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Volumn 12, Issue 6, 2005, Pages 417-427

Genome-wide investigation of intron length polymorphisms and their potential as molecular markers in rice (Oryza sativa L.)

Author keywords

Genome; Intron length polymorphism (ILP); Molecular marker; Rice (Oryza sativa L.)

Indexed keywords

COMPLEMENTARY DNA; MOLECULAR MARKER; PRIMER DNA;

EID: 33744922107     PISSN: 13402838     EISSN: 13402838     Source Type: Journal    
DOI: 10.1093/dnares/dsi019     Document Type: Article
Times cited : (106)

References (45)
  • 1
    • 0344622123 scopus 로고
    • Spliced segments at the 5′ terminus of adenovirus 2 late mRNA
    • Berget, S. M., Moore, C., and Sharp, P. A. 1977, Spliced segments at the 5′ terminus of adenovirus 2 late mRNA, Proc. Natl Acad. Sci. USA, 74, 3171-3175.
    • (1977) Proc. Natl. Acad. Sci. USA , vol.74 , pp. 3171-3175
    • Berget, S.M.1    Moore, C.2    Sharp, P.A.3
  • 2
    • 0017688583 scopus 로고
    • An amazing sequence arrangement at the 5′ ends of adenovirus 2 messenger RNA
    • Chow, L., Gilinas, R., Broker, T., and Roberts, R. 1977, An amazing sequence arrangement at the 5′ ends of adenovirus 2 messenger RNA, Cell, 12, 1-8.
    • (1977) Cell , vol.12 , pp. 1-8
    • Chow, L.1    Gilinas, R.2    Broker, T.3    Roberts, R.4
  • 3
    • 0023685544 scopus 로고
    • A survey on intron and exon lengths
    • Hawkins, J. D. 1988, A survey on intron and exon lengths, Nucleic Acids Res., 16, 9893-9908.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 9893-9908
    • Hawkins, J.D.1
  • 4
    • 0033178886 scopus 로고    scopus 로고
    • Intron-exon structures of eukaryotic model organisms
    • Deutsch, M. and Long, M. 1999, Intron-exon structures of eukaryotic model organisms. Nucleic Acids Res., 27, 3219-3228.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 3219-3228
    • Deutsch, M.1    Long, M.2
  • 5
    • 0034708480 scopus 로고    scopus 로고
    • The genome sequence of Drosophila melanogaster
    • Adams, M. D., Celniker, S. E., Holt, R. A., et al. 2000, The genome sequence of Drosophila melanogaster, Science, 287, 2185-2195.
    • (2000) Science , vol.287 , pp. 2185-2195
    • Adams, M.D.1    Celniker, S.E.2    Holt, R.A.3
  • 6
    • 0035895505 scopus 로고    scopus 로고
    • The sequence of the human genome
    • Venter, J. C., Adams, M. C., Myers, E. W., et al. 2001, The sequence of the human genome, Science, 291, 1304-1351.
    • (2001) Science , vol.291 , pp. 1304-1351
    • Venter, J.C.1    Adams, M.C.2    Myers, E.W.3
  • 7
    • 0032524383 scopus 로고    scopus 로고
    • Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome
    • Wang, D. G., Fan, J. B., Siao, C. J., et al. 1998, Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome, Science, 280, 1077-1082.
    • (1998) Science , vol.280 , pp. 1077-1082
    • Wang, D.G.1    Fan, J.B.2    Siao, C.J.3
  • 8
    • 0019302053 scopus 로고
    • Construction of a genetic linkage map in man using restriction fragment length polymorphisms
    • Botstein, D., White, R. L., Skolnick, M., et al. 1980, Construction of a genetic linkage map in man using restriction fragment length polymorphisms, Am. J. Hum. Genet., 32, 314-331.
    • (1980) Am. J. Hum. Genet. , vol.32 , pp. 314-331
    • Botstein, D.1    White, R.L.2    Skolnick, M.3
  • 9
    • 0025008570 scopus 로고
    • DNA polymorphism amplified by arbitrary primers are useful as genetic markers
    • Williams, J. G. K., Kubelik, A. R., Livak, K. J., et al. 1990, DNA polymorphism amplified by arbitrary primers are useful as genetic markers, Nucleic Acids Res., 18, 6531-6535.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6531-6535
    • Williams, J.G.K.1    Kubelik, A.R.2    Livak, K.J.3
  • 10
    • 0028834605 scopus 로고
    • AFLP: A new technique for DNA fingerprinting
    • Vos, P., Rogers, R., Bleeker, M., et al. 1995, AFLP: a new technique for DNA fingerprinting, Nucleic Acid Res., 23, 4407-4414.
    • (1995) Nucleic Acid Res. , vol.23 , pp. 4407-4414
    • Vos, P.1    Rogers, R.2    Bleeker, M.3
  • 11
    • 0029240189 scopus 로고
    • Barley microsatellites: Allele variation and mapping
    • Becker, J. and Heun, M. 1995, Barley microsatellites: allele variation and mapping, Plant Mol. Biol., 27, 835-845.
    • (1995) Plant Mol. Biol. , vol.27 , pp. 835-845
    • Becker, J.1    Heun, M.2
  • 12
    • 0028793719 scopus 로고
    • Combined mapping of AFLP and RFLP markers in barley
    • Becker, J., Vos, P., Kuiper, M., et al. 1995, Combined mapping of AFLP and RFLP markers in barley, Mol. Gen. Genet., 249, 65-73.
    • (1995) Mol. Gen. Genet. , vol.249 , pp. 65-73
    • Becker, J.1    Vos, P.2    Kuiper, M.3
  • 13
    • 0034882348 scopus 로고    scopus 로고
    • Sequence-related amplified polymorphism (SRAP) a new marker system based on a simple PCR reaction: Its application to mapping and gene tagging in Brassica
    • Li, G. and Quiros, C. F. 2001, Sequence-related amplified polymorphism (SRAP) a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica, Theor. Appl. Genet., 103, 455-461.
    • (2001) Theor. Appl. Genet. , vol.103 , pp. 455-461
    • Li, G.1    Quiros, C.F.2
  • 14
    • 0035094764 scopus 로고    scopus 로고
    • Variation is the spice of life
    • Kruglyak, L. and Nickerson, D. A. 2001, Variation is the spice of life, Nat. Genet., 27, 234-236.
    • (2001) Nat. Genet. , vol.27 , pp. 234-236
    • Kruglyak, L.1    Nickerson, D.A.2
  • 15
    • 0026600305 scopus 로고
    • Rapid survey of DNA sequence variation in natural populations
    • Lessa, E. P. 1992, Rapid survey of DNA sequence variation in natural populations, Mol. Biol. Evol., 9, 323-330.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 323-330
    • Lessa, E.P.1
  • 16
    • 0028315491 scopus 로고
    • Intron-targeted PCR: A new approach to survey neutral DNA polymorphism in bivalve populations
    • Côrte-Real, H. B. S. M., Dixon, D. R., and Holland, P. W. H. 1994, Intron-targeted PCR: a new approach to survey neutral DNA polymorphism in bivalve populations, Mar. Biol., 120, 407-413.
    • (1994) Mar. Biol. , vol.120 , pp. 407-413
    • Côrte-Real, H.B.S.M.1    Dixon, D.R.2    Holland, P.W.H.3
  • 17
    • 0033106089 scopus 로고    scopus 로고
    • Genetic characterisation of Mytilus galloprovincialis Lmk. in North West Africa using nuclear DNA markers
    • Daguin, C. and Borsa, P. 1999, Genetic characterisation of Mytilus galloprovincialis Lmk. in North West Africa using nuclear DNA markers, J Exp. Mar. Biol. Ecol., 235, 55-65.
    • (1999) J Exp. Mar. Biol. Ecol. , vol.235 , pp. 55-65
    • Daguin, C.1    Borsa, P.2
  • 18
    • 0028169396 scopus 로고
    • Use of an intron length polymorphism to localize the tropoelastin gene to chromosome 5 in a region of linkage conservation with human chromosome 7
    • Wydner, K. S., Sechler, J. L., Boyd, C. D., et al. 1994, Use of an intron length polymorphism to localize the tropoelastin gene to chromosome 5 in a region of linkage conservation with human chromosome 7, Genomics, 23, 125-131.
    • (1994) Genomics , vol.23 , pp. 125-131
    • Wydner, K.S.1    Sechler, J.L.2    Boyd, C.D.3
  • 19
    • 0001829453 scopus 로고
    • Nucleic acids II: The polymerase chain reaction
    • Hillis, D. and Moritz, C. (eds) Sinauer Associates Inc., Sunderland, MA
    • Palumbi, S. R. 1995, Nucleic acids II: the polymerase chain reaction, In: Hillis, D. and Moritz, C. (eds) Molecular Systematics. 2nd edn. Sinauer Associates Inc., Sunderland, MA, pp. 205-247.
    • (1995) Molecular Systematics. 2nd Edn. , pp. 205-247
    • Palumbi, S.R.1
  • 20
    • 0034144380 scopus 로고    scopus 로고
    • Screening for intron-length polymorphisms in penaeid shrimps using exon-primed intron-crossing (EPIC)-PCR
    • Bierne, N., Lehnert, S. A., Bédier, E., et al. 2000, Screening for intron-length polymorphisms in penaeid shrimps using exon-primed intron-crossing (EPIC)-PCR, Mol. Ecol., 9, 233-235.
    • (2000) Mol. Ecol. , vol.9 , pp. 233-235
    • Bierne, N.1    Lehnert, S.A.2    Bédier, E.3
  • 21
    • 0037023384 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
    • Yu, J., Hu, S., Wang, J., et al. 2002, A draft sequence of the rice genome (Oryza sativa L. ssp. indica), Science, 296, 79-92.
    • (2002) Science , vol.296 , pp. 79-92
    • Yu, J.1    Hu, S.2    Wang, J.3
  • 22
    • 0037023349 scopus 로고    scopus 로고
    • A draft sequence of the rice genomes (Oryza sativa L. ssp. japonica)
    • Goff, S. A., Ricke, D., Lan, T. H., et al. 2002, A draft sequence of the rice genomes (Oryza sativa L. ssp. japonica), Science, 296, 92-100.
    • (2002) Science , vol.296 , pp. 92-100
    • Goff, S.A.1    Ricke, D.2    Lan, T.H.3
  • 23
    • 0037624063 scopus 로고    scopus 로고
    • Collection, mapping, and annotation of over 28 000 cDNA clones from japonica rice
    • Kikuchi, S., Satoh, K., Nagata, T., et al. 2003, Collection, mapping, and annotation of over 28 000 cDNA clones from japonica rice, Science, 301, 376-379.
    • (2003) Science , vol.301 , pp. 376-379
    • Kikuchi, S.1    Satoh, K.2    Nagata, T.3
  • 24
    • 0037153190 scopus 로고    scopus 로고
    • The genome sequence and structure of rice chromosome 1
    • Sasaki, T., Matsumoto, T., Yamamoto, K., et al. 2002, The genome sequence and structure of rice chromosome 1, Nature, 420, 312-316.
    • (2002) Nature , vol.420 , pp. 312-316
    • Sasaki, T.1    Matsumoto, T.2    Yamamoto, K.3
  • 25
    • 0037153127 scopus 로고    scopus 로고
    • Sequence and analysis of rice chromosome 4
    • Feng, Q., Zhang, Y., Hao, P., et al. 2002, Sequence and analysis of rice chromosome 4, Nature, 420, 316-320.
    • (2002) Nature , vol.420 , pp. 316-320
    • Feng, Q.1    Zhang, Y.2    Hao, P.3
  • 26
    • 0038581538 scopus 로고    scopus 로고
    • In-depth view of structure, activity, and evolution of rice chromosome 10
    • The Rice Chromosome 10 Sequencing Consortium (2003), In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 300, 1566-1569.
    • (2003) Science , vol.300 , pp. 1566-1569
  • 27
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • International Rice Genome Sequencing Project (2005), The map-based sequence of the rice genome. Nature, 436, 793-800.
    • (2005) Nature , vol.436 , pp. 793-800
  • 28
    • 3543034045 scopus 로고    scopus 로고
    • Development of genome-wide DNA polymorphism database for map-based cloning of rice genes
    • Shen, Y. J., Jiang, H., Jin, J. P., et al. 2004, Development of genome-wide DNA polymorphism database for map-based cloning of rice genes, Plant physiol., 135, 1198-1205.
    • (2004) Plant Physiol. , vol.135 , pp. 1198-1205
    • Shen, Y.J.1    Jiang, H.2    Jin, J.P.3
  • 29
    • 4644353880 scopus 로고    scopus 로고
    • An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments
    • Feltus, F. A., Wan, J., Schulze, S. R., et al. 2004, An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments, Genome Res., 14, 1812-1819.
    • (2004) Genome Res. , vol.14 , pp. 1812-1819
    • Feltus, F.A.1    Wan, J.2    Schulze, S.R.3
  • 30
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul, S., Madden, T., Schaffer, A., et al. 1997, Gapped BLAST and PSI-BLAST: A new generation of protein database search programs, Nucleic Acids. Res., 25, 3389-3402.
    • (1997) Nucleic Acids. Res. , vol.25 , pp. 3389-3402
    • Altschul, S.1    Madden, T.2    Schaffer, A.3
  • 31
    • 0031732094 scopus 로고    scopus 로고
    • A computer program for aligning a cDNA sequence with a genomic DNA sequence
    • Florea, L., Hartzell, G., Zhang, Z., et al. 1998, A computer program for aligning a cDNA sequence with a genomic DNA sequence, Genome Res., 8, 967-974.
    • (1998) Genome Res. , vol.8 , pp. 967-974
    • Florea, L.1    Hartzell, G.2    Zhang, Z.3
  • 32
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • Rice, P., Longden, I., and Bleasby, A. 2000, EMBOSS: The European Molecular Biology Open Software Suite, Trends Genet., 16, 276-277.
    • (2000) Trends Genet. , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 33
    • 0030920610 scopus 로고    scopus 로고
    • Sequence mapping by electronic PCR
    • Schuler, G. D. 1997, Sequence mapping by electronic PCR, Genome Res., 7, 541-550.
    • (1997) Genome Res. , vol.7 , pp. 541-550
    • Schuler, G.D.1
  • 35
    • 0019321718 scopus 로고
    • Rapid isolation of high-molecular- Weight plant DNA
    • Murray, M. G. and Thompson, W. F. 1980, Rapid isolation of high-molecular- weight plant DNA, Nucleic Acids. Res., 8, 4321-4325.
    • (1980) Nucleic Acids. Res. , vol.8 , pp. 4321-4325
    • Murray, M.G.1    Thompson, W.F.2
  • 36
    • 0025743732 scopus 로고
    • Touchdown' PCR to circumvent spurious priming during gene amplification
    • Don, R. H., Cox, P. T., Wainwright, B. J., et al. 1991, 'Touchdown' PCR to circumvent spurious priming during gene amplification, Nucleic Acids. Res., 19, 4008.
    • (1991) Nucleic Acids. Res. , vol.19 , pp. 4008
    • Don, R.H.1    Cox, P.T.2    Wainwright, B.J.3
  • 37
    • 0141885678 scopus 로고    scopus 로고
    • A simple and rapid method used for silver staining and gel preservation
    • Xu, S., Tao, Y., Yang, Z., et al. 2002, A simple and rapid method used for silver staining and gel preservation, Hereditas (Beijing), 24, 335-336.
    • (2002) Hereditas (Beijing) , vol.24 , pp. 335-336
    • Xu, S.1    Tao, Y.2    Yang, Z.3
  • 38
    • 0027302405 scopus 로고
    • Optimizing parental selection for genetic linkage maps
    • Anderson, J. A., Churchill, G. A., Autrique, J. E., et al. 1993, Optimizing parental selection for genetic linkage maps, Genome, 36, 181-186.
    • (1993) Genome , vol.36 , pp. 181-186
    • Anderson, J.A.1    Churchill, G.A.2    Autrique, J.E.3
  • 39
    • 0037394626 scopus 로고    scopus 로고
    • Genome-wide intraspecific DNA-sequence variations in rice
    • Han, B. and Xue, Y. 2003, Genome-wide intraspecific DNA-sequence variations in rice, Curr. Opin. Plant Biol., 6, 134-138.
    • (2003) Curr. Opin. Plant Biol. , vol.6 , pp. 134-138
    • Han, B.1    Xue, Y.2
  • 40
    • 0037173012 scopus 로고    scopus 로고
    • Semidwarf (sd-1), "green revolution" rice, contains a defective gibberellin 20-oxidase gene
    • Wolfgang, S., Marc, H. E., and Peter, M. C. 2002, Semidwarf (sd-1), "green revolution" rice, contains a defective gibberellin 20-oxidase gene, Proc. Natl Acad. Sci. USA, 99, 9043-9048.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 9043-9048
    • Wolfgang, S.1    Marc, H.E.2    Peter, M.C.3
  • 41
    • 34250103509 scopus 로고
    • Isozymes and classification of Asian rice varieties
    • Glaszmann, J. C. 1987, Isozymes and classification of Asian rice varieties, Theor. Appl. Genet., 74, 21-30.
    • (1987) Theor. Appl. Genet. , vol.74 , pp. 21-30
    • Glaszmann, J.C.1
  • 42
    • 0029106640 scopus 로고
    • Classifying japonica rice cultivars with RAPD markers
    • Machill, D. J. 1995, Classifying japonica rice cultivars with RAPD markers, Crop Sci., 35, 889-894.
    • (1995) Crop Sci. , vol.35 , pp. 889-894
    • Machill, D.J.1
  • 43
    • 0036981948 scopus 로고    scopus 로고
    • Genetic differentiation of wild relatives of rice as assessed by RFLP analysis
    • Lu, B. R., Zheng, K. L., Qian, H. R., et al. 2002, Genetic differentiation of wild relatives of rice as assessed by RFLP analysis, Theor. Appl. Genet., 106, 101-106.
    • (2002) Theor. Appl. Genet. , vol.106 , pp. 101-106
    • Lu, B.R.1    Zheng, K.L.2    Qian, H.R.3
  • 44
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., et al. 1997, The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools, Nucleic Acids Res., 24, 4876-4882.
    • (1997) Nucleic Acids Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3


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