008. KDD.
32. Zhang, X., Zou, F., and Wang, W. 2009. PSB.
33. Zhao, J., Boerwinkle, E., and Xiong, M. 2005. Am. J. Hum. Genet. 77, 27-40.