-
1
-
-
9244260598
-
Intrinsic immunity: A front-line defense against viral attack
-
Bieniasz, P. D. 2004. Intrinsic immunity: a front-line defense against viral attack. Nat. Immunol. 5:1109-1115.
-
(2004)
Nat. Immunol
, vol.5
, pp. 1109-1115
-
-
Bieniasz, P.D.1
-
2
-
-
1642367210
-
A single amino acid difference in the host APOBEC3G protein controls the primate species specificity of HIV type 1 virion infectivity factor
-
Bogerd, H. P., B. P. Doehle, H. L. Wiegand, and B. R. Cullen. 2004. A single amino acid difference in the host APOBEC3G protein controls the primate species specificity of HIV type 1 virion infectivity factor. Proc. Natl. Acad. Sci. USA 101:3770-3774.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 3770-3774
-
-
Bogerd, H.P.1
Doehle, B.P.2
Wiegand, H.L.3
Cullen, B.R.4
-
3
-
-
33845989107
-
Trim5α accelerates degradation of cytosolic capsid associated with productive HIV-1 entry
-
Chatterji, U., M. D. Bobardt, P. Gaskill, D. Sheerer, H. Fox, and P. A. Gallay. 2006. Trim5α accelerates degradation of cytosolic capsid associated with productive HIV-1 entry. J. Biol. Chem. 281:37025-37033.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 37025-37033
-
-
Chatterji, U.1
Bobardt, M.D.2
Gaskill, P.3
Sheerer, D.4
Fox, H.5
Gallay, P.A.6
-
4
-
-
33748625450
-
Role of common human TRIM5alpha variants in HIV-1 disease progression
-
Goldschmidt, V., G. Bleiber, M. T. May, R. Martinez, M. Ortiz, and A. Telenti. 2006. Role of common human TRIM5alpha variants in HIV-1 disease progression. Retrovirology 3:54.
-
(2006)
Retrovirology
, vol.3
, pp. 54
-
-
Goldschmidt, V.1
Bleiber, G.2
May, M.T.3
Martinez, R.4
Ortiz, M.5
Telenti, A.6
-
5
-
-
0033360816
-
The genomic record of Humankind's evolutionary roots
-
Goodman, M. 1999. The genomic record of Humankind's evolutionary roots. Am. J. Hum. Genet. 64:31-39.
-
(1999)
Am. J. Hum. Genet
, vol.64
, pp. 31-39
-
-
Goodman, M.1
-
6
-
-
3242708385
-
Retrovirus resistance factors Ref1 and Lv1 are species-specific variants of TRIM5α
-
Hatziioannou, T., D. Perez-Caballero, A. Yang, S. Cowan, and P. D. Bieniasz. 2004. Retrovirus resistance factors Ref1 and Lv1 are species-specific variants of TRIM5α. Proc. Natl. Acad. Sci. USA 101:10774-10779.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 10774-10779
-
-
Hatziioannou, T.1
Perez-Caballero, D.2
Yang, A.3
Cowan, S.4
Bieniasz, P.D.5
-
7
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck, J. P., and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
8
-
-
33749135723
-
Effects of human TRIM5α polymorphisms on antiretroviral function and susceptibility to human immunodeficiency virus infection
-
Javanbakht, H., P. An, B. Gold, D. C. Petersen, C. O'Huigin, G. W. Nelson, S. J. O'Brien, G. D. Kirk, R. Detels, S. Buchbinder, S. Donfield, S. Shulenin, B. Song, M. J. Perron, M. Stremlau, J. Sodroski, M. Dean, and C. Winkler. 2006. Effects of human TRIM5α polymorphisms on antiretroviral function and susceptibility to human immunodeficiency virus infection. Virology 354:15-27.
-
(2006)
Virology
, vol.354
, pp. 15-27
-
-
Javanbakht, H.1
An, P.2
Gold, B.3
Petersen, D.C.4
O'Huigin, C.5
Nelson, G.W.6
O'Brien, S.J.7
Kirk, G.D.8
Detels, R.9
Buchbinder, S.10
Donfield, S.11
Shulenin, S.12
Song, B.13
Perron, M.J.14
Stremlau, M.15
Sodroski, J.16
Dean, M.17
Winkler, C.18
-
9
-
-
22844437446
-
The contribution of RING and B-box 2 domains to retroviral restriction mediated by monkey TRIM5α
-
Javanbakht, H., F. az-Griffero, M. Stremlau, Z. Si, and J. Sodroski. 2005. The contribution of RING and B-box 2 domains to retroviral restriction mediated by monkey TRIM5α. J. Biol. Chem. 280:26933- 26940.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 26933-26940
-
-
Javanbakht, H.1
az-Griffero, F.2
Stremlau, M.3
Si, Z.4
Sodroski, J.5
-
10
-
-
34250839345
-
Restriction of an extinct retrovirus by the human TRIM5α antiviral protein
-
Kaiser, S. M., H. Malik, and M. Emerman. 2007. Restriction of an extinct retrovirus by the human TRIM5α antiviral protein. Science 316:1756-1758.
-
(2007)
Science
, vol.316
, pp. 1756-1758
-
-
Kaiser, S.M.1
Malik, H.2
Emerman, M.3
-
11
-
-
33750996702
-
Human TRIM5α mediated restriction of different HIV-1 subtypes and Lv2 sensitive and insensitive HIV-2 variants
-
Kaumanns, P., I. Hagmann, and M. T. Dittmar. 2006. Human TRIM5α mediated restriction of different HIV-1 subtypes and Lv2 sensitive and insensitive HIV-2 variants. Retrovirology 3:79.
-
(2006)
Retrovirology
, vol.3
, pp. 79
-
-
Kaumanns, P.1
Hagmann, I.2
Dittmar, M.T.3
-
12
-
-
3242670402
-
The human and African green monkey TRIM5α genes encode Ref1 and Lv1 retroviral restriction factor activities
-
Keckesova, Z., L. M. Ylinen, and G. J. Towers. 2004. The human and African green monkey TRIM5α genes encode Ref1 and Lv1 retroviral restriction factor activities. Proc. Natl. Acad. Sci. USA 101:10780- 10785.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 10780-10785
-
-
Keckesova, Z.1
Ylinen, L.M.2
Towers, G.J.3
-
13
-
-
33846542981
-
-
Lee, Y. N., and P. D. Bieniasz. 2007. Reconstitution of an infectious human endogenous retrovirus. PLoS. Pathog. 3:e10.
-
Lee, Y. N., and P. D. Bieniasz. 2007. Reconstitution of an infectious human endogenous retrovirus. PLoS. Pathog. 3:e10.
-
-
-
-
14
-
-
33745800238
-
Removal of arginine 332 allows human TRIM5α to bind human immunodeficiency virus capsids and to restrict infection
-
Li, Y., X. Li, M. Stremlau, M. Lee, and J. Sodroski. 2006. Removal of arginine 332 allows human TRIM5α to bind human immunodeficiency virus capsids and to restrict infection. J. Virol. 80:6738-6744.
-
(2006)
J. Virol
, vol.80
, pp. 6738-6744
-
-
Li, Y.1
Li, X.2
Stremlau, M.3
Lee, M.4
Sodroski, J.5
-
15
-
-
2442511993
-
A single amino acid determinant governs the species-specific sensitivity of APOBEC3G to Vif action
-
Mangeat, B., P. Turelli, S. Liao, and D. Trono. 2004. A single amino acid determinant governs the species-specific sensitivity of APOBEC3G to Vif action. J. Biol. Chem. 279:14481-14483.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 14481-14483
-
-
Mangeat, B.1
Turelli, P.2
Liao, S.3
Trono, D.4
-
16
-
-
0029996147
-
In vivo gene delivery and stable transduction of nondividing cells by a lentiviral vector
-
Naldini, L., U. Blomer, P. Gallay, D. Ory, R. Mulligan, F. H. Gage, I. M. Verma, and D. Trono. 1996. In vivo gene delivery and stable transduction of nondividing cells by a lentiviral vector. Science 272:263-267.
-
(1996)
Science
, vol.272
, pp. 263-267
-
-
Naldini, L.1
Blomer, U.2
Gallay, P.3
Ory, D.4
Mulligan, R.5
Gage, F.H.6
Verma, I.M.7
Trono, D.8
-
17
-
-
34250840762
-
-
Natl. Acad. Sci. USA
-
Newman, R. M., L. Hall, M. Connole, G. L. Chen, S. Sato, E. Yuste, W. Diehl, E. Hunter, A. Kaur, G. M. Miller, and W. E. Johnson. 2006. Balancing selection and the evolution of functional polymorphism in Old World monkey TRIM5α. Proc. Natl. Acad. Sci. USA.
-
(2006)
Balancing selection and the evolution of functional polymorphism in Old World monkey TRIM5α. Proc
-
-
Newman, R.M.1
Hall, L.2
Connole, M.3
Chen, G.L.4
Sato, S.5
Yuste, E.6
Diehl, W.7
Hunter, E.8
Kaur, A.9
Miller, G.M.10
Johnson, W.E.11
-
18
-
-
33748662658
-
All three variable regions of the TRIM5α B30.2 domain can contribute to the specificity of the retrovirus restriction
-
Ohkura, S., M. W. Yap, T. Sheldon, and J. P. Stoye. 2006. All three variable regions of the TRIM5α B30.2 domain can contribute to the specificity of the retrovirus restriction. J. Virol. 80:8554-8565.
-
(2006)
J. Virol
, vol.80
, pp. 8554-8565
-
-
Ohkura, S.1
Yap, M.W.2
Sheldon, T.3
Stoye, J.P.4
-
19
-
-
33645141552
-
Patterns of evolution of host proteins involved in retroviral pathogenesis
-
Ortiz, M., G. Bleiber, R. Martinez, H. Kaessmann, and A. Telenti. 2006. Patterns of evolution of host proteins involved in retroviral pathogenesis. Retrovirology 3:11.
-
(2006)
Retrovirology
, vol.3
, pp. 11
-
-
Ortiz, M.1
Bleiber, G.2
Martinez, R.3
Kaessmann, H.4
Telenti, A.5
-
20
-
-
33847211051
-
The human TRIM5α restriction factor mediates accelerated uncoating of the N-tropic murine leukemia virus capsid
-
Perron, M. J., M. Stremlau, M. Lee, H. Javanbakht, B. Song, and J. Sodroski. 2007. The human TRIM5α restriction factor mediates accelerated uncoating of the N-tropic murine leukemia virus capsid. J. Virol. 81:2138-2148.
-
(2007)
J. Virol
, vol.81
, pp. 2138-2148
-
-
Perron, M.J.1
Stremlau, M.2
Lee, M.3
Javanbakht, H.4
Song, B.5
Sodroski, J.6
-
21
-
-
17744371839
-
The tripartite motif family identifies cell compartments
-
Reymond, A., G. Meroni, A. Fantozzi, G. Merla, S. Cairo, L. Luzi, D. Riganelli, E. Zanaria, S. Messali, S. Cainarca, A. Guffanti, S. Minucci, P. G. Pelicci, and A. Ballabio. 2001. The tripartite motif family identifies cell compartments. EMBO J. 20:2140-2151.
-
(2001)
EMBO J
, vol.20
, pp. 2140-2151
-
-
Reymond, A.1
Meroni, G.2
Fantozzi, A.3
Merla, G.4
Cairo, S.5
Luzi, L.6
Riganelli, D.7
Zanaria, E.8
Messali, S.9
Cainarca, S.10
Guffanti, A.11
Minucci, S.12
Pelicci, P.G.13
Ballabio, A.14
-
22
-
-
0034201441
-
EMBOSS: The European molecular biology open software suite
-
Rice, P., I. Longden, and A. Bleasby. 2000. EMBOSS: the European molecular biology open software suite. Trends Genet. 16:276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
23
-
-
34249669155
-
Rhesus monkey TRIM5α restricts HIV-1 production through rapid degradation of viral Gag polyproteins
-
Sakuma, R., J. A. Noser, S. Ohmine, and Y. Ikeda. 2007. Rhesus monkey TRIM5α restricts HIV-1 production through rapid degradation of viral Gag polyproteins. Nat. Med. 13:631-635.
-
(2007)
Nat. Med
, vol.13
, pp. 631-635
-
-
Sakuma, R.1
Noser, J.A.2
Ohmine, S.3
Ikeda, Y.4
-
24
-
-
30044432359
-
High-frequency persistence of an impaired allele of the retroviral defense gene TRIM5α in humans
-
Sawyer, S. L., L. I. Wu, J. M. Akey, M. Emerman, and H. S. Malik. 2006. High-frequency persistence of an impaired allele of the retroviral defense gene TRIM5α in humans. Curr. Biol. 16:95-100.
-
(2006)
Curr. Biol
, vol.16
, pp. 95-100
-
-
Sawyer, S.L.1
Wu, L.I.2
Akey, J.M.3
Emerman, M.4
Malik, H.S.5
-
25
-
-
14544281087
-
Positive selection of primate TRIM5α identifies a critical species-specific retroviral restriction domain
-
Sawyer, S. L., L. I. Wu, M. Emerman, and H. S. Malik. 2005. Positive selection of primate TRIM5α identifies a critical species-specific retroviral restriction domain. Proc. Natl. Acad. Sci. USA 102:2832-2837.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 2832-2837
-
-
Sawyer, S.L.1
Wu, L.I.2
Emerman, M.3
Malik, H.S.4
-
26
-
-
1642380210
-
A single amino acid of APOBEC3G controls its species-specific interaction with virion infectivity factor (Vif)
-
Schrofelbauer, B., D. Chen, and N. R. Landau. 2004. A single amino acid of APOBEC3G controls its species-specific interaction with virion infectivity factor (Vif). Proc. Natl. Acad. Sci. USA 101:3927-3932.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 3927-3932
-
-
Schrofelbauer, B.1
Chen, D.2
Landau, N.R.3
-
27
-
-
0037043699
-
Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein
-
Sheehy, A. M., N. C. Gaddis, J. D. Choi, and M. H. Malim. 2002. Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein. Nature 418:646-650.
-
(2002)
Nature
, vol.418
, pp. 646-650
-
-
Sheehy, A.M.1
Gaddis, N.C.2
Choi, J.D.3
Malim, M.H.4
-
28
-
-
10944259799
-
The B30.2(SPRY) domain of the retroviral restriction factor TRIM5α exhibits lineage-specific length and sequence variation in primates
-
Song, B., B. Gold, C. O'Huigin, H. Javanbakht, X. Li, M. Stremlau, C. Winkler, M. Dean, and J. Sodroski. 2005. The B30.2(SPRY) domain of the retroviral restriction factor TRIM5α exhibits lineage-specific length and sequence variation in primates. J. Virol. 79:6111-6121.
-
(2005)
J. Virol
, vol.79
, pp. 6111-6121
-
-
Song, B.1
Gold, B.2
O'Huigin, C.3
Javanbakht, H.4
Li, X.5
Stremlau, M.6
Winkler, C.7
Dean, M.8
Sodroski, J.9
-
29
-
-
15244346957
-
Retrovirus restriction by TRIM5α variants from Old World and New World primates
-
Song, B., H. Javanbakht, M. Perron, D. H. Park, M. Stremlau, and J. Sodroski. 2005. Retrovirus restriction by TRIM5α variants from Old World and New World primates. J. Virol. 79:3930-3937.
-
(2005)
J. Virol
, vol.79
, pp. 3930-3937
-
-
Song, B.1
Javanbakht, H.2
Perron, M.3
Park, D.H.4
Stremlau, M.5
Sodroski, J.6
-
30
-
-
33144458585
-
Genetic association of the antiviral restriction factor TRIM5α with human immunodeficiency virus type 1 infection
-
Speelmon, E. C., D. Livingston-Rosanoff, S. S. Li, Q. Vu, J. Bui, D. E. Geraghty, L. P. Zhao, and M. J. McElrath. 2006. Genetic association of the antiviral restriction factor TRIM5α with human immunodeficiency virus type 1 infection. J. Virol. 80:2463-2471.
-
(2006)
J. Virol
, vol.80
, pp. 2463-2471
-
-
Speelmon, E.C.1
Livingston-Rosanoff, D.2
Li, S.S.3
Vu, Q.4
Bui, J.5
Geraghty, D.E.6
Zhao, L.P.7
McElrath, M.J.8
-
31
-
-
1542288934
-
The cytoplasmic body component TRIM5α restricts HIV-1 infection in Old World monkeys
-
Stremlau, M., C. M. Owens, M. J. Perron, M. Kiessling, P. Autissier, and J. Sodroski. 2004. The cytoplasmic body component TRIM5α restricts HIV-1 infection in Old World monkeys. Nature 427:848-853.
-
(2004)
Nature
, vol.427
, pp. 848-853
-
-
Stremlau, M.1
Owens, C.M.2
Perron, M.J.3
Kiessling, M.4
Autissier, P.5
Sodroski, J.6
-
32
-
-
33645794537
-
Specific recognition and accelerated uncoating of retroviral capsids by the TRIM5α restriction factor
-
Stremlau, M., M. Perron, M. Lee, Y. Li, B. Song, H. Javanbakht, F. az-Griffero, D. J. Anderson, W. I. Sundquist, and J. Sodroski. 2006. Specific recognition and accelerated uncoating of retroviral capsids by the TRIM5α restriction factor. Proc. Natl. Acad. Sci. USA 103:5514- 5519.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 5514-5519
-
-
Stremlau, M.1
Perron, M.2
Lee, M.3
Li, Y.4
Song, B.5
Javanbakht, H.6
az-Griffero, F.7
Anderson, D.J.8
Sundquist, W.I.9
Sodroski, J.10
-
33
-
-
13944259674
-
Species-specific variation in the B30.2(SPRY) domain of TRIM5α determines the potency of human immunodeficiency virus restriction
-
Stremlau, M., M. Perron, S. Welikala, and J. Sodroski. 2005. Species-specific variation in the B30.2(SPRY) domain of TRIM5α determines the potency of human immunodeficiency virus restriction. J. Virol. 79:3139-3145.
-
(2005)
J. Virol
, vol.79
, pp. 3139-3145
-
-
Stremlau, M.1
Perron, M.2
Welikala, S.3
Sodroski, J.4
-
34
-
-
1942531303
-
Resurrecting ancient genes: Experimental analysis of extinct molecules
-
Thornton, J. W. 2004. Resurrecting ancient genes: experimental analysis of extinct molecules. Nat. Rev. Genet. 5:366-375.
-
(2004)
Nat. Rev. Genet
, vol.5
, pp. 366-375
-
-
Thornton, J.W.1
-
36
-
-
1842732157
-
A single amino acid substitution in human APOBEC3G antiretroviral enzyme confers resistance to HIV-1 virion infectivity factor-induced depletion
-
Xu, H., E. S. Svarovskaia, R. Barr, Y. Zhang, M. A. Khan, K. Strebel, and V. K. Pathak. 2004. A single amino acid substitution in human APOBEC3G antiretroviral enzyme confers resistance to HIV-1 virion infectivity factor-induced depletion. Proc. Natl. Acad. Sci. USA 101:5652-5657.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 5652-5657
-
-
Xu, H.1
Svarovskaia, E.S.2
Barr, R.3
Zhang, Y.4
Khan, M.A.5
Strebel, K.6
Pathak, V.K.7
-
37
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang, Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:555-556.
-
(1997)
Comput. Appl. Biosci
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
38
-
-
3242720240
-
Trim5α protein restricts both HIV-1 and murine leukemia virus
-
Yap, M. W., S. Nisole, C. Lynch, and J. P. Stoye. 2004. Trim5α protein restricts both HIV-1 and murine leukemia virus. Proc. Natl. Acad. Sci. USA 101:10786-10791.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 10786-10791
-
-
Yap, M.W.1
Nisole, S.2
Lynch, C.3
Stoye, J.P.4
-
39
-
-
11844278251
-
A single amino acid change in the SPRY domain of human Trim5α leads to HIV-1 restriction
-
Yap, M. W., S. Nisole, and J. P. Stoye. 2005. A single amino acid change in the SPRY domain of human Trim5α leads to HIV-1 restriction. Curr. Biol. 15:73-78.
-
(2005)
Curr. Biol
, vol.15
, pp. 73-78
-
-
Yap, M.W.1
Nisole, S.2
Stoye, J.P.3
-
40
-
-
24644432888
-
Differential restriction of human immunodeficiency virus type 2 and simian immunodeficiency virus SIVmac by TRIM5α alleles
-
Ylinen, L. M., Z. Keckesova, S. J. Wilson, S. Ranasinghe, and G. J. Towers. 2005. Differential restriction of human immunodeficiency virus type 2 and simian immunodeficiency virus SIVmac by TRIM5α alleles. J. Virol. 79:11580-11587.
-
(2005)
J. Virol
, vol.79
, pp. 11580-11587
-
-
Ylinen, L.M.1
Keckesova, Z.2
Wilson, S.J.3
Ranasinghe, S.4
Towers, G.J.5
-
41
-
-
21144441344
-
Lineage-specific expansions of retroviral insertions within the genomes of African great apes but not humans and orangutans
-
Yohn, C. T., Z. Jiang, S. D. McGrath, K. E. Hayden, P. Khaitovich, M. E. Johnson, M. Y. Eichler, J. D. McPherson, S. Zhao, S. Paabo, and E. E. Eichler. 2005. Lineage-specific expansions of retroviral insertions within the genomes of African great apes but not humans and orangutans. PLoS. Biol. 3:e110.
-
(2005)
PLoS. Biol
, vol.3
-
-
Yohn, C.T.1
Jiang, Z.2
McGrath, S.D.3
Hayden, K.E.4
Khaitovich, P.5
Johnson, M.E.6
Eichler, M.Y.7
McPherson, J.D.8
Zhao, S.9
Paabo, S.10
Eichler, E.E.11
-
42
-
-
33748701449
-
Antiretroviral potential of human tripartite motif-5 and related proteins
-
Zhang, F., T. Hatziioannou, D. Perez-Caballero, D. Derse, and P. D. Bieniasz. 2006. Antiretroviral potential of human tripartite motif-5 and related proteins. Virology 353:396-409.
-
(2006)
Virology
, vol.353
, pp. 396-409
-
-
Zhang, F.1
Hatziioannou, T.2
Perez-Caballero, D.3
Derse, D.4
Bieniasz, P.D.5
-
43
-
-
18144389862
-
Intracellular immunity to HIV-1: Newly defined retroviral battles inside infected cells
-
Zheng, Y. H., and B. M. Peterlin. 2005. Intracellular immunity to HIV-1: newly defined retroviral battles inside infected cells. Retrovirology 2:25.
-
(2005)
Retrovirology
, vol.2
, pp. 25
-
-
Zheng, Y.H.1
Peterlin, B.M.2
|