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Volumn 36, Issue 2, 2010, Pages 166-174

Docking and molecular dynamics studies on the interaction of four imidazoline derivatives with potassium ion channel (Kir6.2)

Author keywords

AutoDock; Gromacs; Imidazoline; KATP; Molecular dynamics

Indexed keywords

ANTIDIABETIC DRUG; AUTODOCK; BILAYER MEMBRANES; BINDING POCKETS; DOCKING SITES; EXPLICIT WATER; GROMACS; HYDROPHOBIC POCKETS; IMIDAZOLINE DERIVATIVES; IMIDAZOLINES; INTERACTION MODES; KEY COMPONENT; LIPID BILAYER MEMBRANES; MOLECULAR DYNAMICS SIMULATIONS; NONPOLAR INTERACTIONS; PHOSPHATIDYL CHOLINE; POTASSIUM CHANNELS; POTASSIUM ION CHANNELS;

EID: 77049110569     PISSN: 08927022     EISSN: 10290435     Source Type: Journal    
DOI: 10.1080/08927020903141035     Document Type: Article
Times cited : (7)

References (33)
  • 2
    • 33645322386 scopus 로고    scopus 로고
    • KATP channels as molecular sensors of cellular metabolism
    • C.G. Nichols, KATP channels as molecular sensors of cellular metabolism, Nature 440 (2006), pp. 470-476.
    • (2006) Nature , vol.440 , pp. 470-476
    • Nichols, C.G.1
  • 6
    • 0037184996 scopus 로고    scopus 로고
    • Structural basis of inward rectification: Cytoplasmic pore of the G protein-gated inward rectifier GIRK1 at 1.8 A ° resolution
    • M. Nishida and R. Mackinnon, Structural basis of inward rectification: cytoplasmic pore of the G protein-gated inward rectifier GIRK1 at 1.8 A ° resolution, Cell 111 (2002), pp. 957-965.
    • (2002) Cell , vol.111 , pp. 957-965
    • Nishida, M.1    MacKinnon, R.2
  • 7
    • 13444274375 scopus 로고    scopus 로고
    • Functional analysis of a structural model of the ATP-binding site of the KATP channel Kir6.2 subunit
    • J.F. Antcliff, S. Haider, P. Proks, M.S.P. Sansom, and F.M. Ashcroft, Functional analysis of a structural model of the ATP-binding site of the KATP channel Kir6.2 subunit, EMBO J. 24 (2005), pp. 229-239.
    • (2005) EMBO J. , vol.24 , pp. 229-239
    • Antcliff, J.F.1    Haider, S.2    Proks, P.3    Sansom, M.S.P.4    Ashcroft, F.M.5
  • 8
    • 0038714391 scopus 로고    scopus 로고
    • Identification of residues contributing to the ATP-binding site of Kir6.2
    • S. Trapp, S. Haider, P. Jones, M.S.P. Sansom, and F.M. Ashcroft, Identification of residues contributing to the ATP-binding site of Kir6.2, EMBO J. 22 (2003), pp. 2903-2912.
    • (2003) EMBO J. , vol.22 , pp. 2903-2912
    • Trapp, S.1    Haider, S.2    Jones, P.3    Sansom, M.S.P.4    Ashcroft, F.M.5
  • 9
    • 33845201305 scopus 로고    scopus 로고
    • Antagonism of the insulinotropic action of first generation imidazolines by openers of KATP channels
    • A. Wienbergen, C. Bleck, T.G. Lackmann, and I. Rustenbeck, Antagonism of the insulinotropic action of first generation imidazolines by openers of KATP channels, Biochem. Pharmacol. 73 (2007), pp. 94-102.
    • (2007) Biochem. Pharmacol. , vol.73 , pp. 94-102
    • Wienbergen, A.1    Bleck, C.2    Lackmann, T.G.3    Rustenbeck, I.4
  • 10
    • 34547658090 scopus 로고    scopus 로고
    • Sulfonylurea and glinide reduce insulin content, functional expression of KATP channels, and accelerate apoptotic b-cell death in the chronic phase
    • A. Takahashi, K. Nagashima, A. Hamasaki, N. Kuwamura, Y. Kawasaki, H. Ikeda, Y. Yamada, N. Inagaki, and Y. Seino, Sulfonylurea and glinide reduce insulin content, functional expression of KATP channels, and accelerate apoptotic b-cell death in the chronic phase, Diabetes Res. Clin. Pract. 77 (2007), pp. 343-350.
    • (2007) Diabetes Res. Clin. Pract. , vol.77 , pp. 343-350
    • Takahashi, A.1    Nagashima, K.2    Hamasaki, A.3    Kuwamura, N.4    Kawasaki, Y.5    Ikeda, H.6    Yamada, Y.7    Inagaki, N.8    Seino, Y.9
  • 11
    • 0030921569 scopus 로고    scopus 로고
    • Imidazoline/guanidinium binding sites and their relation to inhibition of KATP channels in pancreatic B-cells Naunyn- Schmiedeberg's
    • I. Rustenbeck, C. Herrmann, P. Ratzka, and A. Hasselblatt, Imidazoline/guanidinium binding sites and their relation to inhibition of KATP channels in pancreatic B-cells, Naunyn- Schmiedeberg's Arch. Pharmacol. 356 (1997), pp. 410-417.
    • (1997) Arch. Pharmacol. , vol.356 , pp. 410-417
    • Rustenbeck, I.1    Herrmann, C.2    Ratzka, P.3    Hasselblatt, A.4
  • 12
    • 0030611227 scopus 로고    scopus 로고
    • Phentolamine block of KATP channels is mediated by Kir6.2
    • P. Proks and F.M. Ashcroft, Phentolamine block of KATP channels is mediated by Kir6.2, Proc. Natl Acad. Sci. 94 (1997), pp. 11716-11720.
    • (1997) Proc. Natl Acad. Sci. , vol.94 , pp. 11716-11720
    • Proks, P.1    Ashcroft, F.M.2
  • 14
    • 34548097260 scopus 로고    scopus 로고
    • Identification of the PIP2-binding site on Kir6.2 by molecular modelling and functional analysis
    • S. Haider, A.I. Tarasov, T.J. Craig, M.S.P. Sansom, and F.M. Ashcroft, Identification of the PIP2-binding site on Kir6.2 by molecular modelling and functional analysis, EMBO J. 26 (2007), pp. 3749-3759.
    • (2007) EMBO J. , vol.26 , pp. 3749-3759
    • Haider, S.1    Tarasov, A.I.2    Craig, T.J.3    Sansom, M.S.P.4    Ashcroft, F.M.5
  • 15
    • 33748534489 scopus 로고    scopus 로고
    • Study on the hydrolysis mechanism of phosphodiesterase 4 using molecular dynamics simulations
    • N.S. Kang, C.H. Chae, and S.-E. Yoo, Study on the hydrolysis mechanism of phosphodiesterase 4 using molecular dynamics simulations, Mol. Simul. 32 (2006), pp. 369-374.
    • (2006) Mol. Simul. , vol.32 , pp. 369-374
    • Kang, N.S.1    Chae, C.H.2    Yoo, S.-E.3
  • 16
    • 45849124627 scopus 로고    scopus 로고
    • Refinement of comparative models of protein structure by using multicanonical molecular dynamic simulation
    • I. Ryuichiro, T. Tohru, and S. Kentaro, Refinement of comparative models of protein structure by using multicanonical molecular dynamic simulation, Mol. Simul. 34 (2008), pp. 327-336.
    • (2008) Mol. Simul. , vol.34 , pp. 327-336
    • Ryuichiro, I.1    Tohru, T.2    Kentaro, S.3
  • 17
    • 0347039336 scopus 로고    scopus 로고
    • Molecular dynamic simulation of model lipid membranes: Structural effects of impurities
    • Y. Mine, Molecular dynamic simulation of model lipid membranes: structural effects of impurities,Mol. Simul. 27 (2001), pp. 187-197.
    • (2001) Mol. Simul. , vol.27 , pp. 187-197
    • Mine, Y.1
  • 18
    • 45849101724 scopus 로고    scopus 로고
    • Interaction between a twelve-residue segment of antifreeze protein type I, or its mutants, and water molecules
    • N. Takashi, T. Hiromi, and H. Yoshimichi, Interaction between a twelve-residue segment of antifreeze protein type I, or its mutants, and water molecules, Mol. Simul. 34 (2008), pp. 309-325.
    • (2008) Mol. Simul. , vol.34 , pp. 309-325
    • Takashi, N.1    Hiromi, T.2    Yoshimichi, H.3
  • 20
  • 21
    • 0033397980 scopus 로고    scopus 로고
    • Python: A programming language for software integration and development
    • M.F. Sanner, Python: A programming language for software integration and development, J. Mol. Graph. Model 17 (1999), pp. 57-61.
    • (1999) J. Mol. Graph. Model , vol.17 , pp. 57-61
    • Sanner, M.F.1
  • 22
    • 0035789518 scopus 로고    scopus 로고
    • GROMACS 3.0: A package for molecular stimulation and trajectory analysis
    • E. Lindahl, B. Hess, and D. Van Der Spoel, GROMACS 3.0: a package for molecular stimulation and trajectory analysis, J. Mol. Model 7 (2001), pp. 306-317.
    • (2001) J. Mol. Model , vol.7 , pp. 306-317
    • Lindahl, E.1    Hess, B.2    Spoel Der D.Van3
  • 23
    • 7544226311 scopus 로고    scopus 로고
    • PRODRG - A tool for high-throughput crystallography of protein-ligand complexes
    • A.W. Schuettelkopf and D.M.F. Van Aalten, PRODRG - a tool for high-throughput crystallography of protein-ligand complexes, Acta. Cryst. D 60 (2004), pp. 1355-1363.
    • (2004) Acta. Cryst. D , vol.60 , pp. 1355-1363
    • Schuettelkopf, A.W.1    Aalten Van, F.D.M.2
  • 24
    • 33846823909 scopus 로고
    • Particle mesh Ewald-an N.log(N) method for Ewald sums in large systems
    • T. Darden, D. York, and L.J. Pedersen, Particle mesh Ewald-an N.log(N) method for Ewald sums in large systems, J. Chem. Phys. 98 (1993), pp. 10089-10092.
    • (1993) J. Chem. Phys. , vol.98 , pp. 10089-10092
    • Darden, T.1    York, D.2    Pedersen, L.J.3
  • 27
    • 0038147368 scopus 로고    scopus 로고
    • Effects of the imidazoline binding site ligands, idazoxan and efaroxan, on the viability of insulin-secreting BRIN-BD11 cells
    • H. Gao, M. Mourtada, and N.G. Morgan, Effects of the imidazoline binding site ligands, idazoxan and efaroxan, on the viability of insulin-secreting BRIN-BD11 cells, J. Pancreas 4 (2003), pp. 117-124.
    • (2003) J. Pancreas , vol.4 , pp. 117-124
    • Gao, H.1    Mourtada, M.2    Morgan, N.G.3
  • 28
    • 0032486149 scopus 로고    scopus 로고
    • Effector systems involved in the insulin secretory responses to efaroxan and RX871024 in rat islets of Langerhans
    • M. Mourtada, S.A. Smith, and N.G. Morgan, Effector systems involved in the insulin secretory responses to efaroxan and RX871024 in rat islets of Langerhans, Eur. J. Pharmacol. 350 (1998), pp. 251-258.
    • (1998) Eur. J. Pharmacol. , vol.350 , pp. 251-258
    • Mourtada, M.1    Smith, S.A.2    Morgan, N.G.3
  • 29
    • 0032772785 scopus 로고    scopus 로고
    • Multiple effector pathways regulate the insulin secretory response to the imidazoline RX871024 in isolated rat pancreatic islets
    • M. Mourtada, S.L.F. Chan, S.A. Smith, and N.G. Morga, Multiple effector pathways regulate the insulin secretory response to the imidazoline RX871024 in isolated rat pancreatic islets, Br. J. Pharmacol. 127 (1999), pp. 1279-1287.
    • (1999) Br. J. Pharmacol. , vol.127 , pp. 1279-1287
    • Mourtada, M.1    Chan, S.L.F.2    Smith, S.A.3    Morga, N.G.4
  • 30
    • 0035086032 scopus 로고    scopus 로고
    • The novel imidazoline compound BL11282 potentiates glucose-induced insulin secretion in pancreatic b-cells in the absence of modulation of KATP channel activity
    • A.M. Efanov, S.V. Zaitsev, M. Hans-Juergen, A. Raap, I.B. Appelskog, O. Larsson, B. Per-Olof, and S. Efendic, The novel imidazoline compound BL11282 potentiates glucose-induced insulin secretion in pancreatic b-cells in the absence of modulation of KATP channel activity, Diabetes 50 (2001), pp. 797-802.
    • (2001) Diabetes , vol.50 , pp. 797-802
    • Efanov, A.M.1    Zaitsev, S.V.2    Hans-Juergen, M.3    Raap, A.4    Appelskog, I.B.5    Larsson, O.6    Per-Olof, B.7    Efendic, S.8
  • 33
    • 42449134021 scopus 로고    scopus 로고
    • The imidazoline RX871024 induces death of proliferating insulin-secreting cells by activation of c-jun N-terminal kinase
    • I.I. Zaitseva, J. Størling, T. Mandrup-Poulsen, P.O. Berggren, and S.V. Zaitsev, The imidazoline RX871024 induces death of proliferating insulin-secreting cells by activation of c-jun N-terminal kinase, Cell. Mol. Life Sci. 65 (2008), pp. 1248-1255.
    • (2008) Cell. Mol. Life Sci. , vol.65 , pp. 1248-1255
    • Zaitseva, I.I.1    Størling, J.2    Mandrup-Poulsen, T.3    Berggren, P.O.4    Zaitsev, S.V.5


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