메뉴 건너뛰기




Volumn 23, Issue 12, 2009, Pages 869-881

Comparative virtual screening and novelty detection for NMDA-Glycine B antagonists

Author keywords

Bayesian classifier; Docking; Drug discovery; Machine learning; Molecular shape; N Methyl d Aspartate receptor; Novelty detection; Pharmacophore; Structure activity relationship

Indexed keywords

ARTIFICIAL INTELLIGENCE; BINDING SITES; CHEMICAL DETECTION; COMPUTATIONAL CHEMISTRY; COMPUTATIONAL METHODS; LEARNING SYSTEMS; MOLECULAR GRAPHICS; PHARMACODYNAMICS; SCAFFOLDS;

EID: 76449114766     PISSN: 0920654X     EISSN: 15734951     Source Type: Journal    
DOI: 10.1007/s10822-009-9304-1     Document Type: Article
Times cited : (29)

References (69)
  • 1
    • 0019401318 scopus 로고
    • Excitatory amino acid transmitters
    • 10.1146/annurev.pa.21.040181.001121 1:CAS:528:DyaL3MXitVarsbo%3D
    • JC Watkins RH Evans 1981 Excitatory amino acid transmitters Annu Rev Pharmacol Toxicol 21 1 165 204 10.1146/annurev.pa.21.040181.001121 1:CAS:528:DyaL3MXitVarsbo%3D
    • (1981) Annu Rev Pharmacol Toxicol , vol.21 , Issue.1 , pp. 165-204
    • Watkins, J.C.1    Evans, R.H.2
  • 2
    • 0021260967 scopus 로고
    • Magnesium gates glutamate-activated channels in mouse central neurones
    • 10.1038/307462a0 1:CAS:528:DyaL2cXhtVSktrg%3D
    • L Nowak P Bregestovski P Ascher A Herbet A Prochiantz 1984 Magnesium gates glutamate-activated channels in mouse central neurones Nature 307 5950 462 465 10.1038/307462a0 1:CAS:528:DyaL2cXhtVSktrg%3D
    • (1984) Nature , vol.307 , Issue.5950 , pp. 462-465
    • Nowak, L.1    Bregestovski, P.2    Ascher, P.3    Herbet, A.4    Prochiantz, A.5
  • 3
    • 0023157215 scopus 로고
    • Multiple-conductance channels activated by excitatory amino acids in cerebellar neurons
    • DOI 10.1038/325525a0
    • SG Cull-Candy MM Usowicz 1987 Multiple-conductance channels activated by excitatory amino acids in cerebellar neurons Nature 325 6104 525 528 10.1038/325525a0 1:CAS:528:DyaL2sXhtFCju7Y%3D (Pubitemid 17056732)
    • (1987) Nature , vol.325 , Issue.6104 , pp. 525-528
    • Cull-Candy, S.G.1    Usowicz, M.M.2
  • 4
    • 0023145892 scopus 로고
    • Glutamate activates multiple single channel conductances in hippocampal neurons
    • DOI 10.1038/325522a0
    • CE Jahr CF Stevens 1987 Glutamate activates multiple single channel conductances in hippocampal neurons Nature 325 6104 522 525 10.1038/325522a0 1:CAS:528:DyaL2sXhtlaiurk%3D (Pubitemid 17056731)
    • (1987) Nature , vol.325 , Issue.6104 , pp. 522-525
    • Jahr, C.E.1    Stevens, C.F.2
  • 5
    • 0026419327 scopus 로고
    • Molecular cloning and characterization of the rat NMDA receptor
    • K Moriyoshi M Masu T Ishii R Shigemoto N Mizuno S Nakanishi 1991 Molecular cloning and characterization of the rat NMDA receptor Nature 354 6348 31 37 10.1038/354031a0 1:CAS:528:DyaK3sXhs1Cjuw%3D%3D (Pubitemid 21896774)
    • (1991) Nature , vol.354 , Issue.6348 , pp. 31-37
    • Moriyoshi, K.1    Masu, M.2    Ishii, T.3    Shigemoto, R.4    Mizuno, N.5    Nakanishi, S.6
  • 6
    • 0026005169 scopus 로고
    • N-methyl-D-aspartate antagonists in the treatment of Parkinson's disease
    • 1:STN:280:DyaK38%2FmtFKntg%3D%3D
    • JT Greenamyre CF O'Brien 1991 N-methyl-D-aspartate antagonists in the treatment of Parkinson's disease Arch Neurol 48 9 977 981 1:STN:280: DyaK38%2FmtFKntg%3D%3D
    • (1991) Arch Neurol , vol.48 , Issue.9 , pp. 977-981
    • Greenamyre, J.T.1    O'Brien, C.F.2
  • 7
    • 0023000880 scopus 로고
    • Density and distribution of NMDA receptors in the human hippocampus in Alzheimer's disease
    • DOI 10.1016/0006-8993(86)90611-6
    • JW Geddes H Chang-Chui SM Cooper IT Lott CW Cotman 1986 Density and distribution of NMDA receptors in the human hippocampus in Alzheimer's disease Brain Res 399 1 156 161 10.1016/0006-8993(86)90611-6 1:CAS:528: DyaL2sXkvVWgtg%3D%3D (Pubitemid 17198964)
    • (1986) Brain Research , vol.399 , Issue.1 , pp. 156-161
    • Geddes, J.W.1    Chang-Chui, H.2    Cooper, S.M.3
  • 8
    • 0141707078 scopus 로고    scopus 로고
    • The NMDA receptor antagonist memantine as a symptomatological and neuroprotective treatment for Alzheimer's disease: Preclinical evidence
    • DOI 10.1002/gps.938
    • W Danysz C Parsons 2003 The NMDA receptor antagonist memantine as a symptomatological and neuroprotective treatment for Alzheimer's disease: preclinical evidence Int J Geriatr Psychiatry 18 S1 S23 S32 10.1002/gps.938 (Pubitemid 37150475)
    • (2003) International Journal of Geriatric Psychiatry , vol.18 , Issue.SUPPL. 1
    • Danysz, W.1    Parsons, C.G.2
  • 9
    • 0032694066 scopus 로고    scopus 로고
    • NMDA receptor hypofunction model of schizophrenia
    • 10.1016/S0022-3956(99)00029-1 1:STN:280:DC%2BD3c%2Fpt1Wisg%3D%3D
    • J Olney 1999 NMDA receptor hypofunction model of schizophrenia J Psychiatr Res 33 6 523 533 10.1016/S0022-3956(99)00029-1 1:STN:280: DC%2BD3c%2Fpt1Wisg%3D%3D
    • (1999) J Psychiatr Res , vol.33 , Issue.6 , pp. 523-533
    • Olney, J.1
  • 10
    • 0032523002 scopus 로고    scopus 로고
    • Evidence for a tetrameric structure of recombinant NMDA receptors
    • 1:CAS:528:DyaK1cXis1ejtLY%3D
    • B Laube J Kuhse H Betz 1998 Evidence for a tetrameric structure of recombinant NMDA receptors J Neurosci 18 8 2954 2961 1:CAS:528: DyaK1cXis1ejtLY%3D
    • (1998) J Neurosci , vol.18 , Issue.8 , pp. 2954-2961
    • Laube, B.1    Kuhse, J.2    Betz, H.3
  • 11
    • 27744500994 scopus 로고    scopus 로고
    • Subunit arrangement and function in NMDA receptors
    • 10.1038/nature04089
    • H Furukawa S Singh R Mancusso E Gouaux 2003 Subunit arrangement and function in NMDA receptors Nature 438 7065 185 192 10.1038/nature04089
    • (2003) Nature , vol.438 , Issue.7065 , pp. 185-192
    • Furukawa, H.1    Singh, S.2    Mancusso, R.3    Gouaux, E.4
  • 12
    • 0023754192 scopus 로고
    • Requirement for glycine in activation of NMDA-receptors expressed in Xenopus oocytes
    • 10.1126/science.2841759 1:CAS:528:DyaL1cXlt1aqurc%3D
    • NW Kleckner R Dingledine 1988 Requirement for glycine in activation of NMDA-receptors expressed in Xenopus oocytes Science 241 4867 835 837 10.1126/science.2841759 1:CAS:528:DyaL1cXlt1aqurc%3D
    • (1988) Science , vol.241 , Issue.4867 , pp. 835-837
    • Kleckner, N.W.1    Dingledine, R.2
  • 13
    • 0030991790 scopus 로고    scopus 로고
    • Molecular determinants of agonist discrimination by NMDA receptor subunits: Analysis of the glutamate binding site on the NR2B subunit
    • DOI 10.1016/S0896-6273(00)81249-0
    • B Laube H Hirai M Sturgess H Betz J Kuhse 1997 Molecular determinants of agonist discrimination by NMDA receptor subunits: analysis of the glutamate binding site on the NR2B subunit Neuron 18 3 493 503 10.1016/S0896-6273(00) 81249-0 1:CAS:528:DyaK2sXit1yntro%3D (Pubitemid 27138796)
    • (1997) Neuron , vol.18 , Issue.3 , pp. 493-503
    • Laube, B.1    Hirai, H.2    Sturgess, M.3    Betz, H.4    Kuhse, J.5
  • 14
    • 0031593882 scopus 로고    scopus 로고
    • Glycine(B) recognition site of NMDA receptors and its antagonists
    • DOI 10.1007/BF01345263
    • W Danysz CG Parsons 1998 GlycineB recognition site of NMDA receptors and its antagonists Amino Acids 14 1-3 205 206 10.1007/BF01345263 1:STN:280:DyaK1M%2FovVKhug%3D%3D (Pubitemid 28051172)
    • (1998) Amino Acids , vol.14 , Issue.1-3 , pp. 205-206
    • Danysz, W.1    Parsons, C.G.2
  • 15
    • 0021743001 scopus 로고
    • Blockade of N-methyl-D-aspartate receptors may protect against ischemic damage in the brain
    • 10.1126/science.6093256 1:CAS:528:DyaL2MXjsl0%3D
    • RP Simon JH Swan T Griffiths BS Meldrum 1984 Blockade of N-methyl-D-aspartate receptors may protect against ischemic damage in the brain Science 226 4676 850 852 10.1126/science.6093256 1:CAS:528:DyaL2MXjsl0%3D
    • (1984) Science , vol.226 , Issue.4676 , pp. 850-852
    • Simon, R.P.1    Swan, J.H.2    Griffiths, T.3    Meldrum, B.S.4
  • 16
    • 0035840856 scopus 로고    scopus 로고
    • NMDA receptors as targets for drug action in neuropathic pain
    • DOI 10.1016/S0014-2999(01)01307-3, PII S0014299901013073
    • C Parsons 2001 NMDA receptors as targets for drug action in neuropathic pain Eur J Pharmacol 429 1-3 71 78 10.1016/S0014-2999(01)01307-3 1:CAS:528:DC%2BD3MXotFWisL8%3D (Pubitemid 33043983)
    • (2001) European Journal of Pharmacology , vol.429 , Issue.1-3 , pp. 71-78
    • Parsons, C.G.1
  • 17
    • 0036955427 scopus 로고    scopus 로고
    • Current trends in lead discovery: Are we looking for the appropriate properties?
    • DOI 10.1023/A:1021368007777
    • TI Oprea 2000 Current trends in lead discovery: are we looking for the appropriate properties? Mol Divers 5 4 199 208 10.1023/A:1021368007777 1:CAS:528:DC%2BD38XptFOjurg%3D (Pubitemid 36082830)
    • (2000) Molecular Diversity , vol.5 , Issue.4 , pp. 199-208
    • Oprea, T.I.1
  • 18
    • 0033523672 scopus 로고    scopus 로고
    • 'Scaffold-hopping' by topological pharmacophore search: A contribution to virtual screening
    • DOI 10.1002/(SICI)1521-3773(19991004)38:19<2894::AID-ANIE2894>3.0. CO;2-F
    • G Schneider W Neidhart T Giller G Schmid 1999 "Scaffold- hopping" by topological pharmacophore search: a contribution to virtual screening Angew Chem Int Ed 38 19 2894 2896 10.1002/(SICI)1521-3773(19991004)38: 19<2894::AID-ANIE2894>3.0.CO;2-F 1:CAS:528:DyaK1MXmslKht78%3D (Pubitemid 29479958)
    • (1999) Angewandte Chemie - International Edition , vol.38 , Issue.19 , pp. 2894-2896
    • Schneider, G.1    Neidhart, W.2    Giller, T.3    Schmid, G.4
  • 19
    • 33846013232 scopus 로고    scopus 로고
    • Scaffold-hopping: How far can you jump?
    • DOI 10.1002/qsar.200610091
    • G Schneider P Schneider S Renner 2006 Scaffold-hopping: how far can you jump? QSAR Comb Sci 25 12 1162 1171 10.1002/qsar.200610091 1:CAS:528: DC%2BD2sXmsFCjtg%3D%3D (Pubitemid 46052453)
    • (2006) QSAR and Combinatorial Science , vol.25 , Issue.12 , pp. 1162-1171
    • Schneider, G.1    Schneider, P.2    Renner, S.3
  • 20
    • 11144320699 scopus 로고    scopus 로고
    • Navigating chemical space for biology and medicine
    • DOI 10.1038/nature03193
    • C Lipinski A Hopkins 2004 Navigating chemical space for biology and medicine Nature 432 7019 855 861 10.1038/nature03193 1:CAS:528: DC%2BD2cXhtVOht7jO (Pubitemid 40037141)
    • (2004) Nature , vol.432 , Issue.7019 , pp. 855-861
    • Lipinski, C.1    Hopkins, A.2
  • 21
    • 11144341956 scopus 로고    scopus 로고
    • Chemical space and biology
    • DOI 10.1038/nature03192
    • C Dobson 2004 Chemical space and biology Nature 432 7019 824 828 10.1038/nature03192 1:CAS:528:DC%2BD2cXhtVOht7jN (Pubitemid 40037137)
    • (2004) Nature , vol.432 , Issue.7019 , pp. 824-828
    • Dobson, C.M.1
  • 22
    • 0033863669 scopus 로고    scopus 로고
    • High-throughput screening: New technology for the 21st century
    • DOI 10.1016/S1367-5931(00)00110-1
    • RP Hertzberg AJ Pope 2000 High-throughput screening: new technology for the 21st century Curr Opin Chem Biol 4 4 445 451 10.1016/S1367-5931(00)00110-1 1:CAS:528:DC%2BD3cXlvVCisbk%3D (Pubitemid 30621048)
    • (2000) Current Opinion in Chemical Biology , vol.4 , Issue.4 , pp. 445-451
    • Hertzberg, R.P.1    Pope, A.J.2
  • 23
    • 0032087370 scopus 로고    scopus 로고
    • New assay technologies for high-throughput screening
    • 10.1016/S1367-5931(98)80015-X 1:CAS:528:DyaK1cXktlKmtb8%3D
    • L Silverman 1998 New assay technologies for high-throughput screening Curr Opin Chem Biol 2 3 397 403 10.1016/S1367-5931(98)80015-X 1:CAS:528:DyaK1cXktlKmtb8%3D
    • (1998) Curr Opin Chem Biol , vol.2 , Issue.3 , pp. 397-403
    • Silverman, L.1
  • 24
    • 12844283957 scopus 로고    scopus 로고
    • High-throughput drug discovery: What can we expect from HTS?
    • DOI 10.1016/S1359-6446(04)03275-1, PII S1359644604032751
    • P Gribbon A Sewing 2005 High-throughput drug discovery: what can we expect from HTS? Drug Discovery Today 10 1 17 22 10.1016/S1359-6446(04)03275-1 (Pubitemid 40164815)
    • (2005) Drug Discovery Today , vol.10 , Issue.1 , pp. 17-22
    • Gribbon, P.1    Andreas, S.2
  • 25
    • 0036420691 scopus 로고    scopus 로고
    • Trends in virtual combinatorial library design
    • 1:CAS:528:DC%2BD38XoslKiurw%3D
    • G Schneider 2002 Trends in virtual combinatorial library design Curr Med Chem 9 23 2095 2101 1:CAS:528:DC%2BD38XoslKiurw%3D
    • (2002) Curr Med Chem , vol.9 , Issue.23 , pp. 2095-2101
    • Schneider, G.1
  • 26
    • 0034256065 scopus 로고    scopus 로고
    • The in silico world of virtual libraries
    • DOI 10.1016/S1359-6446(00)01516-6, PII S1359644600015166
    • A Leach 2000 The in silico world of virtual libraries Drug Discovery Today 5 8 326 336 10.1016/S1359-6446(00)01516-6 1:CAS:528:DC%2BD3cXltVOgs7g%3D (Pubitemid 30453863)
    • (2000) Drug Discovery Today , vol.5 , Issue.8 , pp. 326-336
    • Leach, A.R.1    Hann, M.M.2
  • 27
    • 0031831627 scopus 로고    scopus 로고
    • Approaches to virtual library design
    • DOI 10.1016/S1359-6446(98)01186-6
    • J Van Drie 1998 Approaches to virtual library design Drug Discovery Today 3 6 274 283 10.1016/S1359-6446(98)01186-6 (Pubitemid 28255332)
    • (1998) Drug Discovery Today , vol.3 , Issue.6 , pp. 274-283
    • Van Drie, J.H.1    Lajiness, M.S.2
  • 28
    • 0037235881 scopus 로고    scopus 로고
    • Virtual screening to enrich hit lists from high-throughput screening: A case study on small-molecule inhibitors of angiogenin
    • 10.1002/prot.10270 1:CAS:528:DC%2BD3sXlsVKlsw%3D%3D
    • JL Jenkins RYT Kao R Shapiro 2003 Virtual screening to enrich hit lists from high-throughput screening: A case study on small-molecule inhibitors of angiogenin Proteins 50 1 81 93 10.1002/prot.10270 1:CAS:528: DC%2BD3sXlsVKlsw%3D%3D
    • (2003) Proteins , vol.50 , Issue.1 , pp. 81-93
    • Jenkins, J.L.1    Kao, R.Y.T.2    Shapiro, R.3
  • 30
    • 0002606755 scopus 로고    scopus 로고
    • Virtual screening-an overview
    • 10.1016/S1359-6446(97)01163-X 1:CAS:528:DyaK1cXisVWjur8%3D
    • WP Walters MT Stahl MA Murcko 1998 Virtual screening-an overview Drug Discov Today 3 160 178 10.1016/S1359-6446(97)01163-X 1:CAS:528: DyaK1cXisVWjur8%3D
    • (1998) Drug Discov Today , vol.3 , pp. 160-178
    • Walters, W.P.1    Stahl, M.T.2    Murcko, M.A.3
  • 31
    • 0033194752 scopus 로고    scopus 로고
    • Strategic pooling of compounds for high-throughput screening
    • 1:CAS:528:DyaK1MXksVWkt78%3D
    • M Hann B Hudson X Lewell R Lifely L Miller N Ramsden 1999 Strategic pooling of compounds for high-throughput screening J Chem Inf Comput Sci 39 5 897 902 1:CAS:528:DyaK1MXksVWkt78%3D
    • (1999) J Chem Inf Comput Sci , vol.39 , Issue.5 , pp. 897-902
    • Hann, M.1    Hudson, B.2    Lewell, X.3    Lifely, R.4    Miller, L.5    Ramsden, N.6
  • 32
    • 0023965741 scopus 로고
    • SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules
    • 1:CAS:528:DyaL1cXnsVeqsA%3D%3D
    • D Weininger 1988 SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules J Chem Inf Comput Sci 28 1 31 36 1:CAS:528:DyaL1cXnsVeqsA%3D%3D
    • (1988) J Chem Inf Comput Sci , vol.28 , Issue.1 , pp. 31-36
    • Weininger, D.1
  • 33
    • 0024664539 scopus 로고
    • SMILES. 2. Algorithm for generation of unique SMILES notation
    • 1:CAS:528:DyaL1MXitFWlt7s%3D
    • D Weininger A Weininger J Weininger 1989 SMILES. 2. Algorithm for generation of unique SMILES notation J Chem Inf Comput Sci 29 2 97 101 1:CAS:528:DyaL1MXitFWlt7s%3D
    • (1989) J Chem Inf Comput Sci , vol.29 , Issue.2 , pp. 97-101
    • Weininger, D.1    Weininger, A.2    Weininger, J.3
  • 34
    • 0035289779 scopus 로고    scopus 로고
    • Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
    • DOI 10.1016/S0169-409X(00)00129-0, PII S0169409X00001290
    • C Lipinski F Lombardo B Dominy P Feeney 2001 Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings Adv Drug Deliv Rev 46 1-3 3 26 10.1016/S0169-409X(00)00129-0 1:CAS:528:DC%2BD3MXitVOhs7o%3D (Pubitemid 33653411)
    • (2000) Advanced Drug Delivery Reviews , vol.46 , Issue.1-3 , pp. 3-26
    • Lipinski, C.A.1    Lombardo, F.2    Dominy, B.W.3    Feeney, P.J.4
  • 35
    • 13244266921 scopus 로고    scopus 로고
    • Lead- and drug-like compounds: The rule-of-five revolution
    • DOI 10.1016/j.ddtec.2004.11.007, PII S1740674904000551
    • C Lipinski 2004 Lead- and drug-like compounds: the rule-of-five revolution Drug Discov Today Technol 1 4 337 341 10.1016/j.ddtec.2004.11.007 1:CAS:528:DC%2BD2MXhtlSqsrg%3D (Pubitemid 40186335)
    • (2004) Drug Discovery Today: Technologies , vol.1 , Issue.4 , pp. 337-341
    • Lipinski, C.A.1
  • 36
    • 0031370668 scopus 로고    scopus 로고
    • Comparison of algorithms for dissimilarity-based compound selection
    • DOI 10.1016/S1093-3263(98)00008-4, PII S1093326398000084
    • M Snarey N Terrett P Willett D Wilton 1997 Comparison of algorithms for dissimilarity-based compound selection J Mol Graph Model 15 6 372 385 10.1016/S1093-3263(98)00008-4 1:CAS:528:DyaK1cXltFyktbs%3D (Pubitemid 28409809)
    • (1997) Journal of Molecular Graphics and Modelling , vol.15 , Issue.6 , pp. 372-385
    • Snarey, M.1    Terrett, N.K.2    Willett, P.3    Wilton, D.J.4
  • 37
    • 0020524559 scopus 로고
    • A method of comparing the areas under receiver operating characteristic curves derived from the same cases
    • 1:STN:280:DyaL3s3nsVKgtg%3D%3D
    • J Hanley B McNeil 1983 A method of comparing the areas under receiver operating characteristic curves derived from the same cases Radiology 148 3 839 843 1:STN:280:DyaL3s3nsVKgtg%3D%3D
    • (1983) Radiology , vol.148 , Issue.3 , pp. 839-843
    • Hanley, J.1    McNeil, B.2
  • 38
    • 33846894344 scopus 로고    scopus 로고
    • Receiver-operating characteristic analysis for evaluating diagnostic tests and predictive models
    • DOI 10.1161/CIRCULATIONAHA.105.594929, PII 0000301720070206000016
    • KH Zou AJ O'Malley L Mauri 2007 Receiver-operating characteristic analysis for evaluating diagnostic tests and predictive models Circulation 115 5 654 657 10.1161/CIRCULATIONAHA.105.594929 (Pubitemid 46226175)
    • (2007) Circulation , vol.115 , Issue.5 , pp. 654-657
    • Zou, K.H.1    O'Malley, A.J.2    Mauri, L.3
  • 39
    • 0014432781 scopus 로고
    • Solvent content of protein crystals
    • 10.1016/0022-2836(68)90205-2 1:CAS:528:DyaF1cXktVynurw%3D
    • BW Matthews 1968 Solvent content of protein crystals J Mol Biol 33 2 491 497 10.1016/0022-2836(68)90205-2 1:CAS:528:DyaF1cXktVynurw%3D
    • (1968) J Mol Biol , vol.33 , Issue.2 , pp. 491-497
    • Matthews, B.W.1
  • 41
    • 41149149832 scopus 로고    scopus 로고
    • Molecular dynamics simulations of ethanol binding to the transmembrane domain of the glycine receptor: Implications for the channel potentiation mechanism
    • 10.1002/prot.21784
    • MH Cheng RD Coalson M Cascio 2007 Molecular dynamics simulations of ethanol binding to the transmembrane domain of the glycine receptor: Implications for the channel potentiation mechanism Proteins 71 2 972 981 10.1002/prot.21784
    • (2007) Proteins , vol.71 , Issue.2 , pp. 972-981
    • Cheng, M.H.1    Coalson, R.D.2    Cascio, M.3
  • 42
    • 4143122120 scopus 로고    scopus 로고
    • Classification of kinase inhibitors using a Bayesian model
    • DOI 10.1021/jm0303195
    • X Xia EG Maliski P Gallant D Rogers 2004 Classification of kinase inhibitors using a Bayesian model J Med Chem 47 18 4463 4470 10.1021/jm0303195 1:CAS:528:DC%2BD2cXmt1Sgu78%3D (Pubitemid 39096834)
    • (2004) Journal of Medicinal Chemistry , vol.47 , Issue.18 , pp. 4463-4470
    • Xia, X.1    Maliski, E.G.2    Gallant, P.3    Rogers, D.4
  • 43
    • 33750350511 scopus 로고    scopus 로고
    • Improved naive Bayesian modeling of numerical data for absorption, distribution, metabolism and excretion (ADME) property prediction
    • DOI 10.1021/ci0601315
    • AE Klon JF Lowrie DJ Diller 2006 Improved naive bayesian modeling of numerical data for absorption, distribution, metabolism and excretion (ADME) property prediction J Chem Inf Model 46 5 1945 1956 10.1021/ci0601315 1:CAS:528:DC%2BD28XntVKgsLs%3D (Pubitemid 44625966)
    • (2006) Journal of Chemical Information and Modeling , vol.46 , Issue.5 , pp. 1945-1956
    • Klon, A.E.1    Lowrie, J.F.2    Diller, D.J.3
  • 44
    • 26944503021 scopus 로고    scopus 로고
    • Using extended-connectivity fingerprints with Laplacian-modified Bayesian analysis in high-throughput screening follow-up
    • DOI 10.1177/1087057105281365
    • D Rogers R Brown M Hahn 2005 Using extended-connectivity fingerprints with laplacian-modified bayesian analysis in high-throughput screening follow-up J Biomol Screen 10 7 682 686 10.1177/1087057105281365 1:CAS:528: DC%2BD2MXhtF2qs77L (Pubitemid 41476802)
    • (2005) Journal of Biomolecular Screening , vol.10 , Issue.7 , pp. 682-686
    • Rogers, D.1    Brown, R.D.2    Hahn, M.3
  • 45
    • 5444225766 scopus 로고    scopus 로고
    • A comparative study on feature selection methods for drug discovery
    • 1:CAS:528:DC%2BD2cXlsVelsbY%3D
    • Y Liu 2004 A comparative study on feature selection methods for drug discovery J Chem Inf Comput Sci 44 5 1823 1828 1:CAS:528:DC%2BD2cXlsVelsbY%3D
    • (2004) J Chem Inf Comput Sci , vol.44 , Issue.5 , pp. 1823-1828
    • Liu, Y.1
  • 46
    • 37849002814 scopus 로고    scopus 로고
    • Bayesian screening for active compounds in high-dimensional chemical spaces combining property descriptors and molecular fingerprints
    • 1:CAS:528:DC%2BD1cXhvF2ls7c%3D
    • M Vogt J Bajorath 2008 Bayesian screening for active compounds in high-dimensional chemical spaces combining property descriptors and molecular fingerprints Chem Biol Drug Des 71 1 8 14 1:CAS:528:DC%2BD1cXhvF2ls7c%3D
    • (2008) Chem Biol Drug des , vol.71 , Issue.1 , pp. 8-14
    • Vogt, M.1    Bajorath, J.2
  • 47
    • 16244419065 scopus 로고    scopus 로고
    • Novel pyrrolinones as N-methyl-D-aspartate receptor antagonists
    • DOI 10.1016/j.ejmech.2004.11.010
    • H Poschenrieder H Stachel G Hofner P Mayer 2005 Novel pyrrolinones as N-methyl-D-aspartate receptor antagonists Eur J Med Chem 40 4 391 400 10.1016/j.ejmech.2004.11.010 1:CAS:528:DC%2BD2MXjtlWrt70%3D (Pubitemid 40460301)
    • (2005) European Journal of Medicinal Chemistry , vol.40 , Issue.4 , pp. 391-400
    • Poschenrieder, H.1    Stachel, H.-D.2    Hofner, G.3    Mayer, P.4
  • 48
    • 0028791413 scopus 로고
    • 6, 7, 8, 9-tetrahydro-3-hydroxy-1H-1-benzazepine-2, 5-diones via a diels-alder reaction: Antagonists with a non-planar hydrophobic region for NMDA receptor glycine sites
    • 10.1016/0960-894X(95)00468-9 1:CAS:528:DyaK2MXpsF2gtLg%3D
    • A Guzikowski 1995 6, 7, 8, 9-tetrahydro-3-hydroxy-1H-1-benzazepine-2, 5-diones via a diels-alder reaction: antagonists with a non-planar hydrophobic region for NMDA receptor glycine sites Bioorg Med Chem Lett 5 22 2747 2748 10.1016/0960-894X(95)00468-9 1:CAS:528:DyaK2MXpsF2gtLg%3D
    • (1995) Bioorg Med Chem Lett , vol.5 , Issue.22 , pp. 2747-2748
    • Guzikowski, A.1
  • 49
    • 0037186487 scopus 로고    scopus 로고
    • Synthesis and biological evaluation of a new set of pyrazolo[1,5-c] quinazoline-2-carboxylates as novel excitatory amino acid antagonists
    • DOI 10.1021/jm010995b
    • F Varano D Catarzi V Colotta G Filacchioni A Galli C Costagli V Carla 2002 Synthesis and biological evaluation of a new set of pyrazolo[1, 5-c]quinazoline-2-carboxylates as novel excitatory amino acid antagonists J Med Chem 45 5 1035 1044 10.1021/jm010995b 1:CAS:528:DC%2BD38Xps1aitg%3D%3D (Pubitemid 34176790)
    • (2002) Journal of Medicinal Chemistry , vol.45 , Issue.5 , pp. 1035-1044
    • Varano, F.1    Catarzi, D.2    Colotta, V.3    Filacchioni, G.4    Galli, A.5    Costagli, C.6    Carla, V.7
  • 50
    • 0029062157 scopus 로고
    • Identification of 3, 5-Dihydro-2-aryl-1H-pyrazolo[3, 4-c]quinoline-1, 4(2H)-diones as novel high-affinity glycine site N-methyl-D-aspartate antagonists
    • 10.1021/jm00012a024 1:CAS:528:DyaK2MXlvFWrtbo%3D
    • AM MacLeod S Grimwood C Barton L Bristow KL Saywell GR Marshall RG Ball 1995 Identification of 3, 5-Dihydro-2-aryl-1H-pyrazolo[3, 4-c]quinoline-1, 4(2H)-diones as novel high-affinity glycine site N-methyl-D-aspartate antagonists J Med Chem 38 12 2239 2243 10.1021/jm00012a024 1:CAS:528: DyaK2MXlvFWrtbo%3D
    • (1995) J Med Chem , vol.38 , Issue.12 , pp. 2239-2243
    • MacLeod, A.M.1    Grimwood, S.2    Barton, C.3    Bristow, L.4    Saywell, K.L.5    Marshall, G.R.6    Ball, R.G.7
  • 51
    • 13944275873 scopus 로고    scopus 로고
    • CoMFA, synthesis, and pharmacological evaluation of (E)-3-(2-carboxy-2- arylvinyl)-4,6-dichloro-1H-indole-2-carboxylic acids: 3-[2-(3-Aminophenyl)-2- carboxyvinyl]-4,6-dichloro-1H-indole-2-carboxylic acid, a potent selective glycine-site NMDA receptor antagonist
    • DOI 10.1021/jm0491849
    • BM Baron RJ Cregge RA Farr D Friedrich RS Gross BL Harrison DA Janowick D Matthews TC McCloskey S Meikrantz PL Nyce R Vaz WA Metz 2005 CoMFA, Synthesis, and Pharmacological Evaluation of (E)-3-(2-Carboxy-2-arylvinyl)-4, 6-dichloro-1H-indole-2-carboxylic Acids: 3-[2-(3-Aminophenyl)-2-carboxyvinyl]-4, 6-dichloro-1H-indole-2-carboxylic Acid, a Potent Selective Glycine-Site NMDA Receptor Antagonist J Med Chem 48 4 995 1018 10.1021/jm0491849 1:CAS:528:DC%2BD2MXosFWmtw%3D%3D (Pubitemid 40270445)
    • (2005) Journal of Medicinal Chemistry , vol.48 , Issue.4 , pp. 995-1018
    • Baron, B.M.1    Cregge, R.J.2    Farr, R.A.3    Friedrich, D.4    Gross, R.S.5    Harrison, B.L.6    Janowick, D.A.7    Matthews, D.8    McCloskey, T.C.9    Meikrantz, S.10    Nyce, P.L.11    Vaz, R.12    Metz, W.A.13
  • 52
    • 0026766273 scopus 로고
    • 4-Amido-2-carboxytetrahydroquinolines Structure-activity relationships for antagonism at the glycine site of the NMDA receptor
    • 10.1021/jm00089a004 1:CAS:528:DyaK38XktVyns78%3D
    • PD Leeson RW Carling KW Moore AM Moseley JD Smith G Stevenson T Chan R Baker AC Foster 1992 4-Amido-2-carboxytetrahydroquinolines Structure-activity relationships for antagonism at the glycine site of the NMDA receptor J Med Chem 35 11 1954 1968 10.1021/jm00089a004 1:CAS:528:DyaK38XktVyns78%3D
    • (1992) J Med Chem , vol.35 , Issue.11 , pp. 1954-1968
    • Leeson, P.D.1    Carling, R.W.2    Moore, K.W.3    Moseley, A.M.4    Smith, J.D.5    Stevenson, G.6    Chan, T.7    Baker, R.8    Foster, A.C.9
  • 54
    • 0038037859 scopus 로고    scopus 로고
    • Mechanisms of activation, inhibition and specificity: Crystal structures of the NMDA receptor NR1 ligand-binding core
    • DOI 10.1093/emboj/cdg303
    • H Furukawa E Gouaux 2003 Mechanisms of activation, inhibition and specificity: crystal structures of the NMDA receptor NR1 ligand-binding core EMBO J 22 12 2873 2885 10.1093/emboj/cdg303 1:CAS:528:DC%2BD3sXks1Wqsrk%3D (Pubitemid 36758609)
    • (2003) EMBO Journal , vol.22 , Issue.12 , pp. 2873-2885
    • Furukawa, H.1    Gouaux, E.2
  • 55
    • 20444408992 scopus 로고    scopus 로고
    • Mechanism of partial agonist action at the NR1 subunit of NMDA receptors
    • DOI 10.1016/j.neuron.2005.05.022, PII S0896627305004691
    • A Inanobe H Furukawa E Gouaux 2005 Mechanism of partial agonist action at the NR1 subunit of NMDA receptors Neuron 47 1 71 84 10.1016/j.neuron.2005.05. 022 1:CAS:528:DC%2BD2MXmvV2is7o%3D (Pubitemid 40922851)
    • (2005) Neuron , vol.47 , Issue.1 , pp. 71-84
    • Inanobe, A.1    Furukawa, H.2    Gouaux, E.3
  • 56
    • 33644919954 scopus 로고    scopus 로고
    • Subtype selectivity and flexibility of ionotropic glutamate receptors upon antagonist ligand binding
    • DOI 10.1039/b515111b
    • U Pentikainen L Settimo M Johnson O Pentikainen 2006 Subtype selectivity and flexibility of ionotropic glutamate receptors upon antagonist ligand binding Org Biomol Chem 4 6 1058 1070 10.1039/b515111b (Pubitemid 43383352)
    • (2006) Organic and Biomolecular Chemistry , vol.4 , Issue.6 , pp. 1058-1070
    • Pentikainen, U.1    Settimo, L.2    Johnson, M.S.3    Pentikainen, O.T.4
  • 57
    • 33744950385 scopus 로고    scopus 로고
    • Molecular dynamics simulations of the ligand-binding domain of an N-methyl-D-aspartate receptor
    • DOI 10.1074/jbc.M512728200
    • SL Kaye MS Sansom PC Biggin 2006 Molecular dynamics simulations of the ligand-binding domain of an N-methyl-D-aspartate receptor J Biol Chem 281 18 12736 12742 10.1074/jbc.M512728200 1:CAS:528:DC%2BD28XjvFKkt7k%3D (Pubitemid 43855364)
    • (2006) Journal of Biological Chemistry , vol.281 , Issue.18 , pp. 12736-12742
    • Kaye, S.L.1    Sansom, M.S.P.2    Biggin, P.C.3
  • 58
    • 33645941402 scopus 로고
    • The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin
    • 10.1021/ja00214a001 1:CAS:528:DyaL1cXht1yjt7Y%3D
    • W Jorgensen J Tirado-Rives 1988 The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin J Am Chem Soc 110 6 1657 1666 10.1021/ja00214a001 1:CAS:528:DyaL1cXht1yjt7Y%3D
    • (1988) J Am Chem Soc , vol.110 , Issue.6 , pp. 1657-1666
    • Jorgensen, W.1    Tirado-Rives, J.2
  • 60
    • 1642310340 scopus 로고    scopus 로고
    • Glide: A new approach for rapid, accurate docking and scoring. 2. Enrichment factors in database screening
    • DOI 10.1021/jm030644s
    • TA Halgren RB Murphy RA Friesner HS Beard LL Frye WT Pollard JL Banks 2004 Glide: a new approach for rapid, accurate docking and scoring. 2. Enrichment factors in database screening J Med Chem 47 7 1750 1759 10.1021/jm030644s 1:CAS:528:DC%2BD2cXhsFyit78%3D (Pubitemid 38380918)
    • (2004) Journal of Medicinal Chemistry , vol.47 , Issue.7 , pp. 1750-1759
    • Halgren, T.A.1    Murphy, R.B.2    Friesner, R.A.3    Beard, H.S.4    Frye, L.L.5    Pollard, W.T.6    Banks, J.L.7
  • 62
    • 41349110382 scopus 로고    scopus 로고
    • How to do an evaluation: Pitfalls and traps
    • 10.1007/s10822-007-9166-3 1:CAS:528:DC%2BD1cXjsFOnsLk%3D
    • P Hawkins G Warren A Skillman A Nicholls 2008 How to do an evaluation: pitfalls and traps J Comput Aided Mol Des 22 3-4 179 190 10.1007/s10822-007- 9166-3 1:CAS:528:DC%2BD1cXjsFOnsLk%3D
    • (2008) J Comput Aided Mol des , vol.22 , Issue.34 , pp. 179-190
    • Hawkins, P.1    Warren, G.2    Skillman, A.3    Nicholls, A.4
  • 63
    • 0001681052 scopus 로고
    • The collinearity problem in linear regression. the partial least squares (PLS) approach to generalized inverses
    • 10.1137/0905052
    • S Wold A Ruhe H Wold WJ Dunn 1984 The collinearity problem in linear regression. The partial least squares (PLS) approach to generalized inverses SIAM J Sci Stat Comput 5 3 735 743 10.1137/0905052
    • (1984) SIAM J Sci Stat Comput , vol.5 , Issue.3 , pp. 735-743
    • Wold, S.1    Ruhe, A.2    Wold, H.3    Dunn, W.J.4
  • 65
    • 33846212271 scopus 로고    scopus 로고
    • Comparison of shape-matching and docking as virtual screening tools
    • DOI 10.1021/jm0603365
    • PCD Hawkins AG Skillman A Nicholls 2007 Comparison of shape-matching and docking as virtual screening tools J Med Chem 50 1 74 82 10.1021/jm0603365 1:CAS:528:DC%2BD28Xhtlansb%2FF (Pubitemid 46105500)
    • (2007) Journal of Medicinal Chemistry , vol.50 , Issue.1 , pp. 74-82
    • Hawkins, P.C.D.1    Skillman, A.G.2    Nicholls, A.3
  • 66
    • 37649005977 scopus 로고    scopus 로고
    • Shapelets: Possibilities and limitations of shape-based virtual screening
    • 10.1002/jcc.20770 1:CAS:528:DC%2BD1cXisVCjug%3D%3D
    • E Proschak M Rupp S Derksen G Schneider 2008 Shapelets: possibilities and limitations of shape-based virtual screening J Comput Chem 29 1 108 114 10.1002/jcc.20770 1:CAS:528:DC%2BD1cXisVCjug%3D%3D
    • (2008) J Comput Chem , vol.29 , Issue.1 , pp. 108-114
    • Proschak, E.1    Rupp, M.2    Derksen, S.3    Schneider, G.4
  • 67
    • 0033859321 scopus 로고    scopus 로고
    • A novel series of 2-carboxytetrahydroquinolines provides new insights into the eastern region of glycine site NMDA antagonists
    • DOI 10.1002/1521-4184(20008)333:8<267::AID-ARDP267>3.0.CO;2-0
    • G Dannhardt M von Gruchalla BK Kohl CG Parsons 2000 A novel series of 2-carboxytetrahydroquinolines provides new insights into the eastern region of glycine site NMDA antagonists Arch Pharm (Weinheim) 333 8 267 274 10.1002/1521-4184(20008)333:8<267::AID-ARDP267>3.0.CO;2-0 1:CAS:528:DC%2BD3cXmsVaktrs%3D (Pubitemid 30680496)
    • (2000) Archiv der Pharmazie , vol.333 , Issue.8 , pp. 267-274
    • Dannhardt, G.1    Gruchalla, M.V.2    Kohl, B.K.3    Parsons, C.G.4
  • 68
    • 0035821587 scopus 로고    scopus 로고
    • Structure-activity relationships of 1,4-dihydro-(1H,4H)-quinoxaline-2,3- diones as N-methyl-D-aspartate (glycine site) receptor antagonists. 1. Heterocyclic substituted 5-alkyl derivatives
    • DOI 10.1021/jm001124p
    • MJ Fray DJ Bull CL Carr ECL Gautier CE Mowbray A Stobie 2001 Structure-activity relationships of 1, 4-dihydro-(1H, 4H)-quinoxaline-2, 3-diones as N-methyl-d-aspartate (glycine site) receptor antagonists. 1. Heterocyclic substituted 5-alkyl derivatives J Med Chem 44 12 1951 1962 10.1021/jm001124p 1:CAS:528:DC%2BD3MXjt1Sgtbc%3D (Pubitemid 32884519)
    • (2001) Journal of Medicinal Chemistry , vol.44 , Issue.12 , pp. 1951-1962
    • Fray, M.J.1    Bull, D.J.2    Carr, C.L.3    Gautier, E.C.L.4    Mowbray, C.E.5    Stobie, A.6
  • 69
    • 0030302457 scopus 로고    scopus 로고
    • [3H]MDL 105, 519, a high-affinity radioligand for the N-methyl-d-aspartate receptor-associated glycine recognition site
    • 1:CAS:528:DyaK28XmtlemtLk%3D
    • B Baron B Siegel B Harrison R Gross C Hawes P Towers 1996 [3H]MDL 105, 519, a high-affinity radioligand for the N-methyl-d-aspartate receptor-associated glycine recognition site J Pharmacol Exp Ther 279 1 62 68 1:CAS:528:DyaK28XmtlemtLk%3D
    • (1996) J Pharmacol Exp Ther , vol.279 , Issue.1 , pp. 62-68
    • Baron, B.1    Siegel, B.2    Harrison, B.3    Gross, R.4    Hawes, C.5    Towers, P.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.