Phylogenetic relationships among species and genera of Lycoperdaceae based on ITS and LSU sequence data from north European taxa

Mycological Research

Volumn 112, Issue 1, 2008, Pages 4-22

  Larsson, Ellen ^a   Jeppson, Mikael ^b  

^a UNIVERSITY OF GOTHENBURG   (Sweden)

^b NONE   (Sweden)

Author keywords

Agaricales; Basidiomycota; Gasteromycetes; Molecular systematics; Taxonomy

Indexed keywords

FUNGAL DNA; RIBOSOMAL SPACER DNA; RNA 23S; RNA 5S;

CLADISTICS; FUNGUS; IDENTIFICATION METHOD; MOLECULAR ANALYSIS; MORPHOLOGY; NEW SPECIES; TAXONOMY;

AGARICALES; ARTICLE; CLASSIFICATION; CYTOLOGY; DNA SEQUENCE; EUROPE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ALIGNMENT;

AGARICALES; BASE SEQUENCE; DNA, FUNGAL; DNA, RIBOSOMAL SPACER; EUROPE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 23S; RNA, RIBOSOMAL, 5S; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

AGARICALES; BASIDIOMYCOTA; BOVISTA; BOVISTELLA; CALVATIA; HANDKEA; LIMOSA; LYCOPERDACEAE; LYCOPERDON; MORGANELLA (FUNGUS); MYCENASTRUM CORIUM; VASCELLUM;

EID: 39649118230     PISSN: 09537562     EISSN: 14698102     Source Type: Journal    
DOI: 10.1016/j.mycres.2007.10.018     Document Type: Article

References (72)

1. Bates ST, 2004. Arizona members of the Geastraceae and Lycoperdaceae (Basidiomycota, Fungi). PhD thesis, Arizona State University.
2. Bisht D., Sharma J.R., Kreisel H., and Das K. A new species and a new record of Lycoperdaceae from India. Mycotaxon 95 (2006) 91-96
3. Binder M., Hibbett D.S., Larsson K.-H., Larsson E., Langer E., and Langer G. The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (homobasidiomycetes). Systematics and Biodiversity 3 (2005) 113-157
4. Bronchart R., and Demoulin V. Ultratructure de la paroi sporale des Gastéromycètes Mycenastrum corium et Abstoma reticulatum en rapport avec leur position systématique. Bulletin de la Société Royal de Botanique de Belgique 106 (1973) 267-272
5. Calonge F.D., and Demoulin V. Les Gastéromycètes d'Espagne. Bulletin Trimestriel de la Societé Mycologique de France 94 (1975) 247-292
6. Calonge F.D., and Martín M.P. Notes on the taxonomical delimitation in the genera Calvatia, Gastropila and Langermannia (Gasteromycetes). Boletín de la Sociedad Micológica de Madrid 14 (1990) 181-190
7. Calonge F.D. El género Bovista Pers.:Pers. (Gasteromycetes) en la Península Ibérica e Islas Baleares. Boletín de la Sociedad Micológica de Madrid 17 (1992) 101-113
8. Calonge FD, 1998. Flora Mycológica Ibérica. Vol. 3. Gasteromycetes I. Lycoperdales, Nidulariales, Phallales, Sclerodermatales, Tulostomatales. J. Cramer, Stuttgart.
9. Demoulin V. Gastéromycètes de Belgique: Sclerodermatales, Tulostomatales, Lycoperdales. Bulletin du Jardin Botanique National de Belgique 38 (1968) 1-101
10. Demoulin V. Les Gastéromycètes. Les Naturalistes Belges 50 (1969) 225-270
11. Demoulin V, 1972a. Le Genre Lycoperdon en Europe et en Amérique du Nord. Étude Taxonomique et Phytogéographique. PhD thesis, Université de Liège.
12. Demoulin V. Espèces nouvelles ou méconnues du genre Lycoperdon (Gastéromycètes). Lejeunia, nova series 62 (1972) 1-28
13. Demoulin V. Species of Lycoperdon with a setose exoperidium. Mycotaxon 3 (1976) 275-296
14. Demoulin V. The typification of Lycoperdon described by Peck and Morgan. Beihefte zur Sydowia 8 (1979) 139-151
15. Demoulin V., and Lange M. Calvatia turneri (Ellis et Everh.) Demoulin et M. Lange, comb. nov., the correct name for C. tatrensis Hollós. Mycotaxon 38 (1990) 221-226
16. Dring D.M. Gasteromycetes. In: Ainsworth G.C., Sparrow F.K., and Sussman A.S. (Eds). The Fungi-an Advanced Treatise vol. IVB (1973), Academic Press, London
17. Eckblad F.-E. The Gasteromycetes of Norway. The epigean genera. Nytt Magasin for Botanikk 4 (1955) 19-86
18. Fischer E. Unterklasse Eubasidii, Reihe Gastromyceteae. In: Engler A., and Prantl K. (Eds). Die natürlichen Pflanzenfamilien, Band 7a (1933), Wilh. Engelmann, Leipzig
19. Gardes M., and Bruns T.D. ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizas and rusts. Molecular Ecology 2 (1993) 113-118
20. Hallgrímsson H. Íslenzkt svappatal V: Kólfsveppir. Draft made for the Extra Nordic Mycological Congress in Iceland 1993 (1993), Náttúrufræ{eth}istofnun Nor{eth}urlands, Akureyri
21. Hansen L. A Danish find of Mycenastrum corium with notes on its anatomy. Botanisk Tidskrift 58 (1962) 204-212
22. Hibbett D.S., Binder M., Bischoff J.F., Blackwell M., Cannon P.F., Eriksson O.E., Huhndorf S., James T., Kirk P.M., Lücking R., Lumbsch T., Lutzoni F., Matheny P.B., Mclaughlin D.J., Powell M.J., Redhead S., Schoch C.L., Spatafora J.W., Stalpers J.A., Vilgalys R., Aime M.C., Aptroot A., Bauer R., Begerow D., Benny G.L., Castlebury L.A., Crous P.W., Cheng D.Y., Gams W., Geiser D.M., Griffith G.W., Gueidan C., Hawksworth D.L., Hestmark G., Hosaka K., Humber R.A., Hyde K., Ironside J.E., Kõljalg U., Kurtzman C.P., Henrik L.K., Lichtwardt R., Longcore J., Miadlikowska J., Miller A., Marc M.J., Mozley-Standridge S., Oberwinkler F., Parmasto E., Reeb V., Rogers J.D., Roux C., Ryvarden L., Paulo S.J., Schüssler A., Sugiyama J., Thorn R.G., Tibell L., Untereiner W.A., Walker C., Wang Z., Weir A., Weiss M., White M.M., Winka K., Jian Y.Y., and Zhang N. A higher-level phylogenetic classification of the Fungi. Mycological Research 111 (2007) 509-547
23. Hibbett D.S., Pine E.M., Langer E., Langer G., and Donoghue M.J. Evolution of gilled mushrooms and puffballs inferred from ribosomal DNA sequences. Proceedings of the National Academy of Sciences, USA 94 (1997) 12002-12006
24. Hibbett D.S., and Thorn R.G. Basidiomycota: Homobasidiomycetes. In: McLaughlin D.J., McLaughlin E.G., and Lemke P.A. (Eds). The Mycota. Systematics and Evolution vol. 7 (2001), Springer-Verlag, New York 121-168 Part B
25. Hollós L, 1904. Die Gasteromyceten Ungarns. Oswald Weigel, Leipzig.
26. Hopple Jr. J.S., and Vilgalys R. Phylogenetic relationships in the mushroom genus Coprinus and dark-spored allies based on sequence data from the nuclear gene coding for the large ribosomal subunit RNA: divergent domains, outgroups, and monophyly. Molecular Phylogenetics and Evolution 13 (1999) 1-19
27. Jeppson M. Bovista cretacea and Bovista paludosa-en jämförelse mellan två närbesläktade äggsvampar. Jordstjärnan 20 (1999) 37-48
28. Jeppson M. Bovista aestivalis (Lycoperdaceae)-a survey of its occurrence in North Europe. Windahlia 24 (2001) 49-61
29. Jeppson M., and Demoulin V. Lycoperdon atropurpureum found in Sweden. Opera Botanica 100 (1989) 131-134
30. Katoh K., Misawa K., Kuma K., and Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on Fourier transform. Nucleic Acids Research 30 (2002) 3059-3066
31. Kirk P.M., Cannon P.F., David J.C., and Stalpers J.A. Ainsworth & Bisby's Dictionary of Fungi. 9th edn. (2001), CABI Publishing, Wallingford
32. Kreisel H. Die Lycoperdaceae der DDR. [Bibliotheca Mycologica 36] (1962), J. Cramer, Lehre
33. Kreisel H. Vorläufige Übersicht der Gattung Bovista Dill. ex Pers. Feddes Repertorium 69 (1964) 196-211
34. Kreisel H. Taxonomisch-Pflanzengeographische Monographie der Gattung Bovista. Beihefte zur Nova Hedwigia 25 (1967) 1-244
35. Kreisel H. Grundzüge eines natürlichen Systems der Pilze (1969), Verlag von J. Cramer, Lehre
36. Kreisel H. Gasteromyzeten aus Nepal. Khumbu Himal 6 (1969) 25-36
37. Kreisel H. Gasteromyzeten aus Nepal II. Feddes Repertorium 87 (1976) 83-107
38. Kreisel H. Pilzflora der Deutschen Demokratischen Republik (1987), Gustav Fischer Verlag, Jena
39. Kreisel H. Studies in the Calvatia complex (Basidiomycetes). Nova Hedwigia 48 (1989) 281-296
40. Kreisel H. An emendation and preliminary survey of the genus Calvatia (Gasteromycetidae). Persoonia 14 (1992) 431-439
41. Kreisel H. A key to Vascellum (Gasteromycetidae) with some floristic notes. Blyttia 51 (1993) 125-129
42. Kreisel H., and Calonge F.D. Calvatiella Chow, a synonym for Bovistella Morgan. Mycotaxon 48 (1993) 13-25
43. Kreisel H., and Dring D.M. An emendation of the genus Morganella Zeller (Lycoperdaceae). Feddes Repertorium 76 (1964) 109-122
44. Krüger D., and Kreisel H. Proposing Morganella subg. Apioperdon subg. nov. for the puffball Lycoperdon pyriforme. Mycotaxon 86 (2003) 169-177
45. Krüger D., Binder M., Fischer M., and Kreisel H. The Lycoperdales. A molecular approach to the systematics of some gasteroid mushrooms. Mycologia 93 (2001) 947-957
46. Lange M. Arctic Gasteromycetes. The Genus Bovista in Greenland and Svalbard. In: Laursen G.A., Ammirati J.F., and Redhead S.A. (Eds). Arctic and Alpine Mycology 2 (1987), Plenum Press, New York 261-271
47. Lange M. Arctic Gasteromycetes III. Calvatia in Greenland, Svalbard and Iceland. Nordic Journal of Botany 9 (1990) 525-546
48. Lange M. Classifications in the Calvatia group. Blyttia 3-4 (1993) 141-144
49. Larsson E., and Larsson K.-H. Phylogenetic relationships of russuloid basidiomycetes with emphasis on aphyllophoralean taxa. Mycologia 95 (2003) 1037-1065
50. Larsson K.-H., Larsson E., and Kõljalg U. High phylogenetic diversity among corticioid homobasidiomycetes. Mycological Research 108 (2004) 983-1002
51. Lebel T., Thompson D.K., and Udovicic F. Description and affinities of a new sequestrate fungus, Barcheria willisiana gen. et sp. nov. (Agaricales) from Australia. Mycological Research 108 (2004) 206-213
52. Martín M.P., and Jeppson M. An interesting Lycoperdon affin to L. ericaeum. Revista Catalana de Micologia 23 (2001) 47-50
53. Moncalvo J.-M., Vilgalys R., Redhead S.A., Johnson J.E., James T.Y., Aime M.C., Hofstetter V., Verduin S., Larsson E., Baroni T.J., Thorn R.G., Jacobsson S., Clemencon H., and Miller O.K. One hundred and seventeen clades of euagarics. Molecular Phylogenetics and Evolution 23 (2002) 357-400
54. Moyersoen B., and Demoulin V. Les Gastéromycètes de Corse: taxonomie, écologie, chorologie. Lejeunia, nova series 152 (1996) 1-128
55. Nylander J.A.A. MrModeltest v. 2. Evolutionary Biology Centre (2004), Uppsala University
56. Ortega A., and Buendía A.G. Contribución al catálogo micológico de Andalucía. II. Gasteromycetes. Boletín de la Sociedad Micológica de Madrid 13 (1989) 151-170
57. Ortega A., Buendía A.G., and Calonge F.D. Estudio de algunas especies interesantes del género Lycoperdon (Gasteromycetes) en España. Boletín de la Sociedad Micológica Castellana 9 (1985) 141-148
58. Pegler D.N., Læssøe T., and Spooner B. British Puffballs, Earthstars and Stinkhorns (1995), Royal Botanic Gardens, Kew
59. Perdeck A.C. Revision of the Lycoperdaceae of the Netherlands. Blumea 6 (1950) 480-516
60. Pilát A. Gasteromycetes - Houby-břichatky (1958), [Flora ČSR, B-1], Praha
61. Ponce de Leon P. Revision of the genus Vascellum (Lycoperdaceae). Fieldiana. Botany 32 (1970) 109-125
62. Redhead S.A., Vilgalys R., Moncalvo J.-M., Johnson J., and Hopple Jr. S. Proposal to conserve the name Psathyrella (Fr.) Quél. with a conserved type and to reject the name Pselliophora P. Karst. (Basidiomycetes: Psathyrellaceae). Taxon 50 (2001) 275-277
63. Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
64. Sarasini M. Gasteromiceti epigei (2005), Assoziazione Micologica Bresadola, Trento
65. Smith A.H. The genus Vascellum (Lycoperdaceae) in the United States. Travaux Mycologiques dédiés à R. Kühner (1974), Terreaux Freres, Villeurbanne 407-419
66. *and other methods). Version 4 (2003), Sinauer Associates, Sunderland, MA
67. Ulvinen T. Über einige Bovista und Lycoperdon-Arten in Finnland. Aquilo. Ser. Botanica 8 (1969) 25-41
68. Ulvinen T. Lycoperdaceae Chevall. In: Hansen L., and Knudsen H. (Eds). Nordic Macromycetes vol. 3 (1997), Svampetrykk, Copenhagen 332-340
69. Vellinga E.C. Genera in the family Agaricaceae: evidence from nrITS and nrLSU sequences. Mycological Research 108 (2004) 354-376
70. White T.J., Bruns T., Lee S., and Taylor J.W. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M.A., Gelfand D.H., Sininsky J.J., and White T.J. (Eds). PCR Protocols: a guide to methods and applications (1990), Academic Press, San Diego 315-322
71. Zeller S.M. Notes on certain Gasteromycetes, including two new orders. Mycologia 40 (1948) 639-668
72. Zeller S.M. Keys to the orders, families and genera of the Gasteromycetes. Mycologia 41 (1949) 36-58