메뉴 건너뛰기




Volumn 10, Issue , 2010, Pages

Analysis of expressed sequence tags from a single wheat cultivar facilitates interpretation of tandem mass spectrometry data and discrimination of gamma gliadin proteins that may play different functional roles in flour

Author keywords

[No Author keywords available]

Indexed keywords

TRITICUM AESTIVUM;

EID: 77649315700     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-10-7     Document Type: Article
Times cited : (36)

References (39)
  • 1
    • 0025357314 scopus 로고
    • The prolamin storage proteins of cereal seeds: structure and evolution
    • 1131235, 2183790
    • Shewry PR, Tatham AS. The prolamin storage proteins of cereal seeds: structure and evolution. Biochem J 1990, 267:1-12. 1131235, 2183790.
    • (1990) Biochem J , vol.267 , pp. 1-12
    • Shewry, P.R.1    Tatham, A.S.2
  • 2
    • 33748885488 scopus 로고    scopus 로고
    • Chemistry of gluten proteins
    • 10.1016/j.fm.2006.07.004, 17008153
    • Wieser H. Chemistry of gluten proteins. Food Microbiol 2007, 24:115-119. 10.1016/j.fm.2006.07.004, 17008153.
    • (2007) Food Microbiol , vol.24 , pp. 115-119
    • Wieser, H.1
  • 3
    • 3042587720 scopus 로고    scopus 로고
    • The low-molecular-weight glutenin subunits of wheat gluten
    • D'Ovidio R, Masci S. The low-molecular-weight glutenin subunits of wheat gluten. J Cereal Sci 2004, 39:321-339.
    • (2004) J Cereal Sci , vol.39 , pp. 321-339
    • D'Ovidio, R.1    Masci, S.2
  • 4
    • 0002643154 scopus 로고
    • Glutenin structure in relation to wheat quality
    • St. Paul, Minn.: American Association of Cereal Chemists, Pomeranz Y
    • Kasarda DD. Glutenin structure in relation to wheat quality. Wheat is unique 1989, 277-302. St. Paul, Minn.: American Association of Cereal Chemists, Pomeranz Y.
    • (1989) Wheat is unique , pp. 277-302
    • Kasarda, D.D.1
  • 5
    • 33744527147 scopus 로고    scopus 로고
    • Differential accumulation of sulfur-rich and sulfur-poor wheat flour proteins is affected by temperature and mineral nutrition during grain development
    • DuPont FM, Hurkman WJ, Vensel WH, Chan R, Lopez R, Tanaka CK, Altenbach SB. Differential accumulation of sulfur-rich and sulfur-poor wheat flour proteins is affected by temperature and mineral nutrition during grain development. J Cereal Sci 2006, 44:101-112.
    • (2006) J Cereal Sci , vol.44 , pp. 101-112
    • DuPont, F.M.1    Hurkman, W.J.2    Vensel, W.H.3    Chan, R.4    Lopez, R.5    Tanaka, C.K.6    Altenbach, S.B.7
  • 7
    • 38149045956 scopus 로고    scopus 로고
    • Mass spectrometry analysis of gliadins in celiac disease
    • 10.1002/jms.1361, 18085572
    • Ferranti P, Mamone G, Picariello G, Addeo F. Mass spectrometry analysis of gliadins in celiac disease. J Mass Spectrom 2007, 42:1531-1548. 10.1002/jms.1361, 18085572.
    • (2007) J Mass Spectrom , vol.42 , pp. 1531-1548
    • Ferranti, P.1    Mamone, G.2    Picariello, G.3    Addeo, F.4
  • 8
    • 79959839759 scopus 로고    scopus 로고
    • DFCI Wheat Gene Index
    • DFCI Wheat Gene Index. , http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=wheat
  • 10
    • 79959830292 scopus 로고    scopus 로고
    • GrainGenes-SQL Query resources: contig information
    • GrainGenes-SQL Query resources: contig information. , http://wheat.pw.usda.gov/cgi-bin/westsql/contig.cgi
  • 11
    • 79959820601 scopus 로고    scopus 로고
    • HarvEST
    • HarvEST. , http://harvest.ucr.edu/
  • 12
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: a DNA sequence assembly program
    • 10.1101/gr.9.9.868, 310812, 10508846
    • Huang X, Madan A. CAP3: a DNA sequence assembly program. Genome Res 1999, 9:868-877. 10.1101/gr.9.9.868, 310812, 10508846.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 13
    • 84872273692 scopus 로고    scopus 로고
    • SignalP 3.0 Server
    • SignalP 3.0 Server. , http://www.cbs.dtu.dk/services/SignalP/
  • 14
    • 0034888608 scopus 로고    scopus 로고
    • The wheat γ-gliadin genes: characterization of ten new sequences and further understanding of γ-gliadin gene family structure
    • Anderson OD, Hsia CC, Torres V. The wheat γ-gliadin genes: characterization of ten new sequences and further understanding of γ-gliadin gene family structure. Theor Appl Genet 2001, 103:323-330.
    • (2001) Theor Appl Genet , vol.103 , pp. 323-330
    • Anderson, O.D.1    Hsia, C.C.2    Torres, V.3
  • 15
    • 21244462254 scopus 로고    scopus 로고
    • Refining the rules of gliadins T cell epitope binding to the disease-associated DQ2 molecule in celiac disease: Importance of proline spacing and glutamine deamidation
    • Qiao S-W, Bergseng E, Molberg O, Jung G, Fleckenstein B, Sollid LM. Refining the rules of gliadins T cell epitope binding to the disease-associated DQ2 molecule in celiac disease: Importance of proline spacing and glutamine deamidation. J Immunol 2005, 175:254-261.
    • (2005) J Immunol , vol.175 , pp. 254-261
    • Qiao, S.-.W.1    Bergseng, E.2    Molberg, O.3    Jung, G.4    Fleckenstein, B.5    Sollid, L.M.6
  • 17
  • 19
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using Phred. II Error probabilities
    • Ewing B, Green P. Base-calling of automated sequencer traces using Phred. II Error probabilities. Genome Res 1998, 8:186-194.
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 20
    • 66149117475 scopus 로고    scopus 로고
    • The gamma-gliadin multigene family in common wheat (Triticum aestivum) and its closely related species
    • 10.1186/1471-2164-10-168, 2685405, 19383144
    • Qi P-F, Wei Y-M, Ouellet T, Chen Q, Tan X, Zheng Y-L. The gamma-gliadin multigene family in common wheat (Triticum aestivum) and its closely related species. BMC Genomics 2009, 10:168. 10.1186/1471-2164-10-168, 2685405, 19383144.
    • (2009) BMC Genomics , vol.10 , pp. 168
    • Qi, P.-.F.1    Wei, Y.-.M.2    Ouellet, T.3    Chen, Q.4    Tan, X.5    Zheng, Y.-.L.6
  • 21
    • 70349993391 scopus 로고    scopus 로고
    • The γ-gliadin gene content of a derivative from a somatic hybrid between bread wheat and tall wheatgrass
    • Chen F, Zhao F, Liu S, Xia G. The γ-gliadin gene content of a derivative from a somatic hybrid between bread wheat and tall wheatgrass. Mol Breed 2009, 24(2):117-126.
    • (2009) Mol Breed , vol.24 , Issue.2 , pp. 117-126
    • Chen, F.1    Zhao, F.2    Liu, S.3    Xia, G.4
  • 22
    • 28444487461 scopus 로고    scopus 로고
    • Cloning of nine γ-gliadin mRNAs (cDNAs) from wheat and the molecular characterization of comparative transcript levels of γ-gliadin subclasses
    • Piston F, Dorado G, Martin A, Barro F. Cloning of nine γ-gliadin mRNAs (cDNAs) from wheat and the molecular characterization of comparative transcript levels of γ-gliadin subclasses. J Cereal Sci 2006, 43:120-128.
    • (2006) J Cereal Sci , vol.43 , pp. 120-128
    • Piston, F.1    Dorado, G.2    Martin, A.3    Barro, F.4
  • 23
    • 0001639807 scopus 로고
    • Molecular analysis of γ-gliadin gene families at the complex Gli-1 locus of bread wheat (T. aestivum L.)
    • Bartels D, Altosaar I, Harberd NP Barker RF, Thompson RD. Molecular analysis of γ-gliadin gene families at the complex Gli-1 locus of bread wheat (T. aestivum L.). Theor Appl Genet 1986, 72:845-853.
    • (1986) Theor Appl Genet , vol.72 , pp. 845-853
    • Bartels, D.1    Altosaar, I.2    Harberd NP Barker, R.F.3    Thompson, R.D.4
  • 24
    • 61349091654 scopus 로고    scopus 로고
    • A catalogue of Triticum monococcum genes encoding toxic and immunogenic peptides for celiac disease patients
    • 10.1007/s00438-008-0412-8, 2757618, 19104838
    • Vaccino P, Becker H-A, Brandolini A, Salamini F, Kilian B. A catalogue of Triticum monococcum genes encoding toxic and immunogenic peptides for celiac disease patients. Mol Genet Genomics 2009, 281:289-300. 10.1007/s00438-008-0412-8, 2757618, 19104838.
    • (2009) Mol Genet Genomics , vol.281 , pp. 289-300
    • Vaccino, P.1    Becker, H.-.A.2    Brandolini, A.3    Salamini, F.4    Kilian, B.5
  • 26
    • 14644397227 scopus 로고    scopus 로고
    • Characterization of B- and C-type low molecular weight glutenin subunits by electrospray ionization mass spectrometry and matrix-assisted laser desorption/ionization mass spectrometry
    • 10.1002/pmic.200401029, 15682464
    • Muccilli V, Cunsolo V, Saletti R, Foti S, Masci S, Lafiandra D. Characterization of B- and C-type low molecular weight glutenin subunits by electrospray ionization mass spectrometry and matrix-assisted laser desorption/ionization mass spectrometry. Proteomics 2005, 5:719-728. 10.1002/pmic.200401029, 15682464.
    • (2005) Proteomics , vol.5 , pp. 719-728
    • Muccilli, V.1    Cunsolo, V.2    Saletti, R.3    Foti, S.4    Masci, S.5    Lafiandra, D.6
  • 27
    • 33645467513 scopus 로고    scopus 로고
    • A proteomic approach to verify in vivo expression of a novel γ-gliadin containing an extra cysteine residue
    • 10.1002/pmic.200500236, 16485260
    • Ferrante P, Masci S, D'Ovidio R, Lafiandra D, Volpi C, Mattei B. A proteomic approach to verify in vivo expression of a novel γ-gliadin containing an extra cysteine residue. Proteomics 2006, 6:1908-1914. 10.1002/pmic.200500236, 16485260.
    • (2006) Proteomics , vol.6 , pp. 1908-1914
    • Ferrante, P.1    Masci, S.2    D'Ovidio, R.3    Lafiandra, D.4    Volpi, C.5    Mattei, B.6
  • 28
    • 37049032163 scopus 로고    scopus 로고
    • Effect of the 1BL.1RS translocation on the wheat endosperm as revealed by proteomic analysis
    • 10.1002/pmic.200700488, 17973293
    • Gobaa S, Bancel E, Kleijer G, Stamp P, Branlard G. Effect of the 1BL.1RS translocation on the wheat endosperm as revealed by proteomic analysis. Proteomics 2007, 7:4349-4357. 10.1002/pmic.200700488, 17973293.
    • (2007) Proteomics , vol.7 , pp. 4349-4357
    • Gobaa, S.1    Bancel, E.2    Kleijer, G.3    Stamp, P.4    Branlard, G.5
  • 29
    • 38649114671 scopus 로고    scopus 로고
    • Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies
    • 10.1021/pr070540w, 18173222
    • Searle BC, Turner M, Nesvizhskii AI. Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies. J Proteome Res 2008, 7:245-253. 10.1021/pr070540w, 18173222.
    • (2008) J Proteome Res , vol.7 , pp. 245-253
    • Searle, B.C.1    Turner, M.2    Nesvizhskii, A.I.3
  • 30
    • 23044444710 scopus 로고    scopus 로고
    • Characterization of wheat gliadin proteins by combined two-dimensional gel electrophoresis and tandem mass spectrometry
    • 10.1002/pmic.200401168, 15952231
    • Mamone G, Addeo F, Chianese L, Di Luccia A, De Martino A, Nappo A, Formisano A, De Vivo P, Ferranti P. Characterization of wheat gliadin proteins by combined two-dimensional gel electrophoresis and tandem mass spectrometry. Proteomics 2005, 5:2859-2865. 10.1002/pmic.200401168, 15952231.
    • (2005) Proteomics , vol.5 , pp. 2859-2865
    • Mamone, G.1    Addeo, F.2    Chianese, L.3    Di Luccia, A.4    De Martino, A.5    Nappo, A.6    Formisano, A.7    De Vivo, P.8    Ferranti, P.9
  • 31
    • 79959813720 scopus 로고    scopus 로고
    • Index of/NSF/curator/quality/TA059E1X
    • Index of/NSF/curator/quality/TA059E1X. , http://wheat.pw.usda.gov/NSF/curator/quality/TA059E1X/
  • 32
    • 79959829102 scopus 로고    scopus 로고
    • ClustalW2
    • ClustalW2. , http://www.ebi.ac.uk/Tools/clustalw2/index.html?
  • 33
    • 79953842189 scopus 로고    scopus 로고
    • Basic Local Alignment Search Tool
    • Basic Local Alignment Search Tool. , http://blast.ncbi.nlm.nih.gov/Blast.cgi
  • 34
    • 51649111744 scopus 로고    scopus 로고
    • Extraction of up to 95% of wheat (Triticum aestivum) flour protein using warm sodium dodecyl sulfate (SDS) without reduction or sonication
    • 10.1021/jf800776b, 18616274
    • DuPont FM, Samoil V, Chan R. Extraction of up to 95% of wheat (Triticum aestivum) flour protein using warm sodium dodecyl sulfate (SDS) without reduction or sonication. J Agric Food Chem 2008, 56:7431-7438. 10.1021/jf800776b, 18616274.
    • (2008) J Agric Food Chem , vol.56 , pp. 7431-7438
    • DuPont, F.M.1    Samoil, V.2    Chan, R.3
  • 35
    • 79952485219 scopus 로고    scopus 로고
    • The Global Proteome Machine Organization Proteomics Database and Open Source Software
    • The Global Proteome Machine Organization Proteomics Database and Open Source Software. , http://www.thegpm.org/
  • 36
    • 79959817048 scopus 로고    scopus 로고
    • Mascot Daemon
    • Mascot Daemon. , http://www.matrixscience.com/daemon.html
  • 37
    • 79959850028 scopus 로고    scopus 로고
    • Proteome Software Scaffold 2
    • Proteome Software Scaffold 2. , http://www.proteomesoftware.com/Proteome_software_prod_Scaffold.html
  • 38
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • 10.1021/ac025747h, 12403597
    • Keller A, Nesvizhskii AI, Kolker E, Aebersold R. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal Chem 2002, 74:5383-5392. 10.1021/ac025747h, 12403597.
    • (2002) Anal Chem , vol.74 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 39
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • 10.1021/ac0341261, 14632076
    • Nesvizhskii AI, Keller A, Kolker E, Aebersold R. A statistical model for identifying proteins by tandem mass spectrometry. Anal Chem 2003, 75:4646-4658. 10.1021/ac0341261, 14632076.
    • (2003) Anal Chem , vol.75 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3    Aebersold, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.