메뉴 건너뛰기




Volumn 121, Issue 1, 2010, Pages 1-8

Genome-wide identification of intron fragment insertion mutations and their potential use as SCAR molecular markers in the soybean

Author keywords

[No Author keywords available]

Indexed keywords

AGRONOMIC TRAITS; BIOCHEMICAL PROCESS; COST EFFECTIVE; FUNCTIONAL SEQUENCES; HIGH PROBABILITY; INSERTIONS AND DELETIONS; LENGTH POLYMORPHISM; MOLECULAR MARKER; PCR PRIMER SETS; PRIMER SETS; SCAR MARKERS; SOYBEAN GENOME;

EID: 77449088057     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-010-1285-x     Document Type: Article
Times cited : (15)

References (39)
  • 2
    • 0344622123 scopus 로고
    • Spliced segments at the 5′ terminus of adenovirus 2 late mRNA
    • Berget SM, Moore C, Sharp PA (1977) Spliced segments at the 5′ terminus of adenovirus 2 late mRNA. Proc Natl Acad Sci USA 74: 3171-3175.
    • (1977) Proc Natl Acad Sci USA , vol.74 , pp. 3171-3175
    • Berget, S.M.1    Moore, C.2    Sharp, P.A.3
  • 3
    • 20444462822 scopus 로고    scopus 로고
    • Intron polymorphism (EPIC-PCR) reveals phylogeographic structure of Zacco platypus in China: a possible target for aquaculture development
    • Berrebi P, Boissin E, Fang F, Cattaneo-Berrebi G (2005) Intron polymorphism (EPIC-PCR) reveals phylogeographic structure of Zacco platypus in China: a possible target for aquaculture development. Heredity 94: 589-598.
    • (2005) Heredity , vol.94 , pp. 589-598
    • Berrebi, P.1    Boissin, E.2    Fang, F.3    Cattaneo-Berrebi, G.4
  • 4
    • 0034144380 scopus 로고    scopus 로고
    • Screening for intron-length polymorphisms in penaeid shrimps using exon-primed intron-crossing (EPIC)-PCR
    • Bierne N, Lehnert SA, Bedier E, Bonhomme F, Moore SS (2000) Screening for intron-length polymorphisms in penaeid shrimps using exon-primed intron-crossing (EPIC)-PCR. Mol Ecol 9: 233-235.
    • (2000) Mol Ecol , vol.9 , pp. 233-235
    • Bierne, N.1    Lehnert, S.A.2    Bedier, E.3    Bonhomme, F.4    Moore, S.S.5
  • 6
    • 0346890204 scopus 로고    scopus 로고
    • Evaluation of Hbr (MITE) markers for assessment of genetic relationships among maize (Zea mays L.) inbred lines
    • Casa AM, Mitchell SE, Smith OS, Register JC 3rd, Wessler SR, Kresovich S (2002) Evaluation of Hbr (MITE) markers for assessment of genetic relationships among maize (Zea mays L.) inbred lines. Theor Appl Genet 104: 104-110.
    • (2002) Theor Appl Genet , vol.104 , pp. 104-110
    • Casa, A.M.1    Mitchell, S.E.2    Smith, O.S.3    Register 3rd, J.C.4    Wessler, S.R.5    Kresovich, S.6
  • 9
    • 0033832809 scopus 로고    scopus 로고
    • Soybean genetic map of RAPD markers assigned to an existing scaffold RFLP map
    • Ferreira A, Foutz K, Keim P (2000) Soybean genetic map of RAPD markers assigned to an existing scaffold RFLP map. J Hered 91: 392-396.
    • (2000) J Hered , vol.91 , pp. 392-396
    • Ferreira, A.1    Foutz, K.2    Keim, P.3
  • 10
    • 17844404294 scopus 로고    scopus 로고
    • Linkage disequilibrium and association studies in higher plants: present status and future prospects
    • Gupta PK, Rustgi S, Kulwal PL (2005) Linkage disequilibrium and association studies in higher plants: present status and future prospects. Plant Mol Biol 57: 461-485.
    • (2005) Plant Mol Biol , vol.57 , pp. 461-485
    • Gupta, P.K.1    Rustgi, S.2    Kulwal, P.L.3
  • 13
    • 0025009208 scopus 로고
    • RFLP mapping in soybean: association between marker loci and variation in quantitative traits
    • Keim P, Diers BW, Olson TC, Shoemaker RC (1990) RFLP mapping in soybean: association between marker loci and variation in quantitative traits. Genetics 126: 735-742.
    • (1990) Genetics , vol.126 , pp. 735-742
    • Keim, P.1    Diers, B.W.2    Olson, T.C.3    Shoemaker, R.C.4
  • 15
    • 77955843600 scopus 로고    scopus 로고
    • Lightfoot DA, Gibson PT, Merkem K (2001) Soybean sudden death syndrome resistant soybeans, soybean cyst nematode resistant soybeans and methods of breeding and identifying resistant plants. US Patent 6300541.
  • 19
    • 0026645642 scopus 로고
    • Characterization of a plant SINE, p-SINE1, in rice genomes
    • Mochizuki K, Umeda M, Ohtsubo H, Ohtsubo E (1992) Characterization of a plant SINE, p-SINE1, in rice genomes. Jpn J Genet 67: 155-166.
    • (1992) Jpn J Genet , vol.67 , pp. 155-166
    • Mochizuki, K.1    Umeda, M.2    Ohtsubo, H.3    Ohtsubo, E.4
  • 21
    • 0019321718 scopus 로고
    • Rapid isolation of high molecular weight plant DNA
    • Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8: 4321-4325.
    • (1980) Nucleic Acids Res , vol.8 , pp. 4321-4325
    • Murray, M.G.1    Thompson, W.F.2
  • 22
    • 15244361476 scopus 로고    scopus 로고
    • Development and mapping of a codominant SCAR marker linked to the andromonoecious gene of melon
    • Noguera FJ, Capel J, Alvarez JI, Lozano R (2005) Development and mapping of a codominant SCAR marker linked to the andromonoecious gene of melon. Theor Appl Genet 110: 714-720.
    • (2005) Theor Appl Genet , vol.110 , pp. 714-720
    • Noguera, F.J.1    Capel, J.2    Alvarez, J.I.3    Lozano, R.4
  • 23
    • 33749583346 scopus 로고    scopus 로고
    • Intron length evolution in Drosophila
    • Presgraves DC (2006) Intron length evolution in Drosophila. Mol Biol Evol 23: 2203-2213.
    • (2006) Mol Biol Evol , vol.23 , pp. 2203-2213
    • Presgraves, D.C.1
  • 24
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132: 365-386.
    • (2000) Methods Mol Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 25
    • 47949108406 scopus 로고    scopus 로고
    • Re-annotation of the physical map of Glycine max for polyploid-like regions by BAC end sequence driven whole genome shotgun read assembly
    • Saini N, Shultz J, Lightfoot DA (2008) Re-annotation of the physical map of Glycine max for polyploid-like regions by BAC end sequence driven whole genome shotgun read assembly. BMC Genomics 9: 323.
    • (2008) BMC Genomics , vol.9 , pp. 323
    • Saini, N.1    Shultz, J.2    Lightfoot, D.A.3
  • 26
    • 57149145057 scopus 로고    scopus 로고
    • Identification of gentian cultivars using SCAR markers based on intron-length polymorphisms of flavonoid biosynthetic genes
    • Shimada N, Nakatsuka T, Nakano Y, Kakizaki Y, Abe Y, Hikage T, Nishihara M (2009) Identification of gentian cultivars using SCAR markers based on intron-length polymorphisms of flavonoid biosynthetic genes. Sci Hortic 119: 292-296.
    • (2009) Sci Hortic , vol.119 , pp. 292-296
    • Shimada, N.1    Nakatsuka, T.2    Nakano, Y.3    Kakizaki, Y.4    Abe, Y.5    Hikage, T.6    Nishihara, M.7
  • 27
    • 77955842949 scopus 로고    scopus 로고
    • Development of soybean gene-driven functional CAPS markers from the genes' re-sequencing information
    • Shu Y, Li Y, Bai X, Cai H, Ji W, Zhu Y (2009) Development of soybean gene-driven functional CAPS markers from the genes' re-sequencing information. Acta Agron Sin 35: 2015-2021.
    • (2009) Acta Agron Sin , vol.35 , pp. 2015-2021
    • Shu, Y.1    Li, Y.2    Bai, X.3    Cai, H.4    Ji, W.5    Zhu, Y.6
  • 29
    • 34047140358 scopus 로고    scopus 로고
    • The development of BAC-end sequence-based microsatellite markers and placement in the physical and genetic maps of soybean
    • Shultz J, Kazi S, Bashir R, Afzal J, Lightfoot D (2007) The development of BAC-end sequence-based microsatellite markers and placement in the physical and genetic maps of soybean. Theor Appl Genet 114: 1081-1090.
    • (2007) Theor Appl Genet , vol.114 , pp. 1081-1090
    • Shultz, J.1    Kazi, S.2    Bashir, R.3    Afzal, J.4    Lightfoot, D.5
  • 32
    • 53149135465 scopus 로고    scopus 로고
    • Exon-primed intron-crossing (EPIC) PCR markers of Helicoverpa armigera (Lepidoptera: Noctuidae)
    • Tay WT, Behere GT, Heckel DG, Lee SF, Batterham P (2008) Exon-primed intron-crossing (EPIC) PCR markers of Helicoverpa armigera (Lepidoptera: Noctuidae). Bull Entomol Res 98: 509-518.
    • (2008) Bull Entomol Res , vol.98 , pp. 509-518
    • Tay, W.T.1    Behere, G.T.2    Heckel, D.G.3    Lee, S.F.4    Batterham, P.5
  • 33
    • 0036256695 scopus 로고    scopus 로고
    • MapChart: software for the graphical presentation of linkage maps and QTLs
    • Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93: 77-78.
    • (2002) J Hered , vol.93 , pp. 77-78
    • Voorrips, R.E.1
  • 34
    • 0036779318 scopus 로고    scopus 로고
    • Phospholipase D in hormonal and stress signaling
    • Wang X (2002) Phospholipase D in hormonal and stress signaling. Curr Opio Plant Biol 5: 408-414.
    • (2002) Curr Opio Plant Biol , vol.5 , pp. 408-414
    • Wang, X.1
  • 35
    • 33744922107 scopus 로고    scopus 로고
    • Genome-wide investigation of intron length polymorphisms and their potential as molecular markers in rice (Oryza sativa L.)
    • Wang X, Zhao X, Zhu J, Wu W (2005) Genome-wide investigation of intron length polymorphisms and their potential as molecular markers in rice (Oryza sativa L.). DNA Res 12: 417-427.
    • (2005) DNA Res , vol.12 , pp. 417-427
    • Wang, X.1    Zhao, X.2    Zhu, J.3    Wu, W.4
  • 37
    • 25144519627 scopus 로고    scopus 로고
    • Identification and characterization of Australian wild rice strains of Oryza meridionalis and Oryza rufipogon by SINE insertion polymorphism
    • Xu JH, Kurata N, Akimoto M, Ohtsubo H, Ohtsubo E (2005) Identification and characterization of Australian wild rice strains of Oryza meridionalis and Oryza rufipogon by SINE insertion polymorphism. Genes Genet Syst 80: 129-134.
    • (2005) Genes Genet Syst , vol.80 , pp. 129-134
    • Xu, J.H.1    Kurata, N.2    Akimoto, M.3    Ohtsubo, H.4    Ohtsubo, E.5
  • 38
    • 2142782922 scopus 로고    scopus 로고
    • QTL mapping of ten agronomic traits on the soybean (Glycine max L. Merr.) genetic map and their association with EST markers
    • Zhang WK, Wang YJ, Luo GZ, Zhang JS, He CY, Wu XL, Gai JY, Chen SY (2004) QTL mapping of ten agronomic traits on the soybean (Glycine max L. Merr.) genetic map and their association with EST markers. Theor Appl Genet 108: 1131-1139.
    • (2004) Theor Appl Genet , vol.108 , pp. 1131-1139
    • Zhang, W.K.1    Wang, Y.J.2    Luo, G.Z.3    Zhang, J.S.4    He, C.Y.5    Wu, X.L.6    Gai, J.Y.7    Chen, S.Y.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.