Classification and identification of Arabidopsis cell wall mutants using Fourier-Transform InfraRed (FT-IR) microspectroscopy

Plant Journal

Volumn 35, Issue 3, 2003, Pages 393-404

  Mouille, Grégory ^a   Robin, Stéphane ^a,b   Lecomte, Mannaïg ^a   Pagant, Silvère ^a   Höfte, Herman ^a  

^a CEMAGREF   (France)

^b AGROPARISTECH   (France)

Author keywords

Cell wall; Cellulose; FT IR microspectroscopy; Mutants

Indexed keywords

CELLS; CELLULOSE; FOURIER TRANSFORM INFRARED SPECTROSCOPY; POLYSACCHARIDES;

CELL WALL;

PLANTS (BOTANY);

ALLELES; ARABIDOPSIS; CELL WALL; CELLULOSE; CLUSTER ANALYSIS; GENES, PLANT; HYPOCOTYL; MUTATION; PECTINS; PHENOTYPE; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

CELLS; PLANTS; POLYSACCHARIDES;

ARABIDOPSIS;

EID: 0042066362     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.2003.01807.x     Document Type: Article

References (60)

1. Aeschbacher, R.A., Hauser, M.T., Feldmann, K.A. and Benfey, P.N. (1995) The SABRE gene is required for normal cell expansion in Arabidopsis. Genes Dev. 9, 330-340.
2. Anderberg, H.H. (1973) Cluster Analysis for Applications. New York: Academic Press, Inc.
3. Arioli, T., Peng, L., Betzner, A.S. et al. (1998) Molecular analysis of cellulose biosynthesis in Arabidopsis. Science, 279, 717-720.
4. Arnold, S.F. (1981) The Theory of Linear Models and Multivariate Analysis. New York: Wiley.
5. Baskin, T., Herth, W., Cork, A., Birch, R., Rolfe, B., Redmond, J. and Williamson, R. (1995) Radial swelling mutants deficient in cellulose biosynthesis. J. Cell. Bioch. Abstract supplement, 21A, 440.
6. Bechtold, N. and Pelletier, G. (1998) In planta Agrobacterium-mediated transformation of adult Arabidopsis thaliana plants by vacuum infiltration. Meth. Mol. Biol. 82, 259-266.
7. Benfey, P.N., Linstead, P.J., Roberts, K., Schiefelbein, J.W., Hauser, M.T. and Aeschbacher, R.A. (1993) Root development in Arabidopsis - four mutants with dramatically altered root morphogenesis. Development, 119, 57-70.
8. Bichet, A., Desnos, T., Turner, S., GrandJean, O. and Höfte, H. (2001) BOTERO1 is required for normal orientation of cortical microtubules and anisotropic cell expansion in Arabidopsis. Plant J. 25, 137-148.
9. Bonetta, D.T., Facette, M., Raab, T.K. and Somerville, C.R. (2002) Genetic dissection of plant cell-wall biosynthesis. Biochem. Soc. Trans. 30, 298-301.
10. Bonin, C.P., Potter, I., Vanzin, G.F. and Reiter, W.D. (1997) The MUR1 gene of Arabidopsis thaliana encodes an isoform of GDP-D- mannose-4,6-dehydratase, catalyzing the first step in the de novo synthesis of GDP-L-fucose. Proc. Natl. Acad. Sci. USA, 94, 2085-2090.
11. Bouton, S. (2001) Etude de la régulation transcriptionnelle de l'assimilation du nitrate chez Arabidopsis Thalina. Recherche de gènes régulateurs potentiels et caractérisation de mutants. PhD Thesis. University Paris XI, sciences de la vie.
12. Bouton, S., Leboeuf, E., Mouille, G., Leydecker, M.-T., Talbotec, J., Granier, F., Lahaye, M., Höfte, H. and Truong, H.N. (2002) QUASIMODO1 encodes a putative membrane-bound glycosyltransferase required for normal pectin synthesis and cell adhesion in Arabidopsis. Plant Cell, 14, 2577-2590.
13. Burger, E.G. and Reiter, W.D. (1999) The mur4 mutant of Arabidopsis is partially defective in the de novo synthesis of uridine diphospho L-arabinose. Plant Physiol. 121, 383-389.
14. Burk, D.H., Liu, B., Zhong, R., Morrison, W.H. and Ye, Z.H. (2001) A katanin-like protein regulates normal cell wall biosynthesis and cell elongation. Plant Cell, 13, 807-828.
15. Chen, L., Carpita, N.C., Reiter, W.D., Wilson, R.H., Jeffries, C. and McCann, M.C. (1998) A rapid method to screen for cell-wall mutants using discriminant analysis of Fourier-transform infrared spectra. Plant J. 16, 385-392.
16. Deng, X.W., Caspar, T. and Quail, P.H. (1991) Cop1 - a regulatory locus involved in light-controlled development and gene expression in Arabidopsis. Genes Dev. 5, 1172-1182.
17. Desnos, T., Orbovic, V., Bellini, C., Kronenberger, J., Caboche, M., Traas, J. and Hofte, H. (1996) Procuste1 mutants identify two distinct genetic pathways controlling hypocotyl cell elongation, respectively in dark- and light-grown Arabidopsis seedlings. Development, 122, 683-693.
18. Desprez, T., Vernhettes, V., Fagard, S., Refregier, G., Desnos, T., Aletti, E., Py, N., Pelletier, S. and Höfte, H. (2002) Resistance against herbicide isoxaben and cellulose deficiency caused by distinct mutations in same cellulose synthase isoform CESA6. Plant Physiol. 128, 482-490.
19. Eaton, E.A. (1999) GNU Octave Version 2.0.14. (http://www.octave.org).
20. Estelle, M.A. and Somerville, C.R. (1987) Auxin-resistant mutants of Arabidopsis thaliana with an altered morphology. Mol. Gen. Genet. 206, 200-206.
21. Fagard, M., Desnos, T., Desprez, T., Goubet, F., Refregier, G., Mouille, G., McCann, M., Rayon, C., Vernhettes, S. and Höfte, H. (2000) PROCUSTE1 encodes a cellulose synthase required for normal cell elongation specifically in roots and dark-grown hypocotyls of Arabidopsis. Plant Cell, 12, 2409-2423.
22. Gendreau, E., Traas, J., Desnos, T., Grandjean, O., Caboche, M. and Hofte, H. (1997) Cellular basis of hypocotyl growth in Arabidopsis thaliana. Plant Physiol. 114, 295-305.
23. Gillmor, C.S., Poindexter, P., Lorieau, J., Palcic, M.M. and Somerville, C. (2002) a-Glucosidase I is required for cellulose biosynthesis and morphogenesis in Arabidopsis. J. Cell. Biol. 156, 1003-1013.
24. Hand, D.J. (1981) Discrimination and Classification. New York: Wiley.
25. Hauser, M.T., Morikami, A. and Benfey, P.N. (1995) Conditional root expansion mutants of Arabidopsis. Development, 121, 1237-1252.
26. Helm, D., Labischinski, H., Schallehn, G. and Naumann, D. (1991) Classification and identification of bacteria by Fourier-transform infrared spectroscopy. J. Gen. Microbiol. 137, 69-79.
27. His, I., Driouich, A., Nicol, F., Jauneau, A. and Hofte, H. (2001) Altered pectin composition in primary cell walls of korrigan, a dwarf mutant of Arabidopsis deficient in a membrane-bound endo-β-1,4-glucanase. Planta, 212, 348-358.
28. Kacurakova, M., Capek, P., Sasinkova, V., Weller, N. and Ebringerova, A. (2000) FT-IR study of plant cell wall model compounds: pectic polysaccharides and hemicelluloses. Carbohydr. Polymers, 43, 195-203.
29. Kacurakova, M., Smith, A.C., Gidley, M.J. and Wilson, R.H. (2002) Molecular interaction in bacterial cellulose composites studied by 1D FT-IR and dynamic 2D FTIR spectroscopy. Carbohydr. Res. 337, 1145-1153.
30. Kemsley, E.K. (1998) Discriminant Analysis Of Spectroscopic Data. Chichester, UK: John Wiley and Sons.
31. Kurata, T. and Yamamoto, K.T. (1998) Petit1, a conditional growth mutant of Arabidopsis defective in sucrose-dependent elongation growth. Plant Physiol. 118, 793-801.
32. Lane, D.R., Wiedemeier, A., Peng, L. et al. (2001) Temperature-sensitive alleles of rsw2 link the korrigan endo-β-1,4-glucanase to cellulose synthesis and cytokinesis in Arabidopsis. Plant Physiol. 126, 278-288.
33. Lerouxel, O., Choo, T.S., Seveno, M., Usadel, B., Faye, L., Lerouge, P. and Pauly, P. (2002) Rapid structural phenotyping of plant cell wall mutants by enzymatic oligosaccharide fingerprinting. Plant Physiol. 130, 1754-1763.
34. Li, J.M., Nagpal, P., Vitart, V., Mcmorris, T.C. and Chory, J. (1996) A role for brassinosteroids in light-dependent development of Arabidopsis. Science, 272, 398-401.
35. Lukowitz, W., Nickle, T.C., Meinke, D.W., Last, R.L., Conklin, P.L. and Somerville, C.R. (2001) Arabidopsis cyt1 mutants are deficient in a mannose-1-phosphate guanylyltransferase and point to a requirement of N-linked glycosylation for cellulose biosynthesis. Proc. Natl. Acad. Sci. USA, 98, 2262-2267.
36. McCann, M.C., Chen, L., Roberts, K., Kemsley, E.K., Sene, S., Carpita, N.C., Stacey, N.J. and Wilson, R.H. (1997) Infrared microspectroscopy: sampling heterogeneity in plant cell wall composition and architecture. Physiol. Plant. 100, 729-738.
37. Nicol, F., His, I., Jauneau, A., Vernhettes, S., Canut, H. and Hofte, H. (1998) A plasma membrane-bound putative endo-1,4-beta-D-glucanase is required for normal wall assembly and cell elongation in Arabidopsis. EMBO J. 17, 5563-5576.
38. O'Neill, M.A., Eberhard, S., Albersheim, P. and Darvill, A.G. (2001) Requirement of borate cross-linking of cell wall rhamnogalacturonan II for Arabidopsis growth. Science, 294, 846-849.
39. Pagant, S., Bichet, A., Sugimoto, K., Lerouxel, O., Desprez, T., McCann, M., Lerouge, P., Vernhettes, S. and Höfte, H. (2002) KOBITO1 encodes a novel plasma membrane protein necessary for normal cellulose synthesis during cell expansion in Arabidopsis. Plant Cell, 14, 2001-2013.
40. Peng, L., Hocart, C.H., Redmond, J.W. and Williamson, R.E. (2000) Fractionation of carbohydrates in Arabidopsis root cell walls shows that three radial swelling loci are specifically involved in cellulose production. Planta, 211, 406-414.
41. Quail, P.H. (2002) Phytochrome photosensory signalling networks. Nat. Rev. Mol. Cell Biol. 3, 85-93.
42. Reiter, W.D., Chapple, C. and Somerville, C.R. (1997) Mutants of Arabidopsis thaliana with altered cell wall polysaccharide composition. Plant J. 12, 335-345.
43. Richmond, T.A. and Somerville, C.R. (2000) The cellulose synthase superfamily. Plant Physiol. 124, 495-498.
44. Robin, S., Lecomte, M., Höfte, H. and Mouille, G. (2003) A procedure for the clustering of cell wall mutants in the model plant Arabidopsis based o n Fourier transform infrared (FT-I R) spectroscopy. J. Appl. Stat. 30, 669-681.
45. Sarria, R., Wagner, T.A., O'Neill, M.A., Faik, A., Wilkerson, C.G., Keegstra, K. and Raikhel, N.V. (2001) Characterization of a family of Arabidopsis genes related to xyloglucan fucosyltransferase1. Plant Physiol. 127, 1595-1606.
46. SAS Institute (1999). SAS/STAT User's Guide. Cary: SAS Institute.
47. Scheible, W.R., Eshed, R., Richmond, T., Delmer, D. and Somerville, C. (2001) Modifications of cellulose synthase confer resistance to isoxaben and thiazolidinone herbicides in Arabidopsis Ixr1 mutants. Proc. Natl. Acad. Sci. USA, 98, 10079-10084.
48. Schindelman, G., Morikami, A., Jung, J., Baskin, T.I., Carpita, N.C., Derbyshire, P., McCann, M.C. and Benfey, P.N. (2001) COBRA encodes a putative GPI-anchored protein, which is polarly localized and necessary for oriented cell expansion in Arabidopsis. Genes Dev. 15, 1115-1127.
49. Sekkal, M., Dincq, V., Legrand, P. and Huvenne, J.P. (1995) Investigation of the glycosidic linkages in several oligosaccharides using FT-IR and FT Raman spectroscopies. J. Mol. Struct. 349, 349-352.
50. Sene, C., McCann, M.C., Wilson, R.H. and Grinter, R. (1994) Fourier-Transform Raman and Fourier-Transform Infrared Spectroscopy (An Investigation of Five Higher Plant Cell Walls and Their Components). Plant Physiol. 4, 1623-1631.
51. Sorensen, O., Pauly, M., Bush, M., Skjot, M., McCann, M.C., Borkhardt, B. and Ulvskov, P. (2000) Pectin engineering: modification of potato pectin by in vivo expression of an endo-1,4-beta-D-galactanase. Proc. Natl. Acad. Sci. USA, 97, 7639-7644.
52. Tintelnot, K., Haase, G., Seibold, M., Bergmann, F., Staemmler, M., Tatjana, F. and Naumann, D. (2000) Evaluation of phenotypic markers for selection and identification of Candida dubliniensis. J. Clin. Microbiol. 38, 1599-1608.
53. Traas, J., Bellini, C., Nacry, P., Kronenberger, J., Bouchez, D. and Caboche, M. (1995) Normal differentiation patterns in plants lacking microtubular preprophase bands. Nature, 375, 676-677.
54. Vanzin, G.F., Madson, M., Carpita, N.C., Raikhel, N.V., Keegstra, K. and Reiter, W.D. (2002) The mur2 mutant of Arabidopsis thaliana lacks fucosylated xyloglucan because of a lesion in fucosyltransferase AtFUT1. Proc. Natl. Acad. Sci. USA, 99, 3340-3345.
55. Willats, W.G., McCartney, L., Mackie, W. and Knox, J.P. (2001) Pectin: cell biology and prospects for functional analysis. Plant Mol. Biol. 47, 9-27.
56. Williamson, R.E., Burn, J.E. and Hocart, C.H. (2001) Cellulose synthesis: mutational analysis and genomic perspectives using Arabidopsis thaliana. Cell Mol. Life Sci. 58, 1475-1490.
57. Wilson, R.H., Smith, A.C., Kacurakova, M., Saunders, P.K., Wellner, N. and Waldron, K.W. (2000) The mechanical properties and molecular dynamics of plant cell wall polysaccharides studied by Fourier-transform infrared spectroscopy. Plant Physiol. 124, 397-405.
58. Zablackis, E., York, W.S., Pauly, M., Hantus, S., Reiter, W.D., Chapple, C.C.S., Albersheim, P. and Darvill, A. (1996) Substitution of L-fucose by L-galactose in cell walls of Arabidopsis mur1. Science, 272, 1808-1810.
59. Zhong, R., Kays, S.J., Schroeder, B.P. and Ye, Z.H. (2002) Mutation of a chitinase-like gene causes ectopic deposition of lignin, aberrant cell shapes, and overproduction of ethylene. The Plant Cell, 14, 165-179.
60. Zuo, J., Niu, Q.W., Nishizawa, N., Wu, Y., Kost, B. and Chua, N.H. (2000) KORRIGAN, an Arabidopsis endo-1,4-beta-glucanase, localizes to the cell plate by polarized targeting and is essential for cytokinesis. Plant Cell, 12, 1137-1152.