Transverse relaxation optimized triple-resonance NMR experiments for nucleic acids

Journal of Biomolecular NMR

Volumn 16, Issue 4, 2000, Pages 291-302

  Fiala, Radovan ^a   Czernek, Jiří ^a,b   Sklenář, Vladimír ^a  

^a MASARYK UNIVERSITY   (Czech Republic)

^b INSTITUTE OF MACROMOLECULAR CHEMISTRY   (Czech Republic)

Author keywords

13C CSA; 13C relaxation; HCN experiments; RNA; TROSY

Indexed keywords

NUCLEIC ACID; RNA;

ANISOTROPY; ARTICLE; CARBON NUCLEAR MAGNETIC RESONANCE; DIPOLE; MAGNETIC FIELD; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; NUCLEIC ACID ANALYSIS; POLARIZATION; PRIORITY JOURNAL; PROTON NUCLEAR MAGNETIC RESONANCE; QUANTUM CHEMISTRY;

MAGNETICS; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; NUCLEOSIDES; QUANTUM THEORY; RNA;

EID: 0034073418     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1008388400601     Document Type: Article

References (58)

1. Andersson, P., Annila, A. and Otting, G. (1998) J. Magn. Reson., 133, 364-367.
2. Batey, R.T., Inada, M., Kujawinski, E., Puglisi, J.D. and Williamson, J.R. (1992) Nucleic Acids Res., 20, 4515-4523.
3. Bax, A., Kay, L.E., Sparks, S.W. and Torchia, D.A. (1989) J. Am. Chem. Soc., 111, 408-409.
4. Becke, A.D. (1993) J. Chem. Phys., 98, 5648-5652.
5. Brutscher, B., Boisbouvier, J., Pardi, A., Marion, D. and Simorre, J.-P. (1998) J. Am. Chem. Soc., 120, 11845-11851.
6. Cavanagh, J., Fairbrother, W.J., Palmer, A.G. and Skelton, N.J. (1996) Protein NMR Spectroscopy: Principles and Practice, Academic Press, San Diego, CA, p. 269.
7. Dejaegere, A. and Case, D.A. (1998) J. Phys. Chem., A102, 5280-5289.
8. Discover 96.0 (1996) User Guide, version 4.0.0, Molecular Simulations, San Diego, CA.
9. Farmer, B.T., Müller, L., Nikonowicz, E.P. and Pardi, A. (1993) J. Am. Chem. Soc., 115, 11040-11041.
10. Farmer, B.T., Müller, L., Nikonowicz, E.P. and Pardi, A. (1994) J. Biomol. NMR, 4, 129-133.
11. Fiala, R., Jiang, F. and Patel, D.J. (1996) J. Am. Chem. Soc., 118, 689-690.
12. Fiala, R., Jiang, F. and Sklenář, V. (1998) J. Biomol. NMR, 12, 373-383.
13. Fiolhais, C. (1992) Phys. Rev., B46, 6671-6687.
14. Frish, M.J., Trucks, G.W., Schlegel, H.B., Gill, P.M.W., Johnson, B.G., Robb, M.A., Cheeseman, J.R., Keith, T., Petersson, G.A., Montgomery, J.A., Raghavachari, K., Al-Laham, M.A., Zakrzewski, V.G., Ortiz, J.V., Foresman, J.B., Cioslowski, J., Stefanov, B.B., Nanayakkara, A., Challacombe, M., Peng, C.Y., Ayala, P.Y., Chen, W., Wong, N.M., Andres, J.L., Replongle, E.S., Gomperts, R., Martin, R.L., Fox, D.J., Binkley, J.S., Defrees, D.J., Baker, J., Stewart, J.P., Head-Gordon, M., Gonzales, C. and Pople, J.A. (1995) Gaussian 94 Revision C.2, Gaussian, Inc., Pittsburgh, PA.
15. Fushman, D. and Cowburn, D. (1999) J. Biomol. NMR, 13, 139-147.
16. Goldman, M. (1984) J. Magn. Reson., 60, 437-452.
17. Goljer, I. and Bolton, P.H. (1994) In Two-Dimensional Spectroscopy. Applications for Chemists and Biochemists (Eds, Croasmun, W.R. and Carlson, R.M.K.), VCH Publishers, New York, NY, pp. 699-740.
18. Griffey, R.H. and Redfield, A.G. (1987) Q. Rev. Biophys., 19, 51-82.
19. Grzesiek, S. and Bax, A. (1995) J. Biomol. NMR, 6, 335-339.
20. Hehre, W.J., Radom, L., Schleyer, P.v.R. and Pople, J.A. (1985) Ab initio Molecular Orbital Theory, Wiley-Interscience, New York, NY.
21. Heus, H.A., Wijmenga, S.S., van de Ven, F.J.M. and Hilbers, C.W. (1994) J. Am. Chem. Soc., 116, 4983-4984.
22. Jiang, F., Fiala, R., Live, D., Kumar, R.A. and Patel, D.J. (1996) Biochemistry, 35, 13250-13266.
23. Klooster, W.T., Ruble, J.R. and Craven, B.M. (1991) Acta Crystallogr., B47, 376-383.
24. Kutzelnigg, W., Fleisher, U. and Schindler, M. (1990) NMR Basic Principles and Progress, Vol. 23, Springer-Verlag, Berlin, Heidelberg, pp. 167-262.
25. Loria, J.P., Rance, M. and Palmer III, A.G. (1999) J. Magn. Reson., 141, 180-184.
26. Malkin, V.G., Malkina, O.L., Casida, M.E. and Salahub, D.R. (1994a) J. Am. Chem. Soc., 116, 5898-5908.
27. Malkin, V.G., Malkina, O.L. and Salahub, D.R. (1994b) MASTER-CS Program, Université de Montreal, Montreal, Canada.
28. Malkin, V.G., Malkina, O.L., Eriksson, L.A. and Salahub, D.R. (1995) In Theoretical and Computational Chemistry, Vol. 2 (Eds, Seminario, J.M. and Politzer, P.), Elsevier, Amsterdam, pp. 273-401.
29. Marino, J.P., Diener, J.L., Moore, P.B. and Griesinger, C. (1987) J. Am. Chem. Soc., 119, 7361-7366.
30. Marino, J.P., Schwalbe, H., Anklin, C., Bermel, W., Crothers, D.M. and Griesinger, C. (1995) J. Biomol. NMR, 5, 87-92.
31. Michnicka, M.J., Harper, J.W. and King, G.C. (1993) Biochemistry, 32, 395-400.
32. Nikonowicz, E.P., Sirr, A., Legault, P., Jucker, F.M., Baer, L.M. and Pardi, A. (1992) Nucleic Acids Res., 20, 4507-4513.
33. Peng, J.W. and Wagner, G. (1994) Methods Enzymol., 239, 563-596.
34. Perdew, J.P. and Wang, Y. (1992) Phys. Rev., B45, 13244-13249.
35. Perdew, J.P., Chevary, J.A., Vosko, S.H., Jackson, K.A., Pederson, M.R., Singh, D.J., Pervushin, K., Riek, R., Wider, G. and Wüthrich, K. (1997) Proc. Natl. Acad. Sci. USA, 94, 12366-12371.
36. Pervushin, K., Ono, A., Fernández, C., Szyperski, T., Kainosho, M. and Wüthrich, K. (1998a) Proc. Natl. Acad. Sci. USA, 95, 14147-14151.
37. Pervushin, K., Riek, R., Wider, G. and Wüthrich, K. (1998b) J. Am. Chem. Soc., 120, 6394-6400.
38. Pervushin, K., Wider, G. and Wüthrich, K. (1998c) J. Biomol. NMR, 12, 345-348.
39. Ramachandran, R., Sich, C., Grüne, M., Soskic, V and Brown, L.R. (1996) J. Biomol. NMR, 7, 251-255.
40. Rance, M., Loria, J.P. and Palmer, A.G. (1999) J. Magn. Reson., 136, 92-101.
41. Salzmann, M., Pervushin, K., Wider, G., Senn, H. and Wüthrich, K. (1998) Proc. Natl. Acad. Sci. USA, 95, 13585-13590.
42. Salzmann, M., Wider, G., Pervushin, K., Senn, H. and Wüthrich, K. (1999) J. Am. Chem. Soc., 121, 844-848.
43. Shaka, A.J., Barker, R and Freeman, R. (1985) J. Magn. Reson., 64, 547-552.
44. Simorre, J.-P., Zimmermann, G.R., Pardi, A., Farmer II, B.T. and Mueller, L. (1995) J. Biomol. NMR, 6, 427-432.
45. Simorre, J.-P., Zimmermann, G.R., Mueller, L. and Pardi, A. (1996a) J. Biomol. NMR, 7, 153-156.
46. Simorre, J.-P., Zimmermann, G.R., Mueller, L. and Pardi, A. (1996b) J. Am. Chem. Soc., 118, 5316-5317.
47. Sitkoff, D. and Case, D.A. (1998) Prog. NMR Spectrosc., 32, 165-229.
48. Sklenář, V., Peterson, R.D., Rejante, M.R., Wang, E. and Feigon, J. (1993a) J. Am. Chem. Soc., 115, 12181-12182.
49. Sklenář, V., Peterson, R.D., Rejante, M.R. and Feigon, J. (1993b) J. Biomol. NMR, 3, 721-727.
50. Sklenář, V., Dieckmann, T., Butcher, S.E. and Feigon, J. (1996) J. Biomol. NMR, 7, 83-87.
51. Sklenář, V., Dieckmann, T., Butcher, S.E. and Feigon, J. (1998) J. Magn. Reson., 130, 119-124.
52. Sörensen, O.W., Eich, G.W., Levitt, M.H., Bodenhausen, G. and Ernst, R.R. (1983) Prog. NMR Spectrosc., 16, 163-192.
53. Tate, S., Ono, A. and Kainosho, M. (1994) J. Am. Chem. Soc., 116, 5977-5978.
54. Tate, S., Ono, A. and Kainosho, M. (1995) J. Magn. Reson., B106, 89-91.
55. Varani, G., Aboul-ela, F., Alain, F. and Gubster, C.C. (1995) J. Biomol. NMR, 5, 315-320.
56. Weigelt, J. (1998) J. Am. Chem. Soc., 120, 10778-10779.
57. Wijmenga, S.S., Heus, H.A., Leeuw, H.A.E., Hope, H., van der Graaf, M. and Hilbers, C.W. (1995) J. Biomol. NMR, 5, 82-86.
58. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, Wiley, New York, NY.