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Volumn 11, Issue 1, 2010, Pages 14-23

Small RNA diversity in plants and its impact in development

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MICRORNA; SMALL INTERFERING RNA;

EID: 77950646014     PISSN: 13892029     EISSN: None     Source Type: Journal    
DOI: 10.2174/138920210790217918     Document Type: Review
Times cited : (74)

References (113)
  • 3
    • 48249126207 scopus 로고    scopus 로고
    • Reconstituting plant miRNA biogenesis
    • Zhu, J.K. Reconstituting plant miRNA biogenesis. Proc. Natl. Acad. Sci. USA, 2008, 105, 9851-9852.
    • Proc. Natl. Acad. Sci. USA, 2008 , vol.105 , pp. 9851-9852
    • Zhu, J.K.1
  • 7
    • 33745279055 scopus 로고    scopus 로고
    • Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning
    • Henderson, I.R.; Zhang, X.; Lu, C.; Johnson, L.; Meyers, B.C.; Green, P.J.; Jacobsen, S.E. Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat. Genet., 2006, 38, 721-725.
    • (2006) Nat. Genet. , vol.38 , pp. 721-725
    • Henderson, I.R.1    Zhang, X.2    Lu, C.3    Johnson, L.4    Meyers, B.C.5    Green, P.J.6    Jacobsen, S.E.7
  • 9
    • 33646830110 scopus 로고    scopus 로고
    • Conservation and divergence of plant microRNA genes
    • Zhang, B.; Pan, X.; Cannon, C.H.; Cobb, G.P.; Anderson, T.A. Conservation and divergence of plant microRNA genes. Plant J., 2006, 46, 243-259.
    • (2006) Plant J. , vol.46 , pp. 243-259
    • Zhang, B.1    Pan, X.2    Cannon, C.H.3    Cobb, G.P.4    Anderson, T.A.5
  • 10
    • 43449118038 scopus 로고    scopus 로고
    • Evolution of plant microRNAs and their targets
    • Axtell, M.J.; Bowman, J.L. Evolution of plant microRNAs and their targets. Trends Plant Sci., 2008, 13, 343-349.
    • (2008) Trends Plant Sci. , vol.13 , pp. 343-349
    • Axtell, M.J.1    Bowman, J.L.2
  • 12
    • 33745271035 scopus 로고    scopus 로고
    • Functions of microRNAs and related small RNAs in plants
    • published erratum appears in Nat. Genet., 2006, 38, 850
    • Mallory, A.C.; Vaucheret, H. Functions of microRNAs and related small RNAs in plants [published erratum appears in Nat. Genet., 2006, 38, 850]. Nat. Genet., 2006, 38(Suppl), S31-S36.
    • (2006) Nat. Genet. , vol.38 , Issue.SUPPL.
    • Mallory, A.C.1    Vaucheret, H.2
  • 13
    • 51749093103 scopus 로고    scopus 로고
    • Degradation of microRNAs by a family of exoribonucleases in Arabidopsis
    • Ramachandran, V.; Chen, X. Degradation of microRNAs by a family of exoribonucleases in Arabidopsis. Science, 2008, 321, 1490-1492.
    • (2008) Science , vol.321 , pp. 1490-1492
    • Ramachandran, V.1    Chen, X.2
  • 14
    • 34250651337 scopus 로고    scopus 로고
    • Cell biology of the Arabidopsis nuclear siRNA pathway for RNA-directed chromatin modification
    • Pikaard, C.S. Cell biology of the Arabidopsis nuclear siRNA pathway for RNA-directed chromatin modification. Cold Spring Harb. Symp. Quant. Biol., 2006, 71, 473-480.
    • (2006) Cold Spring Harb. Symp. Quant. Biol. , vol.71 , pp. 473-480
    • Pikaard, C.S.1
  • 16
    • 55449131096 scopus 로고    scopus 로고
    • Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
    • Wierzbicki, A.T.; Haag, J.R.; Pikaard, C.S. Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell, 2008, 135, 635-648.
    • (2008) Cell , vol.135 , pp. 635-648
    • Wierzbicki, A.T.1    Haag, J.R.2    Pikaard, C.S.3
  • 17
    • 33750435234 scopus 로고    scopus 로고
    • Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation
    • Qi, Y.; He, X.; Wang, X.J.; Kohany, O.; Jurka, J.; Hannon, G.J. Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation. Nature, 2006, 443, 1008-1012.
    • (2006) Nature , vol.443 , pp. 1008-1012
    • Qi, Y.1    He, X.2    Wang, X.J.3    Kohany, O.4    Jurka, J.5    Hannon, G.J.6
  • 18
    • 33947586544 scopus 로고    scopus 로고
    • Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing
    • Zheng, X.; Zhu, J.; Kapoor, A.; Zhu, J.K. Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing. EMBO J., 2007, 26, 1691-1701.
    • (2007) EMBO J. , vol.26 , pp. 1691-1701
    • Zheng, X.1    Zhu, J.2    Kapoor, A.3    Zhu, J.K.4
  • 20
    • 58849120615 scopus 로고    scopus 로고
    • PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit
    • Lahmy, S.; Pontier, D.; Cavel, E.; Vega, D.; El-Shami, M.; Kanno, T.; Lagrange, T. PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit. Proc. Natl. Acad. Sci. USA, 2009, 106, 941-946.
    • Proc. Natl. Acad. Sci. USA, 2009 , vol.106 , pp. 941-946
    • Lahmy, S.1    Pontier, D.2    Cavel, E.3    Vega, D.4    El-Shami, M.5    Kanno, T.6    Lagrange, T.7
  • 21
    • 46149085626 scopus 로고    scopus 로고
    • Small RNA metabolism in Arabidopsis
    • Ramachandran, V.; Chen, X. Small RNA metabolism in Arabidopsis. Trends Plant Sci., 2008, 13, 368-374.
    • (2008) Trends Plant Sci. , vol.13 , pp. 368-374
    • Ramachandran, V.1    Chen, X.2
  • 22
    • 17444430392 scopus 로고    scopus 로고
    • MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants
    • Allen, E.; Xie, Z.; Gustafson, A.M.; Carrington, J.C. microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell, 2005, 121, 207-221.
    • (2005) Cell , vol.121 , pp. 207-221
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Carrington, J.C.4
  • 24
    • 29244490062 scopus 로고    scopus 로고
    • Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis
    • Borsani, O.; Zhu, J.; Verslues, P.E.; Sunkar, R.; Zhu, J.K. Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell, 2005, 123, 1279-1291.
    • (2005) Cell , vol.123 , pp. 1279-1291
    • Borsani, O.1    Zhu, J.2    Verslues, P.E.3    Sunkar, R.4    Zhu, J.K.5
  • 27
    • 40249088355 scopus 로고    scopus 로고
    • Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis
    • Jin, H.; Vacic, V.; Girke, T.; Lonardi, S.; Zhu, J.K. Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis. BMC Mol. Biol., 2008, 9, 6.
    • (2008) BMC Mol. Biol. , vol.9 , pp. 6
    • Jin, H.1    Vacic, V.2    Girke, T.3    Lonardi, S.4    Zhu, J.K.5
  • 28
    • 61449191758 scopus 로고    scopus 로고
    • Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa
    • Zhou, X.; Sunkar, R.; Jin, H.; Zhu, J.K.; Zhang, W. Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa. Genome Res., 2009, 19, 70-78.
    • (2009) Genome Res. , vol.19 , pp. 70-78
    • Zhou, X.1    Sunkar, R.2    Jin, H.3    Zhu, J.K.4    Zhang, W.5
  • 29
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: Target recognition and regulatory functions
    • Bartel, D.P. MicroRNAs: target recognition and regulatory functions. Cell, 2009, 136, 215-233.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 30
    • 1942435249 scopus 로고    scopus 로고
    • Micromanagers of gene expression: The potentially widespread influence of metazoan microRNAs
    • Bartel, D.P.; Chen, C.Z. Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs. Nat. Rev. Genet., 2004, 5, 396-400.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 396-400
    • Bartel, D.P.1    Chen, C.Z.2
  • 31
    • 1642366133 scopus 로고    scopus 로고
    • A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development
    • Chen, X. A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science, 2004, 303, 2022-2025.
    • (2004) Science , vol.303 , pp. 2022-2025
    • Chen, X.1
  • 33
    • 58849093262 scopus 로고    scopus 로고
    • Revisiting the principles of microRNA target recognition and mode of action
    • Brodersen, P.; Voinnet, O. Revisiting the principles of microRNA target recognition and mode of action. Nat. Rev. Mol. Cell Biol., 2009, 10, 141-148.
    • (2009) Nat. Rev. Mol. Cell Biol. , vol.10 , pp. 141-148
    • Brodersen, P.1    Voinnet, O.2
  • 36
    • 0035984059 scopus 로고    scopus 로고
    • Endogenous and silencing-associated small RNAs in plants
    • Llave, C.; Kasschau, K.D.; Rector, M.A.; Carrington, J.C. Endogenous and silencing-associated small RNAs in plants. Plant Cell, 2002, 14, 1605-1619.
    • (2002) Plant Cell , vol.14 , pp. 1605-1619
    • Llave, C.1    Kasschau, K.D.2    Rector, M.A.3    Carrington, J.C.4
  • 37
    • 0036645146 scopus 로고    scopus 로고
    • MicroRNAs in plants
    • published erratum appears in Genes Dev., 2002, 16, 2313
    • Reinhart, B.J.; Weinstein, E.G.; Rhoades, M.W.; Bartel, B.; Bartel, D.P. MicroRNAs in plants [published erratum appears in Genes Dev., 2002, 16, 2313]. Genes Dev., 2002, 16, 1616-1626.
    • (2002) Genes Dev. , vol.16 , pp. 1616-1626
    • Reinhart, B.J.1    Weinstein, E.G.2    Rhoades, M.W.3    Bartel, B.4    Bartel, D.P.5
  • 38
    • 0037015239 scopus 로고    scopus 로고
    • CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana
    • Park, W.; Li, J.; Song, R.; Messing, J.; Chen, X. CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr. Biol., 2002, 12, 1484-1495.
    • (2002) Curr. Biol. , vol.12 , pp. 1484-1495
    • Park, W.1    Li, J.2    Song, R.3    Messing, J.4    Chen, X.5
  • 39
    • 4043074968 scopus 로고    scopus 로고
    • Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
    • Sunkar, R.; Zhu, J.K. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell, 2004, 16, 2001-2019.
    • (2004) Plant Cell , vol.16 , pp. 2001-2019
    • Sunkar, R.1    Zhu, J.K.2
  • 41
    • 2942672580 scopus 로고    scopus 로고
    • Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    • Jones-Rhoades, M.W.; Bartel, D.P. Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol. Cell, 2004, 14, 787-799.
    • (2004) Mol. Cell , vol.14 , pp. 787-799
    • Jones-Rhoades, M.W.1    Bartel, D.P.2
  • 44
    • 33845688601 scopus 로고    scopus 로고
    • A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    • Rajagopalan, R.; Vaucheret, H.; Trejo, J.; Bartel, D.P. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev., 2006, 20, 3407-3425.
    • (2006) Genes Dev. , vol.20 , pp. 3407-3425
    • Rajagopalan, R.1    Vaucheret, H.2    Trejo, J.3    Bartel, D.P.4
  • 47
    • 58149200922 scopus 로고    scopus 로고
    • AthaMap, integrating transcriptional and post-transcriptional data
    • Bülow, L.; Engelmann, S.; Schindler, M.; Hehl, R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic Acids Res., 2009, 37, D983- D986.
    • (2009) Nucleic Acids Res. , vol.37
    • Bülow, L.1    Engelmann, S.2    Schindler, M.3    Hehl, R.4
  • 48
    • 50649110065 scopus 로고    scopus 로고
    • A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    • Zhu, Q.H.; Spriggs, A.; Matthew, L.; Fan, L.; Kennedy, G.; Gubler, F.; Helliwell, C. A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains. Genome Res., 2008, 18, 1456-1465.
    • (2008) Genome Res. , vol.18 , pp. 1456-1465
    • Zhu, Q.H.1    Spriggs, A.2    Matthew, L.3    Fan, L.4    Kennedy, G.5    Gubler, F.6    Helliwell, C.7
  • 50
    • 34347355440 scopus 로고    scopus 로고
    • miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
    • Molnar, A.; Schwach, F.; Studholme, D.J.; Thuenemann, E.C.; Baulcombe, D.C. miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature, 2007, 447, 1126-1129.
    • (2007) Nature , vol.447 , pp. 1126-1129
    • Molnar, A.1    Schwach, F.2    Studholme, D.J.3    Thuenemann, E.C.4    Baulcombe, D.C.5
  • 53
    • 12744262431 scopus 로고    scopus 로고
    • Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
    • Wang, X.J.; Reyes, J.L.; Chua, N.H.; Gaasterland, T. Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets. Genome Biol., 2004, 5, R65.
    • (2004) Genome Biol. , vol.5
    • Wang, X.J.1    Reyes, J.L.2    Chua, N.H.3    Gaasterland, T.4
  • 54
    • 43449091567 scopus 로고    scopus 로고
    • Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome
    • Addo-Quaye, C.; Eshoo, T.W.; Bartel, D.P.; Axtell, M.J. Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr. Biol., 2008, 18, 758-762.
    • (2008) Curr. Biol. , vol.18 , pp. 758-762
    • Addo-Quaye, C.1    Eshoo, T.W.2    Bartel, D.P.3    Axtell, M.J.4
  • 56
    • 3242691607 scopus 로고    scopus 로고
    • AtXRN4 Degrades mRNA in Arabidopsis and Its Substrates Include Selected miRNA Targets
    • Souret, F.F.; Kastenmayer, J.P.; Green, P.J. AtXRN4 Degrades mRNA in Arabidopsis and Its Substrates Include Selected miRNA Targets. Mol. Cell, 2004, 15, 173-183.
    • (2004) Mol. Cell , vol.15 , pp. 173-183
    • Souret, F.F.1    Kastenmayer, J.P.2    Green, P.J.3
  • 58
    • 22144464033 scopus 로고    scopus 로고
    • Cloning and characterization of microRNAs from rice
    • Sunkar, R.; Girke, T.; Jain, P.K.; Zhu, J.K. Cloning and characterization of microRNAs from rice. Plant Cell, 2005, 17, 1397-1411.
    • (2005) Plant Cell , vol.17 , pp. 1397-1411
    • Sunkar, R.1    Girke, T.2    Jain, P.K.3    Zhu, J.K.4
  • 59
    • 33748288105 scopus 로고    scopus 로고
    • Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
    • Luo, Y.C.; Zhou, H.; Li, Y.; Chen, J.Y.; Yang, J.H.; Chen, Y.Q.; Qu, L.H. Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development. FEBS Lett., 2006, 580, 5111-5116.
    • (2006) FEBS Lett. , vol.580 , pp. 5111-5116
    • Luo, Y.C.1    Zhou, H.2    Li, Y.3    Chen, J.Y.4    Yang, J.H.5    Chen, Y.Q.6    Qu, L.H.7
  • 62
    • 42149157716 scopus 로고    scopus 로고
    • Identification of novel and candidate miRNAs in rice by high throughput sequencing
    • Sunkar, R.; Zhou, X.; Zheng, Y.; Zhang, W.; Zhu, J.K. Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC Plant Biol., 2008, 8, 25.
    • (2008) BMC Plant Biol. , vol.8 , pp. 25
    • Sunkar, R.1    Zhou, X.2    Zheng, Y.3    Zhang, W.4    Zhu, J.K.5
  • 65
    • 63349083143 scopus 로고    scopus 로고
    • Characterization and expression profiles of miRNAs in rice seeds
    • Xue, L.J.; Zhang, J.J.; Xue, H.W. Characterization and expression profiles of miRNAs in rice seeds. Nucleic Acids Res., 2009, 37, 916-930.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 916-930
    • Xue, L.J.1    Zhang, J.J.2    Xue, H.W.3
  • 67
    • 39549115890 scopus 로고    scopus 로고
    • Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
    • Yao, Y.; Guo, G.; Ni, Z.; Sunkar, R.; Du, J.; Zhu, J.K.; Sun, Q. Cloning and characterization of microRNAs from wheat (Triticum aestivum L.) Genome Biol., 2007, 8, R96.
    • (2007) Genome Biol. , vol.8
    • Yao, Y.1    Guo, G.2    Ni, Z.3    Sunkar, R.4    Du, J.5    Zhu, J.K.6    Sun, Q.7
  • 68
    • 27744471144 scopus 로고    scopus 로고
    • Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    • Lu, S.; Sun, Y.H.; Shi, R.; Clark, C.; Li, L.; Chiang, V.L. Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell, 2005, 17, 2186-2203.
    • (2005) Plant Cell , vol.17 , pp. 2186-2203
    • Lu, S.1    Sun, Y.H.2    Shi, R.3    Clark, C.4    Li, L.5    Chiang, V.L.6
  • 69
    • 47249095055 scopus 로고    scopus 로고
    • Stress-responsive microRNAs in Populus
    • Lu, S.; Sun, Y.H.; Chiang, V.L. Stress-responsive microRNAs in Populus. Plant J., 2008, 55, 131-151.
    • (2008) Plant J. , vol.55 , pp. 131-151
    • Lu, S.1    Sun, Y.H.2    Chiang, V.L.3
  • 71
    • 50849113068 scopus 로고    scopus 로고
    • Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
    • Zhang, J.; Zeng, R.; Chen, J.; Liu, X.; Liao, Q. Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill. Gene, 2008, 423, 1-7.
    • (2008) Gene , vol.423 , pp. 1-7
    • Zhang, J.1    Zeng, R.2    Chen, J.3    Liu, X.4    Liao, Q.5
  • 72
    • 53549106068 scopus 로고    scopus 로고
    • Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
    • Moxon, S.; Jing, R.; Szittya, G.; Schwach, F.; Rusholme Pilcher, R.L.; Moulton, V.; Dalmay, T. Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome Res., 2008, 18, 1602-1609.
    • (2008) Genome Res. , vol.18 , pp. 1602-1609
    • Moxon, S.1    Jing, R.2    Szittya, G.3    Schwach, F.4    Rusholme Pilcher, R.L.5    Moulton, V.6    Dalmay, T.7
  • 73
    • 56649120500 scopus 로고    scopus 로고
    • Identification of soybean microRNAs and their targets
    • Zhang, B.; Pan, X.; Stellwag, E.J. Identification of soybean microRNAs and their targets. Planta, 2008, 229, 161-182.
    • (2008) Planta , vol.229 , pp. 161-182
    • Zhang, B.1    Pan, X.2    Stellwag, E.J.3
  • 74
    • 38149052111 scopus 로고    scopus 로고
    • MicroRNAs in the Drosophila bithorax complex
    • Bender, W. MicroRNAs in the Drosophila bithorax complex. Genes Dev., 2008, 22, 14-19.
    • (2008) Genes Dev. , vol.22 , pp. 14-19
    • Bender, W.1
  • 75
    • 38149022486 scopus 로고    scopus 로고
    • Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci
    • Tyler, D.M.; Okamura, K.; Chung, W.J.; Hagen, J.W.; Berezikov, E.; Hannon, G.J.; Lai, E.C. Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci. Genes Dev., 2008, 22, 26-36.
    • (2008) Genes Dev. , vol.22 , pp. 26-36
    • Tyler, D.M.1    Okamura, K.2    Chung, W.J.3    Hagen, J.W.4    Berezikov, E.5    Hannon, G.J.6    Lai, E.C.7
  • 76
    • 58249118839 scopus 로고    scopus 로고
    • High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
    • Szittya, G.; Moxon, S.; Santos, D.M.; Jing, R.; Fevereiro, M.P.; Moulton, V.; Dalmay, T. High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families. BMC Genomics, 2008, 9, 593.
    • (2008) BMC Genomics , vol.9 , pp. 593
    • Szittya, G.1    Moxon, S.2    Santos, D.M.3    Jing, R.4    Fevereiro, M.P.5    Moulton, V.6    Dalmay, T.7
  • 77
    • 70350669278 scopus 로고    scopus 로고
    • Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    • Oline Sept 18
    • Lelandais-Briére, C.; Naya, L.; Sallet, E.; Calenge, F.; Frugier, F.; Hartmann, C.; Gouzy, J.; Crespi, M. Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules. Plant Cell, 2009, Oline Sept 18.
    • (2009) Plant Cell
    • Lelandais-Briére, C.1    Naya, L.2    Sallet, E.3    Calenge, F.4    Frugier, F.5    Hartmann, C.6    Gouzy, J.7    Crespi, M.8
  • 78
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by RNA sequencing
    • Nagalakshmi, U.; Wang, Z.; Waern, K.; Shou, C.; Raha, D.; Gerstein, M.; Snyder, M. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science, 2008, 320, 1344-1349.
    • (2008) Science , vol.320 , pp. 1344-1349
    • Nagalakshmi, U.1    Wang, Z.2    Waern, K.3    Shou, C.4    Raha, D.5    Gerstein, M.6    Snyder, M.7
  • 79
    • 52449125294 scopus 로고    scopus 로고
    • Submergenceresponsive MicroRNAs are potentially involved in the regulation of morphological and metabolic adaptations in maize root cells
    • Zhang, Z.; Wei, L.; Zou, X.; Tao, Y.; Liu, Z.; Zheng, Y. Submergenceresponsive MicroRNAs are potentially involved in the regulation of morphological and metabolic adaptations in maize root cells. Ann. Bot. (Lond)., 2008, 102, 509-519.
    • (2008) Ann. Bot. (Lond) , vol.102 , pp. 509-519
    • Zhang, Z.1    Wei, L.2    Zou, X.3    Tao, Y.4    Liu, Z.5    Zheng, Y.6
  • 80
    • 44349101865 scopus 로고    scopus 로고
    • miR-Q: A novel quantitative RT-PCR approach for the expression profiling of small RNA molecules such as miRNAs in a complex sample
    • Sharbati-Tehrani, S.; Kutz-Lohroff, B.; Bergbauer, R.; Scholven, J.; Einspanier, R. miR-Q: a novel quantitative RT-PCR approach for the expression profiling of small RNA molecules such as miRNAs in a complex sample. BMC Mol. Biol., 2008, 9, 34.
    • (2008) BMC Mol. Biol. , vol.9 , pp. 34
    • Sharbati-Tehrani, S.1    Kutz-Lohroff, B.2    Bergbauer, R.3    Scholven, J.4    Einspanier, R.5
  • 81
    • 58349096093 scopus 로고    scopus 로고
    • Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types
    • Kawashima, C.G.; Yoshimoto, N.; Maruyama-Nakashita, A.; Tsuchiya, Y.N.; Saito, K.; Takahashi, H.; Dalmay, T. Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types. Plant J., 2009, 57, 313-321.
    • (2009) Plant J. , vol.57 , pp. 313-321
    • Kawashima, C.G.1    Yoshimoto, N.2    Maruyama-Nakashita, A.3    Tsuchiya, Y.N.4    Saito, K.5    Takahashi, H.6    Dalmay, T.7
  • 82
    • 24944510549 scopus 로고    scopus 로고
    • MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development
    • Guo, H.S.; Xie, Q.; Fei, J.F.; Chua, N.H. MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development. Plant Cell, 2005, 17, 1376-1386.
    • (2005) Plant Cell , vol.17 , pp. 1376-1386
    • Guo, H.S.1    Xie, Q.2    Fei, J.F.3    Chua, N.H.4
  • 83
    • 4243111895 scopus 로고    scopus 로고
    • Modulation of floral development by a gibberellin-regulated microRNA
    • Achard, P.; Herr, A.; Baulcombe, D.C.; Harberd, N.P. Modulation of floral development by a gibberellin-regulated microRNA. Development, 2004, 131, 3357-3365.
    • (2004) Development , vol.131 , pp. 3357-3365
    • Achard, P.1    Herr, A.2    Baulcombe, D.C.3    Harberd, N.P.4
  • 84
    • 24944493388 scopus 로고    scopus 로고
    • MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes
    • Mallory, A.C.; Bartel, D.P.; Bartel, B. MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Plant Cell, 2005, 17, 1360-1375.
    • (2005) Plant Cell , vol.17 , pp. 1360-1375
    • Mallory, A.C.1    Bartel, D.P.2    Bartel, B.3
  • 86
    • 55049139974 scopus 로고    scopus 로고
    • The role of microRNAs and other endogenous small RNAs in plant stress responses
    • Shukla, L.; Chinnusamy, V.; Sunkar, R. The role of microRNAs and other endogenous small RNAs in plant stress responses. Biochim. Biophys. Acta, 2008, 1779, 743-748.
    • (2008) Biochim. Biophys. Acta , vol.1779 , pp. 743-748
    • Shukla, L.1    Chinnusamy, V.2    Sunkar, R.3
  • 87
    • 57749110646 scopus 로고    scopus 로고
    • The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance
    • Li, W.X.; Oono, Y.; Zhu, J.; He, X.J.; Wu, J.M.; Iida, K.; Lu, X.Y.; Cui, X.; Jin, H.; Zhu, J.K. The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. Plant Cell, 2008, 20, 2238-2251.
    • (2008) Plant Cell , vol.20 , pp. 2238-2251
    • Li, W.X.1    Oono, Y.2    Zhu, J.3    He, X.J.4    Wu, J.M.5    Iida, K.6    Lu, X.Y.7    Cui, X.8    Jin, H.9    Zhu, J.K.10
  • 88
    • 34047234690 scopus 로고    scopus 로고
    • Characterization and identification of microRNA core promoters in four model species
    • Zhou, X.; Ruan, J.; Wang, G.; Zhang, W. Characterization and identification of microRNA core promoters in four model species. PLoS Comput. Biol., 2007, 3, e37.
    • (2007) PLoS Comput. Biol. , vol.3
    • Zhou, X.1    Ruan, J.2    Wang, G.3    Zhang, W.4
  • 89
    • 0036834508 scopus 로고    scopus 로고
    • DICER-LIKE1: Blind men and elephants in Arabidopsis development
    • Schauer, S.E.; Jacobsen, S.E.; Meinke, D.W.; Ray, A. DICER-LIKE1: blind men and elephants in Arabidopsis development. Trends Plant Sci., 2002, 7, 487-491.
    • (2002) Trends Plant Sci. , vol.7 , pp. 487-491
    • Schauer, S.E.1    Jacobsen, S.E.2    Meinke, D.W.3    Ray, A.4
  • 90
    • 35348853247 scopus 로고    scopus 로고
    • MicroRNA-mediated regulation of stomatal development in Arabidopsis
    • published erratum appears Plant Cell, 2007, 19, 3831
    • Kutter, C.; Schob, H.; Stadler, M.; Meins, F. Jr.; Si-Ammour, A. MicroRNA-mediated regulation of stomatal development in Arabidopsis [published erratum appears Plant Cell, 2007, 19, 3831]. Plant Cell, 2007, 19, 2417-2429.
    • (2007) Plant Cell , vol.19 , pp. 2417-2429
    • Kutter, C.1    Schob, H.2    Stadler, M.3    Meins Jr., F.4    Si-Ammour, A.5
  • 94
    • 1542377275 scopus 로고    scopus 로고
    • Spatially restricted microRNA directs leaf polarity through ARGONAUTE1
    • Kidner, C.A.; Martienssen, R.A. Spatially restricted microRNA directs leaf polarity through ARGONAUTE1. Nature, 2004, 428, 81-84.
    • (2004) Nature , vol.428 , pp. 81-84
    • Kidner, C.A.1    Martienssen, R.A.2
  • 95
    • 1542317414 scopus 로고    scopus 로고
    • microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity
    • Juarez, M.T.; Kui, J.S.; Thomas, J.; Heller, B.A.; Timmermans, M.C. microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity. Nature, 2004, 42, 84-88.
    • (2004) Nature , vol.42 , pp. 84-88
    • Juarez, M.T.1    Kui, J.S.2    Thomas, J.3    Heller, B.A.4    Timmermans, M.C.5
  • 97
    • 4444275405 scopus 로고    scopus 로고
    • MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems
    • Laufs, P.; Peaucelle, A.; Morin, H.; Traas, J. MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems. Development, 2004, 131, 4311-4322.
    • (2004) Development , vol.131 , pp. 4311-4322
    • Laufs, P.1    Peaucelle, A.2    Morin, H.3    Traas, J.4
  • 98
    • 60149086351 scopus 로고    scopus 로고
    • Origin, biogenesis, and activity of plant microRNAs
    • Voinnet, O. Origin, biogenesis, and activity of plant microRNAs. Cell, 2009, 136, 669-687.
    • (2009) Cell , vol.136 , pp. 669-687
    • Voinnet, O.1
  • 99
    • 27744596243 scopus 로고    scopus 로고
    • Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis
    • Wang, J.W.; Wang, L.J.; Mao, Y.B.; Cai, W.J.; Xue, H.W.; Chen, X.Y. Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis. Plant Cell, 2005, 17, 2204-2216.
    • (2005) Plant Cell , vol.17 , pp. 2204-2216
    • Wang, J.W.1    Wang, L.J.2    Mao, Y.B.3    Cai, W.J.4    Xue, H.W.5    Chen, X.Y.6
  • 100
    • 33645528966 scopus 로고    scopus 로고
    • Post-transcriptional small RNA pathways in plants: Mechanisms and regulations
    • Vaucheret, H. Post-transcriptional small RNA pathways in plants: mechanisms and regulations. Genes Dev., 2006, 20, 759-771.
    • (2006) Genes Dev. , vol.20 , pp. 759-771
    • Vaucheret, H.1
  • 101
    • 27844526222 scopus 로고    scopus 로고
    • A miRNA involved in phosphate-starvation response in Arabidopsis
    • Fujii, H.; Chiou, T.J.; Lin, S.I.; Aung, K.; Zhu, J.K. A miRNA involved in phosphate-starvation response in Arabidopsis. Curr. Biol., 2005, 15, 2038-2043.
    • (2005) Curr. Biol. , vol.15 , pp. 2038-2043
    • Fujii, H.1    Chiou, T.J.2    Lin, S.I.3    Aung, K.4    Zhu, J.K.5
  • 102
    • 58349096093 scopus 로고    scopus 로고
    • Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types
    • Kawashima, C.G.; Yoshimoto, N.; Maruyama-Nakashita, A.; Tsuchiya, Y.N.; Saito, K.; Takahashi, H.; Dalmay, T. Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types. Plant J., 2009, 57, 313-321.
    • (2009) Plant J. , vol.57 , pp. 313-321
    • Kawashima, C.G.1    Yoshimoto, N.2    Maruyama-Nakashita, A.3    Tsuchiya, Y.N.4    Saito, K.5    Takahashi, H.6    Dalmay, T.7
  • 103
    • 47049120791 scopus 로고    scopus 로고
    • MicroRNA-mediated systemic downregulation of copper protein expression in response to low copper availability in Arabidopsis
    • Abdel-Ghany, S.E.; Pilon, M. MicroRNA-mediated systemic downregulation of copper protein expression in response to low copper availability in Arabidopsis. J. Biol. Chem., 2008, 283, 15932-15945.
    • (2008) J. Biol. Chem. , vol.283 , pp. 15932-15945
    • Abdel-Ghany, S.E.1    Pilon, M.2
  • 105
    • 41849109875 scopus 로고    scopus 로고
    • MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis
    • Pant, B.D.; Buhtz, A.; Kehr, J.; Scheible, W.R. MicroRNA399 is a longdistance signal for the regulation of plant phosphate homeostasis. Plant J., 2008, 53, 731-738.
    • (2008) Plant J. , vol.53 , pp. 731-738
    • Pant, B.D.1    Buhtz, A.2    Kehr, J.3    Scheible, W.R.4
  • 106
    • 33745960196 scopus 로고    scopus 로고
    • PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants
    • Bari, R.; Datt Pant, B.; Stitt, M.; Scheible, W.R. PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol., 2006, 141, 988-999.
    • (2006) Plant Physiol. , vol.141 , pp. 988-999
    • Bari, R.1    Datt Pant, B.2    Stitt, M.3    Scheible, W.R.4
  • 108
    • 52449125294 scopus 로고    scopus 로고
    • Submergenceresponsive MicroRNAs are potentially involved in the regulation of morphological and metabolic adaptations in maize root cells
    • Lond
    • Zhang, Z.; Wei, L.; Zou, X.; Tao, Y.; Liu, Z.; Zheng, Y. Submergenceresponsive MicroRNAs are potentially involved in the regulation of morphological and metabolic adaptations in maize root cells. Ann. Bot. (Lond)., 2008, 102, 509-519.
    • (2008) Ann. Bot. , vol.102 , pp. 509-519
    • Zhang, Z.1    Wei, L.2    Zou, X.3    Tao, Y.4    Liu, Z.5    Zheng, Y.6
  • 109
    • 57749199958 scopus 로고    scopus 로고
    • Differential expression of miRNAs in response to salt stress in maize roots
    • Ding, D.; Zhang, L.; Wang, H.; Liu, Z.; Zhang, Z.; Zheng, Y. Differential expression of miRNAs in response to salt stress in maize roots. Ann. Bot. (Lond)., 2009, 103, 29-38.
    • (2009) Ann. Bot. (Lond) , vol.103 , pp. 29-38
    • Ding, D.1    Zhang, L.2    Wang, H.3    Liu, Z.4    Zhang, Z.5    Zheng, Y.6
  • 110
    • 58749089536 scopus 로고    scopus 로고
    • De novo organ formation from differentiated cells: Root nodule organogenesis
    • published erratum appears in Sci. Signal., 2009, 2, er1
    • Crespi, M.; Frugier, F. De novo organ formation from differentiated cells: root nodule organogenesis [published erratum appears in Sci. Signal., 2009, 2, er1]. Sci. Signal., 2008, 1, re11.
    • (2008) Sci. Signal. , vol.1
    • Crespi, M.1    Frugier, F.2
  • 113
    • 24944443408 scopus 로고    scopus 로고
    • Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes
    • Williams, L.; Grigg, S.P.; Xie, M.; Christensen, S.; Fletcher, J.C. Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes. Development, 2005, 132, 3657-3668.
    • (2005) Development , vol.132 , pp. 3657-3668
    • Williams, L.1    Grigg, S.P.2    Xie, M.3    Christensen, S.4    Fletcher, J.C.5


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