메뉴 건너뛰기




Volumn 80, Issue 2, 2005, Pages 129-134

Identification and characterization of Australian wild rice strains of Oryza meridionalis and Oryza rufipogon by SINE insertion polymorphism

Author keywords

Annual and perennial types; Insertion polymorphism; O. meridionalis; O. rufipogon; Rice; SINE

Indexed keywords

ARTICLE; BIOCHEMISTRY; DNA FLANKING REGION; DNA HYBRIDIZATION; GENE INSERTION; GENE LOCUS; GENE SEQUENCE; GENETIC POLYMORPHISM; GENETIC STRAIN; MORPHOLOGY; NONHUMAN; ORYZA MERIDIONALIS; ORYZA RUFIPOGAN; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RICE; SPECIES IDENTIFICATION; STRAIN IDENTIFICATION; TAXONOMY;

EID: 25144519627     PISSN: 13417568     EISSN: None     Source Type: Journal    
DOI: 10.1266/ggs.80.129     Document Type: Article
Times cited : (19)

References (37)
  • 1
    • 0032766702 scopus 로고    scopus 로고
    • Phylogenetic relationships among Oryza species revealed by AFLP markers
    • Aggarwal, R. K., Brar, D. S., Nandi, S., Huang, N., and Khush, G. S. (1999) Phylogenetic relationships among Oryza species revealed by AFLP markers. Theor. Appl. Genet. 98, 1320-1328.
    • (1999) Theor. Appl. Genet. , vol.98 , pp. 1320-1328
    • Aggarwal, R.K.1    Brar, D.S.2    Nandi, S.3    Huang, N.4    Khush, G.S.5
  • 4
    • 0026092321 scopus 로고
    • A human-specific subfamily of Alu sequences
    • Batzer, M. A., and Deininger, P. L. (1991) A human-specific subfamily of Alu sequences. Genomics 9, 481-487.
    • (1991) Genomics , vol.9 , pp. 481-487
    • Batzer, M.A.1    Deininger, P.L.2
  • 5
    • 0034987158 scopus 로고    scopus 로고
    • RAPD, RFLP and SSLP analysis of phylogenetic relationships between cultivated and wild species of rice
    • Bautista, N. S., Solis, R., Kamijima, O., and Ishii, T. (2001) RAPD, RFLP and SSLP analysis of phylogenetic relationships between cultivated and wild species of rice. Genes Genet. Syst. 76, 71-79.
    • (2001) Genes Genet. Syst. , vol.76 , pp. 71-79
    • Bautista, N.S.1    Solis, R.2    Kamijima, O.3    Ishii, T.4
  • 6
    • 0037225254 scopus 로고    scopus 로고
    • Polyphyletic origin of cultivated rice: Based on the interspersion pattern of SINEs
    • Cheng, C., Motohashi, R., Tsuchimoto, S., Ohtsubo, H., and Ohtsubo, E. (2003) Polyphyletic origin of cultivated rice: based on the interspersion pattern of SINEs. Mlo. Biol. Evol. 20, 67-75.
    • (2003) Mlo. Biol. Evol. , vol.20 , pp. 67-75
    • Cheng, C.1    Motohashi, R.2    Tsuchimoto, S.3    Ohtsubo, H.4    Ohtsubo, E.5
  • 7
    • 0036814150 scopus 로고    scopus 로고
    • Evolutionary relationships among rice species with AA genome based on SINE insertion analysis
    • Cheng, C., Tsuchimoto, S., Ohtsubo, H., and Ohtsubo, E. (2002) Evolutionary relationships among rice species with AA genome based on SINE insertion analysis. Genes Genet. Syst. 77, 323-334.
    • (2002) Genes Genet. Syst. , vol.77 , pp. 323-334
    • Cheng, C.1    Tsuchimoto, S.2    Ohtsubo, H.3    Ohtsubo, E.4
  • 8
    • 25144511798 scopus 로고
    • Studies in the Gramineae. XVII, West Africa wild rice
    • Clayton, W. D. (1968) Studies in the Gramineae. XVII, West Africa wild rice. Kew. Bull. 21, 485-488.
    • (1968) Kew. Bull. , vol.21 , pp. 485-488
    • Clayton, W.D.1
  • 9
    • 0033452726 scopus 로고    scopus 로고
    • Phylogeny of rice genome with emphasis on origins of allotetraploid species
    • USA
    • Ge, S., Sang, T., Lu, B.-R., and Hong, D.-Y. (1999) Phylogeny of rice genome with emphasis on origins of allotetraploid species. Proc. Natl. Acad. Sci. USA 96, 14400-14405.
    • (1999) Proc. Natl. Acad. Sci. , vol.96 , pp. 14400-14405
    • Ge, S.1    Sang, T.2    Lu, B.-R.3    Hong, D.-Y.4
  • 10
    • 0027976554 scopus 로고
    • Retrotransposition of a plant SINE into the wx locus during evolution of rice
    • Hirano, H. Y., Mochizuki, K., Umeda, M., Ohtsubo, H., Ohtsubo, E., and Sano, Y. (1994) Retrotransposition of a plant SINE into the wx locus during evolution of rice. J. Mol. Evol. 38, 132-137.
    • (1994) J. Mol. Evol. , vol.38 , pp. 132-137
    • Hirano, H.Y.1    Mochizuki, K.2    Umeda, M.3    Ohtsubo, H.4    Ohtsubo, E.5    Sano, Y.6
  • 11
    • 0029997149 scopus 로고    scopus 로고
    • Phylogenetic relationships in A-genome species of rice as revealed by RAPD analysis
    • Ishii, T., Nakano, T., Maeda, H., and Kamijima, O. (1996) Phylogenetic relationships in A-genome species of rice as revealed by RAPD analysis. Genes Genet. Syst. 71, 195-201.
    • (1996) Genes Genet. Syst. , vol.71 , pp. 195-201
    • Ishii, T.1    Nakano, T.2    Maeda, H.3    Kamijima, O.4
  • 12
    • 0034886886 scopus 로고    scopus 로고
    • Nuclear- and chloroplast-microsatellite variation in A-genome species of rice
    • Ishii, T., Xu, Y., and McCouch, S. R. (2001) Nuclear- and chloroplast-microsatellite variation in A-genome species of rice. Genome 44, 658-666.
    • (2001) Genome , vol.44 , pp. 658-666
    • Ishii, T.1    Xu, Y.2    McCouch, S.R.3
  • 13
    • 0032694962 scopus 로고    scopus 로고
    • A tourist element in the 5′-flanking region of the catalase gene CatA reveals evolutionary relationships among Oryza species with various genome types
    • Iwamoto, M., Nagashima, H., Nagamine, T., Higo, H, and Higo, K. (1999) A tourist element in the 5′-flanking region of the catalase gene CatA reveals evolutionary relationships among Oryza species with various genome types. Mol. Gen. Genet. 262, 493-500.
    • (1999) Mol. Gen. Genet. , vol.262 , pp. 493-500
    • Iwamoto, M.1    Nagashima, H.2    Nagamine, T.3    Higo, H.4    Higo, K.5
  • 14
    • 0033916763 scopus 로고    scopus 로고
    • Genetic diversity and phylogenetic relationship as revealed by inter simple sequence repeat (ISSR) polymorphism in the genus Oryza
    • Joshi, S. P., Gupta, V. S., Aggarwal, R. K., Ranjekar, P. K., and Brar, D. S. (2000) Genetic diversity and phylogenetic relationship as revealed by inter simple sequence repeat (ISSR) polymorphism in the genus Oryza. Theor. Appl. Genet. 100, 1311-1320.
    • (2000) Theor. Appl. Genet. , vol.100 , pp. 1311-1320
    • Joshi, S.P.1    Gupta, V.S.2    Aggarwal, R.K.3    Ranjekar, P.K.4    Brar, D.S.5
  • 15
    • 0033844587 scopus 로고    scopus 로고
    • Inter- and intra-specific distribution of Stowaway transposable elements in AA genome of wild rice
    • Kanazawa, A., Akimoto, A., Morishima, H., and Shimamoto, Y. (2000) Inter- and intra-specific distribution of Stowaway transposable elements in AA genome of wild rice. Theor. Appl. Genet. 101, 327-335.
    • (2000) Theor. Appl. Genet. , vol.101 , pp. 327-335
    • Kanazawa, A.1    Akimoto, A.2    Morishima, H.3    Shimamoto, Y.4
  • 16
    • 0031239092 scopus 로고    scopus 로고
    • Origin, dispersal, cultivation and variation of rice
    • Khush, G. S. (1997) Origin, dispersal, cultivation and variation of rice. Plant Mol. Biol. 35, 25-34.
    • (1997) Plant Mol. Biol. , vol.35 , pp. 25-34
    • Khush, G.S.1
  • 17
    • 0027368062 scopus 로고
    • Classification and relationships of rice strains with AA genome by identification of transposable elements at nine loci
    • Mochizuki, K., Ohtsubo, H., Hirano, H., Sano, Y., and Ohtsubo, E. (1993) Classification and relationships of rice strains with AA genome by identification of transposable elements at nine loci. Jpn. J. Genet. 68, 205-217.
    • (1993) Jpn. J. Genet. , vol.68 , pp. 205-217
    • Mochizuki, K.1    Ohtsubo, H.2    Hirano, H.3    Sano, Y.4    Ohtsubo, E.5
  • 18
    • 0026645642 scopus 로고
    • Characterization of a plant SINE, p-SINE1, in rice genomes
    • Mochizuki, K., Umeda, M., Ohtsubo, H., and Ohtsubo, E. (1992) Characterization of a plant SINE, p-SINE1, in rice genomes. Jpn. J. Genet. 67, 155-166.
    • (1992) Jpn. J. Genet. , vol.67 , pp. 155-166
    • Mochizuki, K.1    Umeda, M.2    Ohtsubo, H.3    Ohtsubo, E.4
  • 19
    • 0001143843 scopus 로고
    • Directions of differentiation in populations of wild rice, Oryza perennis and O. sativa F. spontanea
    • Morishima, H., Oka, H. I., and Chang, W. T. (1961) Directions of differentiation in populations of wild rice, Oryza perennis and O. sativa F. spontanea. Evolution 15, 326-339.
    • (1961) Evolution , vol.15 , pp. 326-339
    • Morishima, H.1    Oka, H.I.2    Chang, W.T.3
  • 20
    • 0030819612 scopus 로고    scopus 로고
    • Structures and distribution of p-SINE1 members in rice genomes
    • Motohashi, R., Mochizuki, K., Ohtsubo, H., and Ohtsubo, E. (1997) Structures and distribution of p-SINE1 members in rice genomes. Theor. Appl. Genet. 95, 359-368.
    • (1997) Theor. Appl. Genet. , vol.95 , pp. 359-368
    • Motohashi, R.1    Mochizuki, K.2    Ohtsubo, H.3    Ohtsubo, E.4
  • 21
    • 0001231343 scopus 로고
    • Origin and cytogenetics of rice
    • Nayar, N. M. (1973) Origin and cytogenetics of rice. Advances in Genetics 17, 153-292.
    • (1973) Advances in Genetics , vol.17 , pp. 153-292
    • Nayar, N.M.1
  • 22
    • 84990442906 scopus 로고
    • The recognition of a new species of rice (Oryza) from Australia
    • Ng, N. Q., Hawkes, J. G. and Williams, J. T. (1981) The recognition of a new species of rice (Oryza) from Australia. Bot. Jour. Linn. Soc. 82, 327-330.
    • (1981) Bot. Jour. Linn. Soc. , vol.82 , pp. 327-330
    • Ng, N.Q.1    Hawkes, J.G.2    Williams, J.T.3
  • 23
    • 0033621101 scopus 로고    scopus 로고
    • Phylogenetic relationships among cetartiodactyls based on insertions of short and long interspersed elements: Hippopotamuses are the closest extant relatives of whales
    • USA
    • Nikaido, M., Rooney, A. P., and Okada, N. (1999) Phylogenetic relationships among cetartiodactyls based on insertions of short and long interspersed elements: hippopotamuses are the closest extant relatives of whales. Proc. Natl. Acad. Sci. USA 96, 10261-10266.
    • (1999) Proc. Natl. Acad. Sci. , vol.96 , pp. 10261-10266
    • Nikaido, M.1    Rooney, A.P.2    Okada, N.3
  • 24
    • 0001414578 scopus 로고
    • SINEs: Short interspersed repeated elements of the eukaryotic genome
    • Okada, N. (1991) SINEs: short interspersed repeated elements of the eukaryotic genome. Trends Ecol. Evol. 6, 358-361.
    • (1991) Trends Ecol. Evol. , vol.6 , pp. 358-361
    • Okada, N.1
  • 25
    • 0042208126 scopus 로고    scopus 로고
    • Genetic variations of AA genome Oryza species measured by MITE-AFLP
    • Park, K. C., Kim, N. H., Cho, Y. S., Kang, K. H., Lee, J. K., and Kim, N. S. (2003) Genetic variations of AA genome Oryza species measured by MITE-AFLP. Theor. Appl. Genet. 107, 203-209.
    • (2003) Theor. Appl. Genet. , vol.107 , pp. 203-209
    • Park, K.C.1    Kim, N.H.2    Cho, Y.S.3    Kang, K.H.4    Lee, J.K.5    Kim, N.S.6
  • 26
    • 0346038786 scopus 로고    scopus 로고
    • A comparative study of genetic relationships among the AA-genome Oryza species using RAPS and SSR markers
    • Ren, F., Lu, B., Li, S., Huang, J., and Zhu, Y. (2003) A comparative study of genetic relationships among the AA-genome Oryza species using RAPS and SSR markers. Theor. Appl. Genet. 108, 113-120.
    • (2003) Theor. Appl. Genet. , vol.108 , pp. 113-120
    • Ren, F.1    Lu, B.2    Li, S.3    Huang, J.4    Zhu, Y.5
  • 27
    • 51249182993 scopus 로고
    • Intermediate perennial-annual populations of Oryza perennis found in Thailand and their evolutionary significance
    • Tokyo
    • Sano, Y., Morishima, H. and Oka, H. I. (1980) Intermediate perennial-annual populations of Oryza perennis found in Thailand and their evolutionary significance. Bot. Mag. Tokyo 93, 291-305.
    • (1980) Bot. Mag. , vol.93 , pp. 291-305
    • Sano, Y.1    Morishima, H.2    Oka, H.I.3
  • 28
    • 0027026168 scopus 로고
    • Transcriptional regulation and transpositional selection of active SINE sequence
    • Schmid, C., and Maraia, R. (1992) Transcriptional regulation and transpositional selection of active SINE sequence. Curr. Opin. Genet. Dev. 2, 874-882
    • (1992) Curr. Opin. Genet. Dev. , vol.2 , pp. 874-882
    • Schmid, C.1    Maraia, R.2
  • 29
    • 0002864863 scopus 로고
    • Evolutionary relationships in the sativa group of Oryza based on isozyme data
    • Second, G. (1985) Evolutionary relationships in the sativa group of Oryza based on isozyme data. Genet. Set. Evol. 17, 89-114.
    • (1985) Genet. Set. Evol. , vol.17 , pp. 89-114
    • Second, G.1
  • 30
    • 0033964296 scopus 로고    scopus 로고
    • SINE insertions: Powerful tools for molecular systematics
    • Shedlock, A. M., and Okada, N. (2000) SINE insertions: powerful tools for molecular systematics. BioEssays 22, 148-160.
    • (2000) BioEssays , vol.22 , pp. 148-160
    • Shedlock, A.M.1    Okada, N.2
  • 31
    • 0031955141 scopus 로고    scopus 로고
    • A novel family of short interspersed repetitive elements (SINEs) from cichlids: The pattern of insertion of SINEs at orthologous loci support the proposed monophyly of four major groups of cichlid fishes in Lake Tanganyika
    • Takahashi, K., Terai, Y., Nishida, M., and Okada, N. (1998) A novel family of short interspersed repetitive elements (SINEs) from cichlids: the pattern of insertion of SINEs at orthologous loci support the proposed monophyly of four major groups of cichlid fishes in Lake Tanganyika. Mol. Biol. Evol. 15, 391-407.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 391-407
    • Takahashi, K.1    Terai, Y.2    Nishida, M.3    Okada, N.4
  • 32
    • 0025936548 scopus 로고
    • Diversification of the rice Waxy gene by insertion of mobile DNA elements into introns
    • Umeda, M., Ohtsubo, H., and Ohtsubo, E. (1991) Diversification of the rice Waxy gene by insertion of mobile DNA elements into introns. Jpn. J. Genet. 66, 569-586.
    • (1991) Jpn. J. Genet. , vol.66 , pp. 569-586
    • Umeda, M.1    Ohtsubo, H.2    Ohtsubo, E.3
  • 33
    • 0036724312 scopus 로고    scopus 로고
    • Transposition of cyanobacterium insertion element ISY100 in Escherichia coli
    • Urasaki, A., Sekine, Y., and Ohtsubo, E. (2002) Transposition of cyanobacterium insertion element ISY100 in Escherichia coli. J. Bacteriol. 184, 5104-5112
    • (2002) J. Bacteriol. , vol.184 , pp. 5104-5112
    • Urasaki, A.1    Sekine, Y.2    Ohtsubo, E.3
  • 35
    • 34249840289 scopus 로고
    • Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs
    • Wang, Z. Y., Second, G., and Tanksley, S. D. (1992) Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs. Theor. Appl. Genet. 83, 565-581.
    • (1992) Theor. Appl. Genet. , vol.83 , pp. 565-581
    • Wang, Z.Y.1    Second, G.2    Tanksley, S.D.3
  • 36
    • 0022555861 scopus 로고
    • Nonviral retroposons: Genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information
    • Weimer, A. M., Deomomger, P. L. and Efstratiadis, A. (1986) Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information. Annu. Rev. Biochem. 55, 631-661
    • (1986) Annu. Rev. Biochem. , vol.55 , pp. 631-661
    • Weimer, A.M.1    Deomomger, P.L.2    Efstratiadis, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.