Identification of gentian cultivars using SCAR markers based on intron-length polymorphisms of flavonoid biosynthetic genes

Scientia Horticulturae

Volumn 119, Issue 3, 2009, Pages 292-296

  Shimada, Norimoto ^a   Nakatsuka, Takashi ^a   Nakano, Yuki ^a   Kakizaki, Yuko ^a   Abe, Yoshiko ^a   Hikage, Takashi ^b   Nishihara, Masahiro ^a  

^a IWATE BIOTECHNOLOGY RESEARCH CENTER   (Japan)

^b Hachimantai City Floricultural Research and Development Center   (Japan)

Author keywords

Cultivar discrimination; DNA marker; Flavonoid biosynthetic gene; Gentian; SCAR

Indexed keywords

BREEDING; CULTIVAR; DNA; GENE; POLYMORPHISM;

GENTIANA; GENTIANA TRIFLORA;

EID: 57149145057     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2008.08.001     Document Type: Article

References (22)

1. Agarwal M., Shrivastava N., and Padh H. Advances in molecular marker techniques and their applications in plant sciences. Plant Cell Rep. 27 (2008) 617-631
2. Akada S., and Dube S.K. Organization of soybean chalcone synthase gene clusters and characterization of a new member of the family. Plant Mol. Biol. 29 (1995) 189-199
3. Bautista R., Crespillo R., Cánovas F.M., and Claros M.G. Identification of olive-tree cultivars with SCAR markers. Euphytica 129 (2003) 33-41
4. Goto T., Kondo T., Tamura H., Imagawa H., Iino A., and Takeda K. Structure of gentiodelphin, an acylated anthocyanin isolated from Gentiana makinori, that is stable in dilute aqueous solution. Tetrahedron Lett. 23 (1982) 3695-3698
5. Goulão L., Cabrita L., Oliveira C.M., and Leitão J.M. Comparing RAPD and AFLP analysis in discrimination and estimation of genetic similarities among apple (Malus domestica Borkh.) cultivars. Euphytica 119 (2001) 259-270
6. Inagaki Y., Johzuka-Hisatomi Y., Mori T., Takahashi S., Hayakawa Y., Peyachoknagul S., Ozeki Y., and Iida S. Genomic organization of the genes encoding dihydroflavonol 4-reductase for flower pigmentation in the Japanese and common morning glories. Gene 226 (1999) 181-188
7. Jomori H., Nakamura I., Kameya N., and Takahata Y. RAPD analysis of Gentiana scaba and G. triflora and detection of species-specific SCAR markers. Ikusyugaku Kenkyu 2 (2000) 81-87 (in Japanese)
8. Kaundun S.S., and Matsumoto S. Development of CAPS markers based on three key genes of the phenylpropanoid pathway in tea, Camellia sinensis (L.) O. Kuntze, and differentiation between assamica and sinensis varieties. Theor. Appl. Genet. 106 (2003) 375-383
9. Kobayashi H., Oikawa Y., Koiwa H., and Yamamura S. Flower-specific gene expression directed by the promoter of a chalcone synthase gene from Gentiana triflora in Petunia hybrida. Plant Sci. 131 (1998) 173-180
10. Kodama K. Gentian. In: Science J.S.O.H. (Ed). Horticulture in Japan 2006 (2006), Shukadoh Publishing, Kyoto 248-253
11. Kunihisa M., Fukino N., and Matsumoto S. Development of cleavage amplified polymorphic sequence (CAPS) markers for identification of strawberry cultivars. Euphytica 134 (2003) 209-215
12. Li Y., Li L.F., Chen G.Q., and Ge X.J. Development of ten microsatellite loci for Gentiana crassicaulis (Gentianaceae). Conserv. Genet. 8 (2007) 1499-1501
13. Matsumoto S., and Fukui H. Identification of rose cultivars and clonal plants by random amplified polymorphic DNA. Sci. Hort. 67 (1996) 49-54
14. Nakatsuka T., Nishihara M., Mishiba K., and Yamamura S. Temporal expression of flavonoid biosynthesis-related genes regulates flower pigmentation in gentian plants. Plant Sci. 168 (2005) 1309-1318
15. Nakatsuka T., Sato K., Takahashi H., Yamamura S., and Nishihara M. Cloning and characterization of the UDP-glucose:anthocyanin 5-O-glucosyltransferase gene from blue-flowered gentian. J. Exp. Bot. 59 (2008) 1241-1252
16. Nishihara M., Nakatsuka T., Mizutani-Fukuchi M., Tanaka Y., and Yamamura S. Gentians: From Gene Cloning to Molecular Breeding. Floricultural and Ornamental Biotechnology (2008), V. published by Global Science Books, UK pp. 57-67
17. Rajapakse S., Hubbard M., Kelly J.W., Abbott A.G., and Ballard R.E. Identification of rose cultivars by restriction fragment length polymorphism. Sci. Hort. 52 (1992) 237-245
18. Shimada N., Aoki T., Sato S., Nakamura Y., Tabata S., and Ayabe S. A cluster of genes encodes the two types of chalcone isomerase involved in the biosynthesis of general flavonoids and legume-specific 5-deoxy(iso)flavonoids in Lotus japonicus. Plant Physiol. 131 (2003) 941-951
19. Shimada N., Sasaki R., Sato S., Kaneko T., Tabata S., Aoki T., and Ayabe S. A comprehensive analysis of six dihydroflavonol 4-reductases encoded by a gene cluster of the Lotus japonicus genome. J. Exp. Bot. 56 (2005) 2573-2585
20. Tanaka Y., Yonekura Y., Fukuchi-Mizutani M., Fukui Y., Fujiwara H., Ashikari T., and Kusumi T. Molecular and biochemical characterization of three anthocyanin synthetic enzymes from Gentiana triflora. Plant Cell Physiol. 37 (1996) 711-716
21. Tsukazaki H., Fukuoka H., Song Y.S., Yamashita K., Wako T., and Kojima A. Considerable heterogeneity in commercial F1 varieties of bunching onion (Allium fistulosum) and proposal of breeding scheme for conferring variety traceability using SSR markers. Breed. Sci. 56 (2006) 321-326
22. Zhang X.L., Yuan Y.M., and Ge X.J. Genetic structure and differentiation of Gentiana atuntsiensis W.W. Smith and G. striolata T. N. Ho (Gentianaceae) as revealed by ISSR markers. Bot. J. Linn. Soc. 154 (2007) 225-232