메뉴 건너뛰기




Volumn 48, Issue 3, 1999, Pages 651-664

The role of subjectivity in reconstructing ancestral character states: A Bayesian approach to unknown rates, states, and transformation asymmetries

Author keywords

[No Author keywords available]

Indexed keywords


EID: 0033432230     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1080/106351599260229     Document Type: Article
Times cited : (78)

References (28)
  • 1
    • 0001185873 scopus 로고
    • An essay towards solving a problem in the doctrine of chances
    • BAYES, T. 1763. An essay towards solving a problem in the doctrine of chances. Philos. Trans. R. Soc. 53:370-418 (reprinted in 1958. Biometrika 45:293-315).
    • (1763) Philos. Trans. R. Soc. , vol.53 , pp. 370-418
    • Bayes, T.1
  • 2
    • 0002096055 scopus 로고
    • reprinted in
    • BAYES, T. 1763. An essay towards solving a problem in the doctrine of chances. Philos. Trans. R. Soc. 53:370-418 (reprinted in 1958. Biometrika 45:293-315).
    • (1958) Biometrika , vol.45 , pp. 293-315
  • 4
    • 0031880429 scopus 로고    scopus 로고
    • Reconstructing ancestral character states: A critical reappraisal
    • CUNNINGHAM, C. W., K. E. OMLAND, AND T. H. OAKLEY. 1998. Reconstructing ancestral character states: A critical reappraisal. Trends Ecol. Evol. 13:361-366.
    • (1998) Trends Ecol. Evol. , vol.13 , pp. 361-366
    • Cunningham, C.W.1    Omland, K.E.2    Oakley, T.H.3
  • 5
    • 0000228203 scopus 로고
    • A model of evolutionary change in proteins
    • (M. O. Dayhoff, ed.). National Biomedical Research Foundation, Silver Spring, Maryland
    • DAYHOFF, M. O., R. M. SCHWARTZ, AND B. C. ORCUTT. 1978. A model of evolutionary change in proteins. Pages 345-352 in Atlas of protein sequence and structure, vol. 5, suppl. 3 (M. O. Dayhoff, ed.). National Biomedical Research Foundation, Silver Spring, Maryland.
    • (1978) Atlas of Protein Sequence and Structure , vol.5 , Issue.SUPPL. 3 , pp. 345-352
    • Dayhoff, M.O.1    Schwartz, R.M.2    Orcutt, B.C.3
  • 6
    • 26444433586 scopus 로고
    • Bayesian statistical inference for psychological research
    • EDWARDS, W., H. LINDMAN, AND L. J. SAVAGE. 1963. Bayesian statistical inference for psychological research. Psych. Rev. 70:193-242.
    • (1963) Psych. Rev. , vol.70 , pp. 193-242
    • Edwards, W.1    Lindman, H.2    Savage, L.J.3
  • 7
    • 84959743928 scopus 로고
    • Methods for computing Wagner trees
    • FARRIS, J. S. 1970. Methods for computing Wagner trees. Syst. Zool. 19:83-92.
    • (1970) Syst. Zool. , vol.19 , pp. 83-92
    • Farris, J.S.1
  • 8
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • FELSENSTEIN, J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17:368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 10
    • 0028010308 scopus 로고
    • Using phylogenies to test hypotheses of adaptation: A critique of some current proposals
    • FRUMHOFF, P.C. AND H.K. REEVE. 1994. Using phylogenies to test hypotheses of adaptation: A critique of some current proposals. Evolution 48: 172-180.
    • (1994) Evolution , vol.48 , pp. 172-180
    • Frumhoff, P.C.1    Reeve, H.K.2
  • 11
    • 0002329356 scopus 로고
    • Minimum evolution fits to a given tree
    • HARTIGAN, J. A. 1973. Minimum evolution fits to a given tree. Biometrics 29:53-65.
    • (1973) Biometrics , vol.29 , pp. 53-65
    • Hartigan, J.A.1
  • 14
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • JONES, D. T., W. R. TAYLOR, AND J. M. THORNTON. 1992. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8:275-282.
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 15
    • 0029881442 scopus 로고    scopus 로고
    • Probabilistic reconstruction of ancestral protein sequences
    • KOSHI, J. M., AND R. A. GOLDSTEIN. 1996. Probabilistic reconstruction of ancestral protein sequences. J. Mol. Evol. 42:313-320.
    • (1996) J. Mol. Evol. , vol.42 , pp. 313-320
    • Koshi, J.M.1    Goldstein, R.A.2
  • 16
    • 0029468058 scopus 로고
    • Calculating the probability distributions of ancestral states reconstructed by parsimony on phylogenetic trees
    • MADDISON, W. P. 1995. Calculating the probability distributions of ancestral states reconstructed by parsimony on phylogenetic trees. Syst. Biol. 44:474-481.
    • (1995) Syst. Biol. , vol.44 , pp. 474-481
    • Maddison, W.P.1
  • 17
    • 0029149610 scopus 로고
    • Uncertainty in ancient phylogenies
    • SCHLUTER, D. 1995. Uncertainty in ancient phylogenies. Nature 377:108-109.
    • (1995) Nature , vol.377 , pp. 108-109
    • Schluter, D.1
  • 18
    • 0031417707 scopus 로고    scopus 로고
    • Likelihood of ancestor states in adaptive radiation
    • SCHLUTER, D., T. PRICE, A. Ø. MOOERS, AND D. LUDWIG. 1997. Likelihood of ancestor states in adaptive radiation. Evolution 51:1699-1711.
    • (1997) Evolution , vol.51 , pp. 1699-1711
    • Schluter, D.1    Price, T.2    Mooers, A.Ø.3    Ludwig, D.4
  • 19
    • 0029731915 scopus 로고    scopus 로고
    • The reconstruction of ancestral character states
    • SCHULTZ, T. R., R. B. COCROFT, AND G. A. CHURCHILL. 1996. The reconstruction of ancestral character states. Evolution 50:504-511.
    • (1996) Evolution , vol.50 , pp. 504-511
    • Schultz, T.R.1    Cocroft, R.B.2    Churchill, G.A.3
  • 21
    • 0000142497 scopus 로고
    • Reconstructing ancestral character states under Wagner parsimony
    • SWOFFORD, D. L., AND W. P. MADDISON. 1987. Reconstructing ancestral character states under Wagner parsimony. Math. Biosci. 87:199-229.
    • (1987) Math. Biosci. , vol.87 , pp. 199-229
    • Swofford, D.L.1    Maddison, W.P.2
  • 22
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • (D. M. Hillis, C. Moritz, and B. K. Madle, eds.). Sinauer Associates, Sunderland, Massachusetts
    • SWOFFORD, D. L., G. J. OLSEN, P. J. WADDELL, AND D. M. HILLIS. 1996. Phylogenetic inference. Pages 407-514 in Molecular systematics, 2nd edition (D. M. Hillis, C. Moritz, and B. K. Madle, eds.). Sinauer Associates, Sunderland, Massachusetts.
    • (1996) Molecular Systematics, 2nd Edition , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 23
    • 0002671410 scopus 로고
    • Some probabilistic and statistical problems in the analysis of DNA sequences
    • TAVARÉ, S. 1986. Some probabilistic and statistical problems in the analysis of DNA sequences. Lect. Math. Life Sci. 17:57-86.
    • (1986) Lect. Math. Life Sci. , vol.17 , pp. 57-86
    • Tavaré, S.1
  • 24
    • 0002053433 scopus 로고    scopus 로고
    • When is a phylogenetic test good enough?
    • The origin of biodiversity in insects: Phylogenetic tests of evolutionary scenarios (P. Grandcolas, ed.).
    • WENZEL, J.W. 1997. When is a phylogenetic test good enough? In The origin of biodiversity in insects: Phylogenetic tests of evolutionary scenarios (P. Grandcolas, ed.). Mém. Mus. Nat. Hist. Nat. 173:31-45.
    • (1997) Mém. Mus. Nat. Hist. Nat. , vol.173 , pp. 31-45
    • Wenzel, J.W.1
  • 25
    • 0001827042 scopus 로고
    • Comparing methods: Adaptive traits and tests of adaptation
    • (P. Eggleton and R. Vane-Wright, eds.). Harcourt Brace & Co., London
    • WENZEL, J. W., AND J. M. CARPENTER. 1994. Comparing methods: Adaptive traits and tests of adaptation. Pages 79-101 in Phylogenetics in ecology (P. Eggleton and R. Vane-Wright, eds.). Harcourt Brace & Co., London.
    • (1994) Phylogenetics in Ecology , pp. 79-101
    • Wenzel, J.W.1    Carpenter, J.M.2
  • 26
    • 0028820333 scopus 로고
    • A new method of inference of ancestral nucleotide and amino acid sequences
    • YANG, Z., S. KUMAR, AND M. NEI. 1995. A new method of inference of ancestral nucleotide and amino acid sequences. Genetics 141:1641-1650.
    • (1995) Genetics , vol.141 , pp. 1641-1650
    • Yang, Z.1    Kumar, S.2    Nei, M.3
  • 27
    • 0030957216 scopus 로고    scopus 로고
    • Detection of convergent and parallel evolution at the amino acid sequence level
    • ZHANG, J., AND S. KUMAR. 1997. Detection of convergent and parallel evolution at the amino acid sequence level. Mol. Biol. Evol. 14:527-536.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 527-536
    • Zhang, J.1    Kumar, S.2
  • 28
    • 0031025677 scopus 로고    scopus 로고
    • Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods
    • ZHANG, J., AND M. NEI. 1997. Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods. J. Mol. Evol. 44 (suppl. 1):S139-S146.
    • (1997) J. Mol. Evol. , vol.44 , Issue.SUPPL. 1
    • Zhang, J.1    Nei, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.