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Volumn 6, Issue 2, 2010, Pages

Structure, function, and evolution of the Thiomonas spp. genome

(35)  Arsène Ploetze, Florence a   Koechler, Sandrine a   Marchal, Marie a   Coppée, Jean Yves b   Chandler, Michael c   Bonnefoy, Violaine d   Brochier Armanet, Céline d   Barakat, Mohamed e   Barbe, Valérie f   Battaglia Brunet, Fabienne g   Bruneel, Odile h   Bryan, Christopher G a,k   Cleiss Arnold, Jessica a   Cruveiller, Stéphane f,i   Erhardt, Mathieu a   Heinrich Salmeron, Audrey a   Hommais, Florence j   Joulian, Catherine g   Krin, Evelyne b   Lieutaud, Aurélie d   more..

c UPS   (France)
g BRGM   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENOME; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIAL SURVIVAL; CARBON METABOLISM; COMPARATIVE GENOMIC HYBRIDIZATION; CONTROLLED STUDY; ENERGY METABOLISM; GENE FUNCTION; GENE LOSS; GENE STRUCTURE; GENETIC GAIN; GENETIC VARIABILITY; GENOMIC ISLAND; NONHUMAN; PROTEOBACTERIA; THIOMONAS; ADAPTATION; BACTERIAL GENE; BETAPROTEOBACTERIA; DUPLICATE GENE; ENVIRONMENT; GENETICS; HORIZONTAL GENE TRANSFER; METABOLISM; MOLECULAR EVOLUTION; PLASMID; PROPHAGE;

EID: 77649223742     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1000859     Document Type: Article
Times cited : (131)

References (73)
  • 1
    • 0141741231 scopus 로고    scopus 로고
    • The microbiology of acidic mine waters
    • Johnson DB, Hallberg KB (2003) The microbiology of acidic mine waters. Res Microbiol 154: 466-473.
    • (2003) Res Microbiol , vol.154 , pp. 466-473
    • Johnson, D.B.1    Hallberg, K.B.2
  • 2
    • 12944298784 scopus 로고    scopus 로고
    • Microbiology of a wetland ecosystem constructed to remediate mine drainage from a heavy metal mine
    • Hallberg KB, Johnson DB (2005) Microbiology of a wetland ecosystem constructed to remediate mine drainage from a heavy metal mine. Sci Total Environ 338: 53-66.
    • (2005) Sci Total Environ , vol.338 , pp. 53-66
    • Hallberg, K.B.1    Johnson, D.B.2
  • 3
    • 0042381486 scopus 로고    scopus 로고
    • Mediation of arsenic oxidation by Thiomonas sp. in acid-mine drainage (Carnoulès, France)
    • Bruneel O, Personné JC, Casiot C, Leblanc M, Elbaz-Poulichet F, et al. (2003) Mediation of arsenic oxidation by Thiomonas sp. in acid-mine drainage (Carnoulès, France). J Appl Microbiol 95: 492-499.
    • (2003) J Appl Microbiol , vol.95 , pp. 492-499
    • Bruneel, O.1    Personné, J.C.2    Casiot, C.3    Leblanc, M.4    Elbaz-Poulichet, F.5
  • 4
    • 0036378199 scopus 로고    scopus 로고
    • An arsenic(III)-oxidizing bacterial population: Selection, characterization, and performance in reactors
    • Battaglia-Brunet F, Dictor MC, Garrido F, Crouzet C, Morin D, et al. (2002) An arsenic(III)-oxidizing bacterial population: selection, characterization, and performance in reactors. J Appl Microbiol 93: 656-667.
    • (2002) J Appl Microbiol , vol.93 , pp. 656-667
    • Battaglia-Brunet, F.1    Dictor, M.C.2    Garrido, F.3    Crouzet, C.4    Morin, D.5
  • 5
    • 38149093947 scopus 로고    scopus 로고
    • Arsenite oxidation by a chemoautotrophic moderately acidophilic Thiomonas sp.: From the strain isolation to the gene study
    • Duquesne K, Lieutaud A, Ratouchniak J, Muller D, Lett MC, et al. (2008) Arsenite oxidation by a chemoautotrophic moderately acidophilic Thiomonas sp.: from the strain isolation to the gene study. Environ Microbiol 10: 228-237.
    • (2008) Environ Microbiol , vol.10 , pp. 228-237
    • Duquesne, K.1    Lieutaud, A.2    Ratouchniak, J.3    Muller, D.4    Lett, M.C.5
  • 6
    • 33644940187 scopus 로고    scopus 로고
    • Oxidation of iron, sulfur and arsenic in mine waters and mine wastes: An important role of novel Thiomonas spp
    • Tsezos AHM, Remondaki E, eds, Greece: National Technical University of Athens. pp
    • Coupland K, Battaglia-Brunet F, Hallberg KB, Dictor MC, Garrido F, et al. (2004) Oxidation of iron, sulfur and arsenic in mine waters and mine wastes: an important role of novel Thiomonas spp. In: Tsezos AHM, Remondaki E, eds. Biohydrometallurgy: a sustainable technology in evolution. Zografou, Greece: National Technical University of Athens. pp 639-646.
    • (2004) Biohydrometallurgy: A sustainable technology in evolution. Zografou , pp. 639-646
    • Coupland, K.1    Battaglia-Brunet, F.2    Hallberg, K.B.3    Dictor, M.C.4    Garrido, F.5
  • 7
    • 0030968533 scopus 로고    scopus 로고
    • Phylogeny of Thiobacillus cuprinus and other mixotrophic thiobacilli: Proposal for Thiomonas gen. nov
    • Moreira D, Amils R (1997) Phylogeny of Thiobacillus cuprinus and other mixotrophic thiobacilli: proposal for Thiomonas gen. nov. Int J Syst Bacteriol 47: 522-528.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 522-528
    • Moreira, D.1    Amils, R.2
  • 8
    • 68949094431 scopus 로고    scopus 로고
    • Carbon and arsenic metabolism in Thiomonas strains: Differences revealed diverse adaptation processes
    • Bryan CG, Marchal M, Battaglia-Brunet F, Klugler V, Lemaitre-Guillier C, et al. (2009) Carbon and arsenic metabolism in Thiomonas strains: differences revealed diverse adaptation processes. BMC Microbiol 9: 127.
    • (2009) BMC Microbiol , vol.9 , pp. 127
    • Bryan, C.G.1    Marchal, M.2    Battaglia-Brunet, F.3    Klugler, V.4    Lemaitre-Guillier, C.5
  • 9
    • 33646052829 scopus 로고    scopus 로고
    • Oxidation of arsenite by Thiomonas strains and characterization of Thiomonas arsenivorans sp. nov
    • Battaglia-Brunet F, Joulian C, Garrido F, Dictor MC, Morin D, et al. (2006) Oxidation of arsenite by Thiomonas strains and characterization of Thiomonas arsenivorans sp. nov. Antonie van Leeuwenhoek 89: 99-108.
    • (2006) Antonie van Leeuwenhoek , vol.89 , pp. 99-108
    • Battaglia-Brunet, F.1    Joulian, C.2    Garrido, F.3    Dictor, M.C.4    Morin, D.5
  • 10
    • 33751212458 scopus 로고    scopus 로고
    • Confirmation of Thiomonas delicata (formerly Thiobacillus delicatus) as a distinct species of the genus Thiomonas Moreira and Amils 1997 with comments on some species currently assigned to the genus
    • Katayama Y, Uchino Y, Wood AP, Kelly DP (2006) Confirmation of Thiomonas delicata (formerly Thiobacillus delicatus) as a distinct species of the genus Thiomonas Moreira and Amils 1997 with comments on some species currently assigned to the genus. Int J Syst Evol Microbiol 56: 2553-2557.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 2553-2557
    • Katayama, Y.1    Uchino, Y.2    Wood, A.P.3    Kelly, D.P.4
  • 11
    • 0141938368 scopus 로고    scopus 로고
    • Novel acidophiles isolated from moderately acidic mine drainage waters
    • Hallberg KB, Johnson DB (2003) Novel acidophiles isolated from moderately acidic mine drainage waters. Hydrometallurgy 71: 139-148.
    • (2003) Hydrometallurgy , vol.71 , pp. 139-148
    • Hallberg, K.B.1    Johnson, D.B.2
  • 12
    • 0038630697 scopus 로고    scopus 로고
    • Bacterial immobilization and oxidation of arsenic in acid mine drainage (Carnoulès creek, France)
    • Casiot C, Morin G, Juillot F, Bruneel O, Personné JC, et al. (2003) Bacterial immobilization and oxidation of arsenic in acid mine drainage (Carnoulès creek, France). Water Res 37: 2929-2936.
    • (2003) Water Res , vol.37 , pp. 2929-2936
    • Casiot, C.1    Morin, G.2    Juillot, F.3    Bruneel, O.4    Personné, J.C.5
  • 13
    • 63049138461 scopus 로고    scopus 로고
    • Sequencing the species pan-genome
    • Bentley S (2009) Sequencing the species pan-genome. Nat Rev Microbiol 7: 258-259.
    • (2009) Nat Rev Microbiol , vol.7 , pp. 258-259
    • Bentley, S.1
  • 15
    • 34547642519 scopus 로고    scopus 로고
    • Role of staphylococcal phage and SaPI integrase in intra- and interspecies SaPI transfer
    • Maiques E, Ubeda C, Tormo MA, Ferrer MD, Lasa I, et al. (2007) Role of staphylococcal phage and SaPI integrase in intra- and interspecies SaPI transfer. J Bacteriol 189: 5608-5616.
    • (2007) J Bacteriol , vol.189 , pp. 5608-5616
    • Maiques, E.1    Ubeda, C.2    Tormo, M.A.3    Ferrer, M.D.4    Lasa, I.5
  • 16
    • 18244379036 scopus 로고    scopus 로고
    • Horizontal transfer of the high-pathogenicity island of Yersinia pseudotuberculosis
    • Lesic B, Carniel E (2005) Horizontal transfer of the high-pathogenicity island of Yersinia pseudotuberculosis. J Bacteriol 187: 3352-3358.
    • (2005) J Bacteriol , vol.187 , pp. 3352-3358
    • Lesic, B.1    Carniel, E.2
  • 17
    • 0038782123 scopus 로고    scopus 로고
    • Unusual integrase gene expression on the clc genomic island in Pseudomonas sp. strain B13
    • Sentchilo V, Ravatn R, Werlen C, Zehnder AJ, van der Meer JR (2003) Unusual integrase gene expression on the clc genomic island in Pseudomonas sp. strain B13. J Bacteriol 185: 4530-4538.
    • (2003) J Bacteriol , vol.185 , pp. 4530-4538
    • Sentchilo, V.1    Ravatn, R.2    Werlen, C.3    Zehnder, A.J.4    van der Meer, J.R.5
  • 18
    • 0033758756 scopus 로고    scopus 로고
    • Pathogenicity islands and the evolution of microbes
    • Hacker J, Kaper JB (2000) Pathogenicity islands and the evolution of microbes. Annu Rev Microbiol 54: 641-679.
    • (2000) Annu Rev Microbiol , vol.54 , pp. 641-679
    • Hacker, J.1    Kaper, J.B.2
  • 21
    • 43849089834 scopus 로고    scopus 로고
    • Microbial diversity and the genetic nature of microbial species
    • Achtman M, Wagner M (2008) Microbial diversity and the genetic nature of microbial species. Nat Rev Microbiol 6: 431-440.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 431-440
    • Achtman, M.1    Wagner, M.2
  • 22
    • 59849086092 scopus 로고    scopus 로고
    • The bacterial species challenge: Making sense of genetic and ecological diversity
    • Fraser C, Alm EJ, Polz MF, Spratt BG, Hanage WP (2009) The bacterial species challenge: making sense of genetic and ecological diversity. Science 323: 741-746.
    • (2009) Science , vol.323 , pp. 741-746
    • Fraser, C.1    Alm, E.J.2    Polz, M.F.3    Spratt, B.G.4    Hanage, W.P.5
  • 23
    • 25444524604 scopus 로고    scopus 로고
    • Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial "pan-genome
    • Tettelin H, Masignani V, Cieslewicz MJ, Donati C, Medini D, et al. (2005) Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". Proc Natl Acad Sci U S A 102: 13950-13955.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 13950-13955
    • Tettelin, H.1    Masignani, V.2    Cieslewicz, M.J.3    Donati, C.4    Medini, D.5
  • 24
    • 37749041470 scopus 로고    scopus 로고
    • Patterns and implications of gene gain and loss in the evolution of Prochlorococcus
    • doi:10.1371/journal.pgen.0030231
    • Kettler GC, Martiny AC, Huang K, Zucker J, Coleman ML, et al. (2007) Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. PLoS Genet 3: e231. doi:10.1371/journal.pgen.0030231.
    • (2007) PLoS Genet , vol.3
    • Kettler, G.C.1    Martiny, A.C.2    Huang, K.3    Zucker, J.4    Coleman, M.L.5
  • 25
    • 33645232361 scopus 로고    scopus 로고
    • Genomic islands and the ecology and evolution of Prochlorococcus
    • Coleman ML, Sullivan MB, Martiny AC, Steglich C, Barry K, et al. (2006) Genomic islands and the ecology and evolution of Prochlorococcus. Science 311: 1768-1770.
    • (2006) Science , vol.311 , pp. 1768-1770
    • Coleman, M.L.1    Sullivan, M.B.2    Martiny, A.C.3    Steglich, C.4    Barry, K.5
  • 26
    • 57749188258 scopus 로고    scopus 로고
    • Homologous recombination in Agrobacterium: Potential implications for the genomic species concept in bacteria
    • Costechareyre D, Bertolla F, Nesme X (2009) Homologous recombination in Agrobacterium: potential implications for the genomic species concept in bacteria. Mol Biol Evol 26: 167-176.
    • (2009) Mol Biol Evol , vol.26 , pp. 167-176
    • Costechareyre, D.1    Bertolla, F.2    Nesme, X.3
  • 27
    • 0035931866 scopus 로고    scopus 로고
    • Life in extreme environments
    • Rothschild LJ, Mancinelli RL (2001) Life in extreme environments. Nature 409: 1092-1101.
    • (2001) Nature , vol.409 , pp. 1092-1101
    • Rothschild, L.J.1    Mancinelli, R.L.2
  • 28
    • 34250348135 scopus 로고    scopus 로고
    • Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool
    • Schluter A, Szczepanowski R, Puhler A, Top EM (2007) Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool. FEMS Microbiol Rev 31: 449-477.
    • (2007) FEMS Microbiol Rev , vol.31 , pp. 449-477
    • Schluter, A.1    Szczepanowski, R.2    Puhler, A.3    Top, E.M.4
  • 29
    • 3042568671 scopus 로고    scopus 로고
    • Operon mer: Bacterial resistance to mercury and potential for bioremediation of contaminated environments
    • Nascimento AM, Chartone-Souza E (2003) Operon mer: bacterial resistance to mercury and potential for bioremediation of contaminated environments. Genet Mol Res 2: 92-101.
    • (2003) Genet Mol Res , vol.2 , pp. 92-101
    • Nascimento, A.M.1    Chartone-Souza, E.2
  • 31
    • 52949095063 scopus 로고    scopus 로고
    • Sulfur metabolism in phototrophic sulfur bacteria
    • Frigaard NU, Dahl C (2009) Sulfur metabolism in phototrophic sulfur bacteria. Adv Microb Physiol 54: 103-200.
    • (2009) Adv Microb Physiol , vol.54 , pp. 103-200
    • Frigaard, N.U.1    Dahl, C.2
  • 33
    • 34047264809 scopus 로고    scopus 로고
    • Life in acid: PH homeostasis in acidophiles
    • Baker-Austin C, Dopson M (2007) Life in acid: pH homeostasis in acidophiles. Trends Microbiol 15: 165-171.
    • (2007) Trends Microbiol , vol.15 , pp. 165-171
    • Baker-Austin, C.1    Dopson, M.2
  • 34
    • 0036468233 scopus 로고    scopus 로고
    • Acid survival of Helicobacter pylori: How does urease activity trigger cytoplasmic pH homeostasis?
    • Stingl K, Altendorf K, Bakker EP (2002) Acid survival of Helicobacter pylori: how does urease activity trigger cytoplasmic pH homeostasis? Trends Microbiol 10: 70-74.
    • (2002) Trends Microbiol , vol.10 , pp. 70-74
    • Stingl, K.1    Altendorf, K.2    Bakker, E.P.3
  • 35
    • 0037126294 scopus 로고    scopus 로고
    • A biological role for prokaryotic ClC chloride channels
    • Iyer R, Iverson TM, Accardi A, Miller C (2002) A biological role for prokaryotic ClC chloride channels. Nature 419: 715-718.
    • (2002) Nature , vol.419 , pp. 715-718
    • Iyer, R.1    Iverson, T.M.2    Accardi, A.3    Miller, C.4
  • 36
    • 28644437016 scopus 로고    scopus 로고
    • A bacterial view of the periodic table: Genes and proteins for toxic inorganic ions
    • Silver S, Phung le T (2005) A bacterial view of the periodic table: genes and proteins for toxic inorganic ions. J Ind Microbiol Biotechnol 32: 587-605.
    • (2005) J Ind Microbiol Biotechnol , vol.32 , pp. 587-605
    • Silver, S.1    Phung le, T.2
  • 37
    • 36248981481 scopus 로고    scopus 로고
    • Multimetal resistance and tolerance in microbial biofilms
    • Harrison JJ, Ceri H, Turner RJ (2007) Multimetal resistance and tolerance in microbial biofilms. Nat Rev Micro 5: 928-938.
    • (2007) Nat Rev Micro , vol.5 , pp. 928-938
    • Harrison, J.J.1    Ceri, H.2    Turner, R.J.3
  • 38
    • 34247589893 scopus 로고    scopus 로고
    • A tale of two oxidation states: Bacterial colonization of arsenic-rich environments
    • doi:10.1371/journal.pgen.0030053
    • Muller D, Médigue C, Koechler S, Barbe V, Barakat M, et al. (2007) A tale of two oxidation states: bacterial colonization of arsenic-rich environments. PLoS Genet 3: e53. doi:10.1371/journal.pgen.0030053.
    • (2007) PLoS Genet , vol.3
    • Muller, D.1    Médigue, C.2    Koechler, S.3    Barbe, V.4    Barakat, M.5
  • 39
    • 13544263302 scopus 로고    scopus 로고
    • Genes and enzymes involved in bacterial oxidation and reduction of inorganic arsenic
    • Silver S, Phung LT (2005) Genes and enzymes involved in bacterial oxidation and reduction of inorganic arsenic. Appl Environ Microbiol 71: 599-608.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 599-608
    • Silver, S.1    Phung, L.T.2
  • 40
    • 2442605626 scopus 로고    scopus 로고
    • As(III) and Sb(III) uptake by GlpF and efflux by ArsB in Escherichia coli
    • Meng YL, Liu Z, Rosen BP (2004) As(III) and Sb(III) uptake by GlpF and efflux by ArsB in Escherichia coli. J Biol Chem 279: 18334-18341.
    • (2004) J Biol Chem , vol.279 , pp. 18334-18341
    • Meng, Y.L.1    Liu, Z.2    Rosen, B.P.3
  • 41
    • 0242362757 scopus 로고    scopus 로고
    • Modulation of DNA repair processes by arsenic and selenium compounds
    • Hartwig A, Blessing H, Schwerdtle T, Walter I (2003) Modulation of DNA repair processes by arsenic and selenium compounds. Toxicology 193: 161-169.
    • (2003) Toxicology , vol.193 , pp. 161-169
    • Hartwig, A.1    Blessing, H.2    Schwerdtle, T.3    Walter, I.4
  • 42
    • 0037972159 scopus 로고    scopus 로고
    • Induction of oxidative DNA damage by arsenite and its trivalent and pentavalent methylated metabolites in cultured human cells and isolated DNA
    • Schwerdtle T, Walter I, Mackiw I, Hartwig A (2003) Induction of oxidative DNA damage by arsenite and its trivalent and pentavalent methylated metabolites in cultured human cells and isolated DNA. Carcinogenesis 24: 967-974.
    • (2003) Carcinogenesis , vol.24 , pp. 967-974
    • Schwerdtle, T.1    Walter, I.2    Mackiw, I.3    Hartwig, A.4
  • 43
    • 70349274104 scopus 로고    scopus 로고
    • Structural and mechanistic determinants of c-di-GMP signalling
    • Schirmer T, Jenal U (2009) Structural and mechanistic determinants of c-di-GMP signalling. Nat Rev Microbiol 7: 724-735.
    • (2009) Nat Rev Microbiol , vol.7 , pp. 724-735
    • Schirmer, T.1    Jenal, U.2
  • 44
    • 63049137897 scopus 로고    scopus 로고
    • Principles of c-di-GMP signalling in bacteria
    • Hengge R (2009) Principles of c-di-GMP signalling in bacteria. Nat Rev Microbiol 7: 263-273.
    • (2009) Nat Rev Microbiol , vol.7 , pp. 263-273
    • Hengge, R.1
  • 45
    • 2942689400 scopus 로고    scopus 로고
    • Shaping bacterial genomes with integrative and conjugative elements
    • Burrus V, Waldor MK (2004) Shaping bacterial genomes with integrative and conjugative elements. Res Microbiol 155: 376-386.
    • (2004) Res Microbiol , vol.155 , pp. 376-386
    • Burrus, V.1    Waldor, M.K.2
  • 46
    • 0037125989 scopus 로고    scopus 로고
    • Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae
    • Tettelin H, Masignani V, Cieslewicz MJ, Eisen JA, Peterson S, et al. (2002) Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae. Proc Natl Acad Sci U S A 99: 12391-12396.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 12391-12396
    • Tettelin, H.1    Masignani, V.2    Cieslewicz, M.J.3    Eisen, J.A.4    Peterson, S.5
  • 47
    • 2942571207 scopus 로고    scopus 로고
    • Extensive genomic diversity in pathogenic Escherichia coli and Shigella strains revealed by comparative genomic hybridization microarray
    • Fukiya S, Mizoguchi H, Tobe T, Mori H (2004) Extensive genomic diversity in pathogenic Escherichia coli and Shigella strains revealed by comparative genomic hybridization microarray. J Bacteriol 186: 3911-3921.
    • (2004) J Bacteriol , vol.186 , pp. 3911-3921
    • Fukiya, S.1    Mizoguchi, H.2    Tobe, T.3    Mori, H.4
  • 48
    • 33846603341 scopus 로고    scopus 로고
    • Bacillus subtilis genome diversity
    • Earl AM, Losick R, Kolter R (2007) Bacillus subtilis genome diversity. J Bacteriol 189: 1163-1170.
    • (2007) J Bacteriol , vol.189 , pp. 1163-1170
    • Earl, A.M.1    Losick, R.2    Kolter, R.3
  • 50
    • 33745067721 scopus 로고    scopus 로고
    • Ten years of bacterial genome sequencing: Comparative-genomics-based discoveries
    • Binnewies TT, Motro Y, Hallin PF, Lund O, Dunn D, et al. (2006) Ten years of bacterial genome sequencing: comparative-genomics-based discoveries. Funct Integr Genomics 6: 165-185.
    • (2006) Funct Integr Genomics , vol.6 , pp. 165-185
    • Binnewies, T.T.1    Motro, Y.2    Hallin, P.F.3    Lund, O.4    Dunn, D.5
  • 51
    • 0037337810 scopus 로고    scopus 로고
    • Comparative genomic analyses of the Vibrio pathogenicity island and cholera toxin prophage regions in nonepidemic serogroup strains of Vibrio cholerae
    • Li M, Kotetishvili M, Chen Y, Sozhamannan S (2003) Comparative genomic analyses of the Vibrio pathogenicity island and cholera toxin prophage regions in nonepidemic serogroup strains of Vibrio cholerae. Appl Environ Microbiol 69: 1728-1738.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1728-1738
    • Li, M.1    Kotetishvili, M.2    Chen, Y.3    Sozhamannan, S.4
  • 52
    • 33846686822 scopus 로고    scopus 로고
    • A horizontally acquired filamentous phage contributes to the pathogenicity of the plague Bacillus
    • Derbise A, Chenal-Francisque V, Pouillot F, Fayolle C, Prevost MC, et al. (2007) A horizontally acquired filamentous phage contributes to the pathogenicity of the plague Bacillus. Mol Microbiol 63: 1145-1157.
    • (2007) Mol Microbiol , vol.63 , pp. 1145-1157
    • Derbise, A.1    Chenal-Francisque, V.2    Pouillot, F.3    Fayolle, C.4    Prevost, M.C.5
  • 53
    • 4544321685 scopus 로고    scopus 로고
    • Phages and the evolution of bacterial pathogens: From genomic rearrangements to lysogenic conversion
    • Brussow H, Canchaya C, Hardt WD (2004) Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiol Mol Biol Rev 68: 560-602.
    • (2004) Microbiol Mol Biol Rev , vol.68 , pp. 560-602
    • Brussow, H.1    Canchaya, C.2    Hardt, W.D.3
  • 54
    • 68249086310 scopus 로고    scopus 로고
    • Berglund EC, Frank AC, Calteau A, Vinnere Pettersson O, Granberg F, et al. (2009) Run-off replication of host-adaptability genes is associated with gene transfer agents in the genome of mouse-infecting Bartonella grahamii. PLoS Genet 5: e1000546. doi:10.1371/journal.pgen.1000546.
    • Berglund EC, Frank AC, Calteau A, Vinnere Pettersson O, Granberg F, et al. (2009) Run-off replication of host-adaptability genes is associated with gene transfer agents in the genome of mouse-infecting Bartonella grahamii. PLoS Genet 5: e1000546. doi:10.1371/journal.pgen.1000546.
  • 56
    • 22544481110 scopus 로고    scopus 로고
    • Potential photosynthesis gene recombination between Prochlorococcus and Synechococcus via viral intermediates
    • Zeidner G, Bielawski JP, Shmoish M, Scanlan DJ, Sabehi G, et al. (2005) Potential photosynthesis gene recombination between Prochlorococcus and Synechococcus via viral intermediates. Environ Microbiol 7: 1505-1513.
    • (2005) Environ Microbiol , vol.7 , pp. 1505-1513
    • Zeidner, G.1    Bielawski, J.P.2    Shmoish, M.3    Scanlan, D.J.4    Sabehi, G.5
  • 57
    • 58149213882 scopus 로고    scopus 로고
    • Phage-mediated intergeneric transfer of toxin genes
    • Chen J, Novick RP (2009) Phage-mediated intergeneric transfer of toxin genes. Science 323: 139-141.
    • (2009) Science , vol.323 , pp. 139-141
    • Chen, J.1    Novick, R.P.2
  • 58
    • 55749108735 scopus 로고    scopus 로고
    • Type IV secretion systems: Tools of bacterial horizontal gene transfer and virulence
    • Juhas M, Crook DW, Hood DW (2008) Type IV secretion systems: tools of bacterial horizontal gene transfer and virulence. Cell Microbiol 10: 2377-2386.
    • (2008) Cell Microbiol , vol.10 , pp. 2377-2386
    • Juhas, M.1    Crook, D.W.2    Hood, D.W.3
  • 59
    • 33645065353 scopus 로고    scopus 로고
    • Natural transformation of Neisseria gonorrhoeae: From DNA donation to homologous recombination
    • Hamilton HL, Dillard JP (2006) Natural transformation of Neisseria gonorrhoeae: from DNA donation to homologous recombination. Mol Microbiol 59: 376-385.
    • (2006) Mol Microbiol , vol.59 , pp. 376-385
    • Hamilton, H.L.1    Dillard, J.P.2
  • 61
    • 0024078126 scopus 로고
    • Phenotypic switching of Thiobacillus ferrooxidans
    • Schrader JA, Holmes DS (1988) Phenotypic switching of Thiobacillus ferrooxidans. J Bacteriol 170: 3915-3923.
    • (1988) J Bacteriol , vol.170 , pp. 3915-3923
    • Schrader, J.A.1    Holmes, D.S.2
  • 62
    • 0141938368 scopus 로고    scopus 로고
    • Novel acidophiles isolated from moderately acidic mine drainage waters
    • Hallberg KB, Johnson DB (2003) Novel acidophiles isolated from moderately acidic mine drainage waters. Hydrometallurgy 71: 139-148.
    • (2003) Hydrometallurgy , vol.71 , pp. 139-148
    • Hallberg, K.B.1    Johnson, D.B.2
  • 63
    • 0014161350 scopus 로고
    • Thiobacillus perometabolis nov. sp., a nonautotrophic thiobacillus
    • London J, Rittenberg SC (1967) Thiobacillus perometabolis nov. sp., a nonautotrophic thiobacillus. Arch Mikrobiol 59: 218-225.
    • (1967) Arch Mikrobiol , vol.59 , pp. 218-225
    • London, J.1    Rittenberg, S.C.2
  • 64
    • 0014713693 scopus 로고
    • The quantitative measurement of DNA hybridization from renaturation rates
    • De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12: 133-142.
    • (1970) Eur J Biochem , vol.12 , pp. 133-142
    • De Ley, J.1    Cattoir, H.2    Reynaerts, A.3
  • 65
    • 0020549589 scopus 로고
    • Studies on the spectrophotometric determination of DNA hybridization from renaturates rates
    • Huss VAR, Festl H, Schleifer KH (1983) Studies on the spectrophotometric determination of DNA hybridization from renaturates rates. Syst Appl Microbiol 4: 184-192.
    • (1983) Syst Appl Microbiol , vol.4 , pp. 184-192
    • Huss, V.A.R.1    Festl, H.2    Schleifer, K.H.3
  • 66
    • 28444453303 scopus 로고    scopus 로고
    • Syntons, metabolons and interactons: An exact graph-theoretical approach for exploring neighbourhood between genomic and functional data
    • Boyer F, Morgat A, Labarre L, Pothier J, Viari A (2005) Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data. Bioinformatics 21: 4209-4215.
    • (2005) Bioinformatics , vol.21 , pp. 4209-4215
    • Boyer, F.1    Morgat, A.2    Labarre, L.3    Pothier, J.4    Viari, A.5
  • 67
    • 31644444476 scopus 로고    scopus 로고
    • MaGe: A microbial genome annotation system supported by synteny results
    • Vallenet D, Labarre L, Rouy Z, Barbe V, Bocs S, et al. (2006) MaGe: a microbial genome annotation system supported by synteny results. Nucleic Acids Res 34: 53-65.
    • (2006) Nucleic Acids Res , vol.34 , pp. 53-65
    • Vallenet, D.1    Labarre, L.2    Rouy, Z.3    Barbe, V.4    Bocs, S.5
  • 68
    • 0037200201 scopus 로고    scopus 로고
    • A new nonlinear normalization method for reducing variability in DNA microarray experiments
    • research0048.0041-0048.0016
    • Workman C, Jensen LJ, Jarmer H, Berka R, Gautier L, et al. (2002) A new nonlinear normalization method for reducing variability in DNA microarray experiments. Genome Biol 3: research0048.0041-0048.0016.
    • (2002) Genome Biol , vol.3
    • Workman, C.1    Jensen, L.J.2    Jarmer, H.3    Berka, R.4    Gautier, L.5
  • 69
    • 3543105225 scopus 로고    scopus 로고
    • Circular binary segmentation for the analysis of array-based DNA copy number data
    • Olshen AB, Venkatraman ES, Lucito R, Wigler M (2004) Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics 5: 557-572.
    • (2004) Biostatistics , vol.5 , pp. 557-572
    • Olshen, A.B.1    Venkatraman, E.S.2    Lucito, R.3    Wigler, M.4
  • 70
    • 0034255358 scopus 로고    scopus 로고
    • DbClustal: Rapid and reliable global multiple alignments of protein sequences detected by database searches
    • Thompson JD, Plewniak F, Thierry J, Poch O (2000) DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches. Nucleic Acids Res 28: 2919-2926.
    • (2000) Nucleic Acids Res , vol.28 , pp. 2919-2926
    • Thompson, J.D.1    Plewniak, F.2    Thierry, J.3    Poch, O.4
  • 72
    • 0023046874 scopus 로고
    • Codon usage in yeast: Cluster analysis clearly differentiates highly and lowly expressed genes
    • Sharp PM, Tuohy TM, Mosurski KR (1986) Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes. Nucleic Acids Res 14: 5125-5143.
    • (1986) Nucleic Acids Res , vol.14 , pp. 5125-5143
    • Sharp, P.M.1    Tuohy, T.M.2    Mosurski, K.R.3
  • 73
    • 0037109119 scopus 로고    scopus 로고
    • Use and misuse of correspondence analysis in codon usage studies
    • Perriere G, Thioulouse J (2002) Use and misuse of correspondence analysis in codon usage studies. Nucleic Acids Res 30: 4548-4555.
    • (2002) Nucleic Acids Res , vol.30 , pp. 4548-4555
    • Perriere, G.1    Thioulouse, J.2


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