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Volumn 6, Issue 1, 2010, Pages 137-145

Rice-Arabidopsis FOX line screening with FT-NIR-based fingerprinting for GC-TOF/MS-based metabolite profiling

Author keywords

Arabidopsis; FOX hunting system; FT NIR; GC TOF MS; Metabolomics; O2PLS; Rice

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 77949281581     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-009-0182-2     Document Type: Article
Times cited : (22)

References (38)
  • 1
    • 33645673600 scopus 로고    scopus 로고
    • Metabolomic approaches reveal that phosphatidic and phosphatidyl glycerol phospholipids are major discriminatory non-polar metabolites in responses by Brachypodium distachyon to challenge by Magnaporthe grisea
    • Allwood, J. W., Ellis, D. I., Heald, J. K., Goodacre, R., & Mur, L. A. (2006). Metabolomic approaches reveal that phosphatidic and phosphatidyl glycerol phospholipids are major discriminatory non-polar metabolites in responses by Brachypodium distachyon to challenge by Magnaporthe grisea. Plant Journal, 46, 351-368.
    • (2006) Plant Journal , vol.46 , pp. 351-368
    • Allwood, J.W.1    Ellis, D.I.2    Heald, J.K.3    Goodacre, R.4    Mur, L.A.5
  • 3
    • 36949021555 scopus 로고    scopus 로고
    • Data integration in plant biology: The O2PLS method for combined modeling of transcript and metabolite data
    • Bylesjo, M., Eriksson, D., Kusano, M., Moritz, T., & Trygg, J. (2007). Data integration in plant biology: The O2PLS method for combined modeling of transcript and metabolite data. Plant Journal, 52, 1181-1191.
    • (2007) Plant Journal , vol.52 , pp. 1181-1191
    • Bylesjo, M.1    Eriksson, D.2    Kusano, M.3    Moritz, T.4    Trygg, J.5
  • 4
    • 60849098774 scopus 로고    scopus 로고
    • Integrated analysis of transcript, protein and metabolite data to study lignin biosynthesis in hybrid aspen
    • Bylesjo, M., Nilsson, R., Srivastava, V., et al. (2009). Integrated analysis of transcript, protein and metabolite data to study lignin biosynthesis in hybrid aspen. Journal of Proteome Research, 8, 199-210.
    • (2009) Journal of Proteome Research , vol.8 , pp. 199-210
    • Bylesjo, M.1    Nilsson, R.2    Srivastava, V.3
  • 5
    • 0032447801 scopus 로고    scopus 로고
    • Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
    • Clough, S. J., & Bent, A. F. (1998). Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant Journal, 16, 735-743.
    • (1998) Plant Journal , vol.16 , pp. 735-743
    • Clough, S.J.1    Bent, A.F.2
  • 7
    • 57149116166 scopus 로고    scopus 로고
    • CV-ANOVA for significance testing of PLS and OPLS® models
    • Eriksson, L., Trygg, J., & Wold, S. (2008). CV-ANOVA for significance testing of PLS and OPLS® models. Journal of Chemometrics, 22, 594-600.
    • (2008) Journal of Chemometrics , vol.22 , pp. 594-600
    • Eriksson, L.1    Trygg, J.2    Wold, S.3
  • 8
    • 0036007687 scopus 로고    scopus 로고
    • Metabolomics-the link between genotypes and phenotypes
    • Fiehn, O. (2002). Metabolomics-the link between genotypes and phenotypes. Plant Molecular Biology, 48, 155-171.
    • (2002) Plant Molecular Biology , vol.48 , pp. 155-171
    • Fiehn, O.1
  • 10
    • 0022059848 scopus 로고
    • Linearization and scatter-correction for near-infrared reflectance spectra of meat
    • Geladi, P., Macdougall, D., & Martens, H. (1985). Linearization and scatter-correction for near-infrared reflectance spectra of meat. Applied Spectroscopy, 39, 491-500.
    • (1985) Applied Spectroscopy , vol.39 , pp. 491-500
    • Geladi, P.1    Macdougall, D.2    Martens, H.3
  • 11
    • 33846857991 scopus 로고    scopus 로고
    • Curated genome annotation of Oryza sativa ssp japonica and comparative genome analysis with Arabidopsis thaliana-The Rice Annotation Project
    • Gojobori, T. (2007). Curated genome annotation of Oryza sativa ssp japonica and comparative genome analysis with Arabidopsis thaliana-The Rice Annotation Project. Genome Research, 17, 175-183.
    • (2007) Genome Research , vol.17 , pp. 175-183
    • Gojobori, T.1
  • 13
    • 33645070537 scopus 로고    scopus 로고
    • Plant metabolomics: From holistic hope, to hype, to hot topic
    • Hall, R. D. (2006). Plant metabolomics: From holistic hope, to hype, to hot topic. The New Phytologist, 169, 453-468.
    • (2006) The New Phytologist , vol.169 , pp. 453-468
    • Hall, R.D.1
  • 14
    • 0026726013 scopus 로고
    • Near-infrared spectrophotometry: A new dimension in clinical chemistry
    • Hall, J. W., & Pollard, A. (1992). Near-infrared spectrophotometry: A new dimension in clinical chemistry. Clinical Chemistry, 38, 1623-1631.
    • (1992) Clinical Chemistry , vol.38 , pp. 1623-1631
    • Hall, J.W.1    Pollard, A.2
  • 16
    • 33845523291 scopus 로고    scopus 로고
    • The FOX hunting system: An alternative gain-of-function gene hunting technique
    • Ichikawa, T., Nakazawa, M., Kawashima, M., et al. (2006). The FOX hunting system: An alternative gain-of-function gene hunting technique. Plant Journal, 48, 974-985.
    • (2006) Plant Journal , vol.48 , pp. 974-985
    • Ichikawa, T.1    Nakazawa, M.2    Kawashima, M.3
  • 18
    • 33747037187 scopus 로고    scopus 로고
    • The mitochondrial electron transfer flavoprotein complex is essential for survival of Arabidopsis in extended darkness
    • Ishizaki, K., Schauer, N., Larson, T. R., Graham, I. A., Fernie, A. R., & Leaver, C. J. (2006). The mitochondrial electron transfer flavoprotein complex is essential for survival of Arabidopsis in extended darkness. Plant Journal, 47, 751-760.
    • (2006) Plant Journal , vol.47 , pp. 751-760
    • Ishizaki, K.1    Schauer, N.2    Larson, T.R.3    Graham, I.A.4    Fernie, A.R.5    Leaver, C.J.6
  • 19
    • 0037624063 scopus 로고    scopus 로고
    • Collection, mapping, and annotation of over 28, 000 cDNA clones from Japonica rice
    • Kikuchi, S., Satoh, K., Nagata, T., et al. (2003). Collection, mapping, and annotation of over 28, 000 cDNA clones from Japonica rice. Science, 301, 376-379.
    • (2003) Science , vol.301 , pp. 376-379
    • Kikuchi, S.1    Satoh, K.2    Nagata, T.3
  • 20
    • 61349141170 scopus 로고    scopus 로고
    • Systematic approaches to using the FOX hunting system to identify useful rice genes
    • Kondou, Y., Higuchi, M., Takahashi, S., et al. (2009). Systematic approaches to using the FOX hunting system to identify useful rice genes. Plant Journal, 57, 883-894.
    • (2009) Plant Journal , vol.57 , pp. 883-894
    • Kondou, Y.1    Higuchi, M.2    Takahashi, S.3
  • 21
    • 33744935010 scopus 로고    scopus 로고
    • Determination of amino acid composition of soybeans (Glycine max) by near-infrared spectroscopy
    • Kovalenko, I. V., Rippke, G. R., & Hurburgh, C. R. (2006). Determination of amino acid composition of soybeans (Glycine max) by near-infrared spectroscopy. Journal of Agricultural and Food Chemistry, 54, 3485-3491.
    • (2006) Journal of Agricultural and Food Chemistry , vol.54 , pp. 3485-3491
    • Kovalenko, I.V.1    Rippke, G.R.2    Hurburgh, C.R.3
  • 22
    • 34447570857 scopus 로고    scopus 로고
    • Application of a metabolomic method combining one-dimensional and two-dimensional gas chromatography-time-of-flight/mass spectrometry to metabolic phenotyping of natural variants in rice
    • Kusano, M., Fukushima, A., Kobayashi, M., et al. (2007). Application of a metabolomic method combining one-dimensional and two-dimensional gas chromatography-time-of-flight/mass spectrometry to metabolic phenotyping of natural variants in rice. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences, 855, 71-79.
    • (2007) Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences , vol.855 , pp. 71-79
    • Kusano, M.1    Fukushima, A.2    Kobayashi, M.3
  • 23
  • 24
    • 0042066362 scopus 로고    scopus 로고
    • Classification and identification of Arabidopsis cell wall mutants using Fourier-Transform InfraRed (FT-IR) microspectroscopy
    • Mouille, G., Robin, S., Lecomte, M., Pagant, S., & Hofte, H. (2003). Classification and identification of Arabidopsis cell wall mutants using Fourier-Transform InfraRed (FT-IR) microspectroscopy. Plant Journal, 35, 393-404.
    • (2003) Plant Journal , vol.35 , pp. 393-404
    • Mouille, G.1    Robin, S.2    Lecomte, M.3    Pagant, S.4    Hofte, H.5
  • 25
    • 0035914542 scopus 로고    scopus 로고
    • Exploring the phenotypic expression of a regulatory proteome-altering gene by spectroscopy and chemometrics
    • Munck, L., Nielsen, J. P., Moller, B., et al. (2001). Exploring the phenotypic expression of a regulatory proteome-altering gene by spectroscopy and chemometrics. Analytica Chimica Acta, 446, 171-186.
    • (2001) Analytica Chimica Acta , vol.446 , pp. 171-186
    • Munck, L.1    Nielsen, J.P.2    Moller, B.3
  • 26
    • 34347250900 scopus 로고    scopus 로고
    • A multivariate screening strategy for investigating metabolic effects of strenuous physical exercise in human serum
    • Pohjanen, E., Thysell, E., Jonsson, P., et al. (2007). A multivariate screening strategy for investigating metabolic effects of strenuous physical exercise in human serum. Journal of Proteome Research, 6, 2113-2120.
    • (2007) Journal of Proteome Research , vol.6 , pp. 2113-2120
    • Pohjanen, E.1    Thysell, E.2    Jonsson, P.3
  • 27
    • 0035160371 scopus 로고    scopus 로고
    • A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations
    • Raamsdonk, L. M., Teusink, B., Broadhurst, D., et al. (2001). A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations. Nature Biotechnology, 19, 45-50.
    • (2001) Nature Biotechnology , vol.19 , pp. 45-50
    • Raamsdonk, L.M.1    Teusink, B.2    Broadhurst, D.3
  • 28
    • 33750093232 scopus 로고    scopus 로고
    • Statistically integrated metabonomic-proteomic studies on a human prostate cancer xenograft model in mice
    • Rantalainen, M., Cloarec, O., Beckonert, O., et al. (2006). Statistically integrated metabonomic-proteomic studies on a human prostate cancer xenograft model in mice. Journal of Proteome Research, 5, 2642-2655.
    • (2006) Journal of Proteome Research , vol.5 , pp. 2642-2655
    • Rantalainen, M.1    Cloarec, O.2    Beckonert, O.3
  • 30
    • 5144227035 scopus 로고    scopus 로고
    • Simultaneous determination of the main metabolites in rice leaves using capillary electrophoresis mass spectrometry and capillary electrophoresis diode array detection
    • Sato, S., Soga, T., Nishioka, T., & Tomita, M. (2004). Simultaneous determination of the main metabolites in rice leaves using capillary electrophoresis mass spectrometry and capillary electrophoresis diode array detection. Plant Journal, 40, 151-163.
    • (2004) Plant Journal , vol.40 , pp. 151-163
    • Sato, S.1    Soga, T.2    Nishioka, T.3    Tomita, M.4
  • 31
    • 0032312872 scopus 로고    scopus 로고
    • Nondestructive estimation of fatty acid composition in seeds of Brassica napus L. by near-infrared spectroscopy
    • Sato, T., Uezono, I., Morishita, T., & Tetsuka, T. (1998). Nondestructive estimation of fatty acid composition in seeds of Brassica napus L. by near-infrared spectroscopy. Journal of American Oil Chemists' Society, 75, 1877-1881.
    • (1998) Journal of American Oil Chemists' Society , vol.75 , pp. 1877-1881
    • Sato, T.1    Uezono, I.2    Morishita, T.3    Tetsuka, T.4
  • 32
    • 0042553279 scopus 로고
    • Smoothing and differentiation of data by simplified least squares procedures
    • Savitzky, A., & Golay, M. J. E. (1964). Smoothing and differentiation of data by simplified least squares procedures. Analytical Chemistry, 36, 1627-1639.
    • (1964) Analytical Chemistry , vol.36 , pp. 1627-1639
    • Savitzky, A.1    Golay, M.J.E.2
  • 33
    • 20044368617 scopus 로고    scopus 로고
    • GC-MS libraries for the rapid identification of metabolites in complex biological samples
    • Schauer, N., Steinhauser, D., Strelkov, S., et al. (2005). GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Letters, 579, 1332-1337.
    • (2005) FEBS Letters , vol.579 , pp. 1332-1337
    • Schauer, N.1    Steinhauser, D.2    Strelkov, S.3
  • 35
    • 0037371977 scopus 로고    scopus 로고
    • Assessment of H-1 NMR spectroscopy and multivariate analysis as a technique for metabolite fingerprinting of Arabidopsis thaliana
    • Ward, J. L., Harris, C., Lewis, J., & Beale, M. H. (2003). Assessment of H-1 NMR spectroscopy and multivariate analysis as a technique for metabolite fingerprinting of Arabidopsis thaliana. Phytochemistry, 62, 949-957.
    • (2003) Phytochemistry , vol.62 , pp. 949-957
    • Ward, J.L.1    Harris, C.2    Lewis, J.3    Beale, M.H.4
  • 36
    • 0141716301 scopus 로고    scopus 로고
    • Spectra-structure correlations in the near-infrared
    • J. Chalmers and P. Griffiths (Eds.), Chichester: Wiley
    • Weyer, L. G., & Lo, S.-C. (2002). Spectra-structure correlations in the near-infrared. In J. Chalmers & P. Griffiths (Eds.), Handbook of vibrational spectroscopy (pp. 1817-1837). Chichester: Wiley.
    • (2002) Handbook of Vibrational Spectroscopy , pp. 1817-1837
    • Weyer, L.G.1    Lo, S.-C.2
  • 37
    • 0003601238 scopus 로고    scopus 로고
    • NIR, IR, Raman, and UV-vis spectra featuring polymers and surfactants
    • J. Workman (Ed.), San Diego: Academic Press
    • Workman, J. (2000). NIR, IR, Raman, and UV-vis spectra featuring polymers and surfactants. In J. Workman (Ed.), Handbook of organic compounds (pp. 77-197). San Diego: Academic Press.
    • (2000) Handbook of Organic Compounds , pp. 77-197
    • Workman, J.1
  • 38
    • 0036802867 scopus 로고    scopus 로고
    • Early salt stress effects on the changes in chemical composition in leaves of ice plant and Arabidopsis. A Fourier transform infrared spectroscopy study
    • Yang, J., & Yen, H. E. (2002). Early salt stress effects on the changes in chemical composition in leaves of ice plant and Arabidopsis. A Fourier transform infrared spectroscopy study. Plant Physiology, 130, 1032-1042.
    • (2002) Plant Physiology , vol.130 , pp. 1032-1042
    • Yang, J.1    Yen, H.E.2


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