Periostin shows increased evolutionary plasticity in its alternatively spliced region

BMC Evolutionary Biology

Volumn 10, Issue 1, 2010, Pages

  Hoersch, Sebastian ^a,b   Andrade Navarro, Miguel A ^b  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b MAX DELBRÜCK CENTER FOR MOLECULAR MEDICINE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; BACTERIUM; BONE; CANCER; EVOLUTIONARY BIOLOGY; GENOME; HUMAN EVOLUTION; PROTEIN; RODENT; TELEOST;

BACTERIA (MICROORGANISMS); TELEOSTEI; VERTEBRATA;

CELL ADHESION MOLECULE; POSTN PROTEIN, HUMAN;

ALTERNATIVE RNA SPLICING; AMINO ACID SEQUENCE; ANIMAL; ARTICLE; BIOLOGY; EXON; GENETICS; HUMAN; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PHYLOGENY; SEQUENCE ALIGNMENT; VERTEBRATE;

ALTERNATIVE SPLICING; AMINO ACID SEQUENCE; ANIMALS; CELL ADHESION MOLECULES; COMPUTATIONAL BIOLOGY; EVOLUTION, MOLECULAR; EXONS; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ALIGNMENT; VERTEBRATES;

EID: 77149128362     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-10-30     Document Type: Article

References (85)

1. Osteoblast-specific factor 2: cloning of a putative bone adhesion protein with homology with the insect protein fasciclin I. S Takeshita R Kikuno K Tezuka E Amann, Biochem J 1993 294 Pt 1 271 278 8363580
2. Identification and characterization of a novel protein, periostin, with restricted expression to periosteum and periodontal ligament and increased expression by transforming growth factor beta. K Horiuchi N Amizuka S Takeshita, et al. J Bone Miner Res 1999 14 1239 1249 10.1359/jbmr.1999.14.7.1239 10404027
3. A novel mechanism for the regulation of osteoblast differentiation: transcription of periostin, a member of the fasciclin I family, is regulated by the bHLH transcription factor, twist. A Oshima H Tanabe T Yan, et al. J Cell Biochem 2002 86 792 804 10.1002/jcb.10272 12210745
4. Periostin is expressed within the developing teeth at the sites of epithelial-mesenchymal interaction. A Kruzynska-Frejtag J Wang M Maeda, et al. Dev Dyn 2004 229 857 868 10.1002/dvdy.10453 15042709
5. Immunohistochemical localization of periostin in tooth and its surrounding tissues in mouse mandibles during development. H Suzuki N Amizuka I Kii, et al. Anat Rec A Discov Mol Cell Evol Biol 2004 281 1264 1275 10.1002/ar.a.20080 15386274
6. periostin null mice exhibit dwarfism, incisor enamel defects, and an early-onset periodontal disease-like phenotype. H Rios SV Koushik H Wang, et al. Mol Cell Biol 2005 25 11131 11144 10.1128/MCB.25.24.11131-11144.2005 16314533
7. Functional role of periostin in development and wound repair: implications for connective tissue disease. DW Hamilton, J Cell Commun Signal 2008 2 9 17 10.1007/s12079-008-0023-5 18642132
8. Periostin: novel diagnostic and therapeutic target for cancer. Y Kudo BSMS Siriwardena H Hatano I Ogawa T Takata, Histol Histopathol 2007 22 1167 1174 17616943
9. The multifaceted role of periostin in tumorigenesis. K Ruan S Bao G Ouyang, Cell Mol Life Sci 2009 66 2219 2230 10.1007/s00018-009-0013-7 19308325
10. Periostin family of proteins: therapeutic targets for heart disease. J Litvin S Zhu R Norris R Markwald, Anat Rec A Discov Mol Cell Evol Biol 2005 287 1205 1212 16240445
11. Periostin and myocardial repair, regeneration, and recovery. GW Dorn, N Engl J Med 2007 357 1552 1554 10.1056/NEJMcibr074816 17928607
12. Periostin: more than just an adhesion molecule. TK Borg R Markwald, Circ Res 2007 101 230 231 10.1161/CIRCRESAHA.107.159103 17673682
13. Periostin as a heterofunctional regulator of cardiac development and disease. SJ Conway JD Molkentin, Curr Genomics 2008 9 548 555 10.2174/138920208786847917 19516962
14. Periostin is essential for cardiac healing after acute myocardial infarction. M Shimazaki K Nakamura I Kii, et al. J Exp Med 2008 205 295 303 10.1084/jem.20071297 18208976
15. Genetic manipulation of periostin expression reveals a role in cardiac hypertrophy and ventricular remodeling. T Oka J Xu RA Kaiser, et al. Circ Res 2007 101 313 321 10.1161/CIRCRESAHA.107.149047 17569887
16. Periostin and periostin-like factor in the human heart: possible therapeutic targets. J Litvin A Blagg A Mu, et al. Cardiovasc Pathol 2006 15 24 32 10.1016/j.carpath.2005.09.001 16414453
17. Transduction of a mesenchyme-specific gene periostin into 293T cells induces cell invasive activity through epithelial-mesenchymal transformation. W Yan R Shao, J Biol Chem 2006 281 19700 19708 10.1074/jbc.M601856200 16702213
18. Prognostic significance of epithelial-mesenchymal and mesenchymal-epithelial transition protein expression in non-small cell lung cancer. A Soltermann V Tischler S Arbogast, et al. Clin Cancer Res 2008 14 7430 7437 10.1158/1078-0432.CCR-08-0935 19010860
19. Periostin (an osteoblast-specific factor) is expressed within the embryonic mouse heart during valve formation. A Kruzynska-Frejtag M Machnicki R Rogers RR Markwald SJ Conway, Mech Dev 2001 103 183 188 10.1016/S0925-4773(01) 00356-2 11335131
20. Periostin regulates atrioventricular valve maturation. RA Norris RA Moreno-Rodriguez Y Sugi, et al. Dev Biol 2008 316 200 213 10.1016/j.ydbio.2008. 01.003 18313657
21. Periostin promotes a fibroblastic lineage pathway in atrioventricular valve progenitor cells. RA Norris JD Potts MJ Yost, et al. Dev Dyn 2009 238 1052 1063 10.1002/dvdy.21933 19334280
22. Lack of periostin leads to suppression of Notch1 signaling and calcific aortic valve disease. TV Tkatchenko RA Moreno-Rodriguez SJ Conway, et al. Physiol Genomics 2009 39 160 168 10.1152/physiolgenomics.00078.2009 19723774
23. Sequence analysis and neuronal expression of fasciclin I in grasshopper and Drosophila. K Zinn L McAllister CS Goodman, Cell 1988 53 577 587 10.1016/0092-8674(88)90574-0 3370670
24. Phosphatidylinositol-3-kinase signaling mediates vascular smooth muscle cell expression of periostin in vivo and in vitro. G Li S Oparil JM Sanders, et al. Atherosclerosis 2006 188 292 300 10.1016/j.atherosclerosis.2005.11.002 16325820
25. Periostin is required for maturation and extracellular matrix stabilization of noncardiomyocyte lineages of the heart. P Snider RB Hinton RA Moreno-Rodriguez, et al. Circ Res 2008 102 752 760 10.1161/CIRCRESAHA.107.159517 18296617
26. Periostin induces proliferation of human autosomal dominant polycystic kidney cells through alphaV-integrin receptor. DP Wallace MT Quante GA Reif, et al. Am J Physiol Renal Physiol 2008 295 1463 1471 10.1152/ajprenal.90266.2008 18753297
27. Patterns of gene expression associated with BMP-2-induced osteoblast and adipocyte differentiation of mesenchymal progenitor cell 3T3-F442A. X Ji D Chen C Xu, et al. J Bone Miner Metab 2000 18 132 139 10.1007/s007740050103 10783846
28. BMP-2 induces cell migration and periostin expression during atrioventricular valvulogenesis. K Inai RA Norris S Hoffman RR Markwald Y Sugi, Dev Biol 2008 315 383 396 10.1016/j.ydbio.2007.12.028 18261719
29. Periostin secreted by epithelial ovarian carcinoma is a ligand for alpha(V)beta(3) and alpha(V)beta(5) integrins and promotes cell motility. L Gillan D Matei DA Fishman, et al. Cancer Res 2002 62 5358 5364 12235007
30. Periostin potently promotes metastatic growth of colon cancer by augmenting cell survival via the Akt/PKB pathway. S Bao G Ouyang X Bai, et al. Cancer Cell 2004 5 329 339 10.1016/S1535-6108(04)00081-9 15093540
31. Periostin promotes invasiveness and resistance of pancreatic cancer cells to hypoxia-induced cell death: role of the beta4 integrin and the PI3k pathway. P Baril R Gangeswaran PC Mahon, et al. Oncogene 2007 26 2082 2094 10.1038/sj.onc.1210009 17043657
32. Periostin promotes atrioventricular mesenchyme matrix invasion and remodeling mediated by integrin signaling through Rho/PI 3-kinase. JT Butcher RA Norris S Hoffman CH Mjaatvedt RR Markwald, Dev Biol 2007 302 256 266 10.1016/j.ydbio.2006.09.048 17070513
33. Periostin promotes atrioventricular mesenchyme matrix invasion and remodeling mediated by integrin signaling through Rho/PI 3-kinase. JT Butcher RA Norris S Hoffman CH Mjaatvedt RR Markwald, Dev Biol 2007 302 256 266 10.1016/j.ydbio.2006.09.048 17070513
34. EMI, a novel cysteine-rich domain of EMILINs and other extracellular proteins, interacts with the gC1q domains and participates in multimerization. R Doliana S Bot P Bonaldo A Colombatti, FEBS Lett 2000 484 164 168 10.1016/S0014-5793(00)02140-2 11068053
35. Periostin regulates collagen fibrillogenesis and the biomechanical properties of connective tissues. RA Norris B Damon V Mironov, et al. J Cell Biochem 2007 101 695 711 10.1002/jcb.21224 17226767
36. Corneal dystrophy-associated H124H mutation disrupts TGFBI interaction with periostin and causes mislocalization to the lysosome. B Kim JA Olzmann S Choi, et al. J Biol Chem 2009 284 19580 19591 10.1074/jbc.M109.013607 19478074
37. Expression and characterization of murine osteoblast-specific factor 2 (OSF-2) in a baculovirus expression system. T Sugiura H Takamatsu A Kudo E Amann, Protein Expr Purif 1995 6 305 311 10.1006/prep.1995.1040 7663166
38. Periostin: a novel component of subepithelial fibrosis of bronchial asthma downstream of IL-4 and IL-13 signals. G Takayama K Arima T Kanaji, et al. J Allergy Clin Immunol 2006 118 98 104 10.1016/j.jaci.2006.02.046 16815144
39. Zebrafish periostin is required for the adhesion of muscle fiber bundles to the myoseptum and for the differentiation of muscle fibers. H Kudo N Amizuka K Araki K Inohaya A Kudo, Dev Biol 2004 267 473 487 10.1016/j.ydbio.2003.12.007 15013807
40. Periostin, a member of a novel family of vitamin K-dependent proteins, is expressed by mesenchymal stromal cells. DL Coutu JH Wu A Monette, et al. J Biol Chem 2008 283 17991 18001 10.1074/jbc.M708029200 18450759
41. Identification of motifs for cell adhesion within the repeated domains of transforming growth factor-beta-induced gene, betaig-h3. JE Kim SJ Kim BH Lee, et al. J Biol Chem 2000 275 30907 30915 10.1074/jbc.M002752200 10906123
42. Periostin is down-regulated in high grade human bladder cancers and suppresses in vitro cell invasiveness and in vivo metastasis of cancer cells. CJ Kim N Yoshioka Y Tambe, et al. Int J Cancer 2005 117 51 58 10.1002/ijc.21120 15880581
43. Nuclear targeting sequences - a consensus? C Dingwall RA Laskey, Trends Biochem Sci 1991 16 478 481 10.1016/0968-0004(91)90184-W 1664152
44. Integrins: bidirectional, allosteric signaling machines. RO Hynes, Cell 2002 110 673 687 10.1016/S0092-8674(02)00971-6 12297042
45. Conformational resemblance between the structures of integrin-activating pentapetides derived from betaig-h3 and RGD peptide analogues in a membrane environment. SJ Park S Park H Ahn I Kim B Lee, Peptides 2004 25 199 205 10.1016/j.peptides.2003.12.002 15063001
46. The molecular genetics of the corneal dystrophies - current status. GK Klintworth, Front Biosci 2003 8 687 713 10.2741/1018 12700042
47. Extracellular matrix protein betaig-h3/TGFBI promotes metastasis of colon cancer by enhancing cell extravasation. C Ma Y Rong DR Radiloff, et al. Genes Dev 2008 22 308 321 10.1101/gad.1632008 18245446
48. BigH3 protein expression as a marker for breast cancer. GM Calaf C Echibur-Chau YL Zhao TK Hei, Int J Mol Med 2008 21 561 568 18425347
49. TGFBI deficiency predisposes mice to spontaneous tumor development. Y Zhang G Wen G Shao, et al. Cancer Res 2009 69 37 44 10.1158/0008-5472.CAN-08- 1648 19117985
50. Detection of betaig-H3, a TGFbeta induced gene, during cardiac development and its complementary pattern with periostin. RA Norris CB Kern A Wessels, et al. Anat Embryol 2005 210 13 23 10.1007/s00429-005-0010-z 16034610
51. Role of alternative splicing of periostin in human bladder carcinogenesis. CJ Kim T Isono Y Tambe, et al. Int J Oncol 2008 32 161 169 18097555
52. Periostin-like-factor and Periostin in an animal model of work-related musculoskeletal disorder. S Rani MF Barbe AE Barr J Litvin, Bone 2009 44 502 512 10.1016/j.bone.2008.11.012 19095091
53. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. SF Altschul TL Madden AA Schäffer, et al. Nucleic Acids Res 1997 25 3389 3402 10.1093/nar/25.17.3389 9254694
54. Clustal W and Clustal X version 2.0. MA Larkin G Blackshields NP Brown, et al. Bioinformatics 2007 23 2947 2948 10.1093/bioinformatics/btm404 17846036
55. Profile hidden Markov models. SR Eddy, Bioinformatics 1998 14 755 763 10.1093/bioinformatics/14.9.755 9918945
56. The human genome browser at UCSC. WJ Kent CW Sugnet TS Furey, et al. Genome Res 2002 12 996 1006 12045153
57. The UCSC Genome Browser Database: 2008 update. D Karolchik RM Kuhn R Baertsch, et al. Nucleic Acids Res 2008 36 773 779 10.1093/nar/gkm966 18086701
58. BLAT - the BLAST-like alignment tool. WJ Kent, Genome Res 2002 12 656 664 11932250
59. Aligning multiple genomic sequences with the threaded blockset aligner. M Blanchette WJ Kent C Riemer, et al. Genome Res 2004 14 708 715 10.1101/gr.1933104 15060014
60. Ensembl 2009. TJP Hubbard BL Aken S Ayling, et al. Nucleic Acids Res 2009 37 690 697 10.1093/nar/gkn828 19033362
61. Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes. AV Alekseyenko N Kim CJ Lee, RNA 2007 13 661 670 10.1261/rna.325107 17369312
62. WWW-query: an on-line retrieval system for biological sequence banks. G Perrière M Gouy, Biochimie 1996 78 364 369 10.1016/0300-9084(96)84768-7 8905155
63. VISTA: computational tools for comparative genomics. KA Frazer L Pachter A Poliakov EM Rubin I Dubchak, Nucleic Acids Res 2004 32 273 279 10.1093/nar/gkh458 15215394
64. Glocal alignment: finding rearrangements during alignment. M Brudno S Malde A Poliakov, et al. Bioinformatics 2003 19 Suppl 1 54 62 10.1093/bioinformatics/btg1005 12855437
65. WebLogo: a sequence logo generator. GE Crooks G Hon J Chandonia SE Brenner, Genome Res 2004 14 1188 1190 10.1101/gr.849004 15173120
66. JDotter: a Java interface to multiple dotplots generated by dotter. R Brodie RL Roper C Upton, Bioinformatics 2004 20 279 281 10.1093/bioinformatics/ btg406 14734323
67. Protein secondary structure prediction based on position-specific scoring matrices. DT Jones, J Mol Biol 1999 292 195 202 10.1006/jmbi.1999.3091 10493868
68. Protein structure prediction servers at University College London. K Bryson LJ McGuffin RL Marsden, et al. Nucleic Acids Res 2005 33 36 38 10.1093/nar/gki410 15980489
69. Prediction of complete gene structures in human genomic DNA. C Burge S Karlin, J Mol Biol 1997 268 78 94 10.1006/jmbi.1997.0951 9149143
70. Genome duplication, a trait shared by 22000 species of ray-finned fish. JS Taylor I Braasch T Frickey A Meyer Y Van de Peer, Genome Res 2003 13 382 390 10.1101/gr.640303 12618368
71. Expression and function of periostin-isoforms in bone. J Litvin A Selim MO Montgomery, et al. J Cell Biochem 2004 92 1044 1061 10.1002/jcb.20115 15258926
72. Suppression of anchorage-independent growth of human cancer cell lines by the TRIF52/periostin/OSF-2 gene. N Yoshioka S Fuji M Shimakage, et al. Exp Cell Res 2002 279 91 99 10.1006/excr.2002.5590 12213217
73. Periostin induces proliferation of differentiated cardiomyocytes and promotes cardiac repair. B Kühn F del Monte RJ Hajjar, et al. Nat Med 2007 13 962 969 10.1038/nm1619 17632525
74. Genetic manipulation of periostin expression in the heart does not affect myocyte content, cell cycle activity, or cardiac repair. A Lorts JA Schwanekamp JW Elrod MA Sargent JD Molkentin, Circ Res 2009 104 1 7 10.1161/CIRCRESAHA.108. 188649 19038863
75. Acquired expression of periostin by human breast cancers promotes tumor angiogenesis through up-regulation of vascular endothelial growth factor receptor 2 expression. R Shao S Bao X Bai, et al. Mol Cell Biol 2004 24 3992 4003 10.1128/MCB.24.9.3992-4003.2004 15082792
76. A chemical proteomics approach for the identification of accessible antigens expressed in human kidney cancer. V Castronovo D Waltregny P Kischel, et al. Mol Cell Proteomics 2006 5 2083 2091 10.1074/mcp.M600164-MCP200 16861259
77. Immunolocalization of Periostin-like factor and Periostin during embryogenesis. S Zhu MF Barbe N Amin, et al. J Histochem Cytochem 2008 56 329 345 10.1369/jhc.7A7321.2007 18040074
78. Evolution by Gene Duplication. S Ohno, Berlin: Springer-Verlag 1970
79. Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons. XH Zhang LA Chasin, Proc Natl Acad Sci USA 2006 103 13427 13432 10.1073/pnas.0603042103 16938881
80. Molecular modeling of protein-glycosaminoglycan interactions. AD Cardin HJ Weintraub, Arteriosclerosis 1989 9 21 32 2463827
81. Identification and structural analysis of type I collagen sites in complex with fibronectin fragments. MC Erat DA Slatter ED Lowe, et al. Proc Natl Acad Sci USA 2009 106 4195 4200 10.1073/pnas.0812516106 19251642
82. Pathogenic bacteria attach to human fibronectin through a tandem beta-zipper. U Schwarz-Linek JM Werner AR Pickford, et al. Nature 2003 423 177 181 10.1038/nature01589 12736686
83. Crystal structures of fibronectin-binding sites from Staphylococcus aureus FnBPA in complex with fibronectin domains. RJ Bingham E Rudĩo-Pĩera NAG Meenan, et al. Proc Natl Acad Sci USA 2008 105 12254 12258 10.1073/pnas.0803556105 18713862
84. The UCSC Proteome Browser. F Hsu TH Pringle RM Kuhn, et al. Nucleic Acids Res 2005 33 454 458 10.1093/nar/gki100 15608236
85. Database resources of the National Center for Biotechnology Information. EW Sayers T Barrett DA Benson, et al. Nucleic Acids Res 2009 37 5 15 10.1093/nar/gkn741 18940862