Long-term reinfection of the human genome by endogenous retroviruses

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 14, 2004, Pages 4894-4899

  Belshaw, Robert ^a   Pereira, Vini ^a   Katzourakis, Aris ^a   Talbot, Gillian ^a   Pačes, Jan ^b   Burt, Austin ^a   Tristem, Michael ^a  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

^b INSTITUTE OF MOLECULAR GENETICS   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENE; GENE SEQUENCE; HUMAN; HUMAN GENOME; MONTE CARLO METHOD; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PRIORITY JOURNAL; REINFECTION; RETROVIRUS; STOP CODON;

ENDOGENOUS RETROVIRUSES; GENOME, HUMAN; HUMANS; PHYLOGENY; VIRUS REPLICATION;

PRIMATES; UNIDENTIFIED RETROVIRUS;

EID: 1842687449     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0307800101     Document Type: Article

References (36)

1. Boeke, J. D. & Stoye, J. P. (1997) in Retroviruses, eds. Coffin, J. M., Hughes, S. H. & Varmus, H. E. (Cold Spring Harbor Lab. Press, Plainview, NY), pp. 343-435.
2. International Human Genome Sequencing Consortium (2001) Nature 409, 860-921.
3. Pačes, J., Pavlíček, A. & Pačes, V. (2002) Nucleic Acids Res. 30, 205-206.
4. Tristem, M. (2000) J. Virol. 74, 3715-3730.
5. Bénit, L., Dessen, P. & Heidmann, T. (2001) J. Virol. 75, 11709-11719.
6. Katzourakis, A. & Tristem, M. (2004) in Retroviruses and Prostate Genome Evolution, ed. Sverdlov, E. D. (Landes Bioscience, Georgetown, TX).
7. Stoye, J. P. (2001) Curr. Biol. 11, R914-R916.
8. Wei, W., Gilbert, N., Ooi, S. L., Lawler, J. F., Ostertag, E. M., Kazazian, H. H., Boeke, J. D. & Moran, J. V. (2001) Mol. Cell. Biol. 21, 1429-1439.
9. Song, S. U., Kurkulos, M., Boeke, J. D. & Corces, V. G. (1997) Development (Cambridge, U.K.) 124, 2789-2798.
10. Löwer, R., Löwer, J. & Kurth, R. (1996) Proc. Natl. Acad. Sci. USA 93, 5177-5184.
11. Andersson, M. L., Lindeskog, M., Medstrand, P., Westley, B., May, F. & Blomberg, J. (1999) J. Gen. Virol. 80, 255-260.
12. Medstrand, P. & Mager, D. L. (1998) J. Virol. 72, 9782-9787.
13. Barbulescu, M., Turner, G., Seaman, M. I., Deinard, A. S., Kidd, K. K. & Lenz, J. (1999) Curr. Biol. 9, 861-868.
14. Turner, G., Barbulescu, M., Su, M., Jensen-Seaman, M. I., Kidd, K. K. & Lenz, J. (2001) Curr. Biol. 11, 1531-1535.
15. Hughes, J. F. & Coffin, J. M. (2001) Nat. Genet. 29, 487-489.
16. Ronquist, F. & Huelsenbeck, J. P. (2003) Bioinformatics, 19, 1572-1574.
17. Swofford, D. L. (1998) PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods) (Sinauer, Sunderland, MA), Version 4.
18. Pagel, M. (1999) Nature 401, 877-884.
19. Yang, Z. H. (1997) Comput. Appl. Biosci. 13, 555-556.
20. Yang, Z. (1998) Mol. Biol. Evol. 15, 568-573.
21. Rice, P. Longden, I. & Bleasby, A. (2000) Trends Genet. 16, 276-277.
22. Weiller, G. F. (1998) Mol. Biol. Evol. 15, 326-335.
23. Holmes, E. C., Worobey, M. & Rambaut, A. (1999) Mol. Biol. Evol. 16, 405-409.
24. Rambaut, A. & Grassly, N. C. (1997) Comput. Appl. Biosci. 13, 235-238.
25. Worobey, M. (2001) Mol. Biol. Evol. 18, 1425-1434.
26. Costas, J. (2001) J. Mol. Evol. 53, 237-243.
27. Johnson, W. E. & Coffin, J. M. (1999) Proc. Natl. Acad. Sci. USA 96, 10254-10260.
28. Li, W.-H. (1997) Molecular Evolution (Sinauer, Sunderland, MA).
29. Bustamante, C. D., Nielsen, R. & Hartl, D. L. (2002) Mol. Biol. Evol. 19, 110-117.
30. Mager, D. L. & Freeman, J. D. (1995) Virology 213, 395-404.
31. Löwer, R., Tönjes, R. R., Korbmacher, C., Kurth, R. & Löwer, J. (1995) J. Virol. 69, 141-149.
32. Swanstrom, R. & Wills, J. W. (1997) in Retroviruses, eds. Coffin, J. M., Hughes, S. H. & Varmus, H. E. (Cold Spring Harbor Lab. Press, Plainview, NY), pp. 263-334.
33. Gifford, R. & Tristem, M. (2003) Virus Genes 26, 291-315.
34. Clough, J. E., Foster, J. A., Barnett, M. & Wichman, H. A. (1996) J. Mol. Evol. 42, 52-58.
35. Deininger, P. L., Batzer, M. A., Hutchison, C. A. & Edgell, M. H. (1992) Trends Genet. 8, 307-311.
36. Buzdin, A., Ustyugova, S., Khodosevich, K., Mamedov, I., Lebedev, Y. Hunsmann, G. & Sverdlov, E. (2003) Genomics, 81, 149-156.