A systems model of vesicle trafficking in Arabidopsis pollen tubes

Plant Physiology

Volumn 152, Issue 2, 2010, Pages 590-601

  Kato, Naohiro ^a   He, Hongyu ^a   Steger, Alexander P ^a  

^a LOUISIANA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 75949126250     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.109.148700     Document Type: Article

References (67)

1. Achard P, Herr A, Baulcombe DC, Harberd NP (2004) Modulation of floral development by a gibberellin-regulated microRNA. Development 131: 3357-3365
2. Allen RS, Li J, Stahle MI, Dubroue A, Gubler F, Millar AA (2007) Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family. Proc Natl Acad Sci USA 104: 16371-16376
3. Anders N, Jurgens G (2008) Large ARF guanine nucleotide exchange factors in membrane trafficking. Cell Mol Life Sci 65: 3433-3445
4. Behnia R, Munro S (2005) Organelle identity and the signposts for membrane traffic. Nature 438: 597-604
5. Benli M, Doring F, Robinson DG, Yang X, Gallwitz D (1996) Two GTPase isoforms, Ypt31p and Ypt32p, are essential for Golgi function in yeast. EMBO J 15: 6460-6475
6. Boavida LC, McCormick S (2007) Temperature as a determinant factor for increased and reproducible in vitro pollen germination in Arabidopsis thaliana. Plant J 52: 570-582
7. Boavida LC, Shuai B, Yu HJ, Pagnussat GC, Sundaresan V, McCormick S (2009) A collection of Ds insertional mutants associated with defects in male gametophyte development and function in Arabidopsis thaliana. Genetics 181: 1369-1385
8. Boehm M, Bonifacino JS (2001) Adaptins: the final recount. Mol Biol Cell 12: 2907-2920
9. Borges F, Gomes G, Gardner R, Moreno N, McCormick S, Feijo JA, Becker JD (2008) Comparative transcriptomics of Arabidopsis sperm cells. Plant Physiol 148: 1168-1181
10. Bove J, Vaillancourt B, Kroeger J, Hepler PK, Wiseman PW, Geitmann A (2008) Magnitude and direction of vesicle dynamics in growing pollen tubes using spatiotemporal image correlation spectroscopy and fluorescence recovery after photobleaching. Plant Physiol 147: 1646-1658
11. Cai G, Cresti M (2009) Organelle motility in the pollen tube: a tale of 20 years. J Exp Bot 60: 495-508
12. Cai H, Reinisch K, Ferro-Novick S (2007) Coats, tethers, Rabs, and SNAREs work together to mediate the intracellular destination of a transport vesicle. Dev Cell 12: 671-682
13. Cao D, Cheng H, Wu W, Soo HM, Peng J (2006) Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis. Plant Physiol 142: 509-525
14. Carr CM, Novick PJ (2000) Membrane fusion: changing partners. Nature 404: 347-349
15. Chen CY, Balch WE (2006) The Hsp90 chaperone complex regulates GDI-dependent Rab recycling. Mol Biol Cell 17: 3494-3507
16. Cheng H, Qin L, Lee S, Fu X, Richards DE, Cao D, Luo D, Harberd NP, Peng J (2004) Gibberellin regulates Arabidopsis floral development via suppression of DELLA protein function. Development 131: 1055-1064
17. Chhun T, Aya K, Asano K, Yamamoto E, Morinaka Y, Watanabe M, Kitano H, Ashikari M, Matsuoka M, Ueguchi-Tanaka M (2007) Gibberellin regulates pollen viability and pollen tube growth in rice. Plant Cell 19: 3876-3888
18. Cole RA, Synek L, Zarsky V, Fowler JE (2005) SEC8, a subunit of the putative Arabidopsis exocyst complex, facilitates pollen germination and competitive pollen tube growth. Plant Physiol 138: 2005-2018
19. Derksen J, Knuiman B, Hoedemaekers K, Guyon A, Bonhomme S, Pierson ES (2002) Growth and cellular organization of Arabidopsis pollen tubes in vitro. Sex Plant Reprod 15: 133-139
20. Derksen J, Rutten T, Lichtscheidl IK, de Win AHN, Pierson ES, Rongen G (1995) Quantitative analysis of the distribution of organelles in tobacco pollen tubes: implications for exocytosis and endocytosis. Protoplasma 188: 267-276
21. Elias M, Drdova E, Ziak D, Bavlnka B, Hala M, Cvrckova F, Soukupova H, Zarsky V (2003) The exocyst complex in plants. Cell Biol Int 27: 199-201
22. Enami K, Ichikawa M, Uemura T, Kutsuna N, Hasezawa S, Nakagawa T, Nakano A, Sato MH (2009) Differential expression control and polarized distribution of plasma membrane-resident SYP1 SNAREs in Arabidopsis thaliana. Plant Cell Physiol 50: 280-289
23. Fujiki Y, Yoshimoto K, Ohsumi Y (2007) An Arabidopsis homolog of yeast ATG6/VPS30 is essential for pollen germination. Plant Physiol 143: 1132-1139
24. Grosshans BL, Ortiz D, Novick P (2006) Rabs and their effectors: achieving specificity in membrane traffic. Proc Natl Acad Sci USA 103: 11821-11827
25. Hala M, Cole R, Synek L, Drdova E, Pecenkova T, Nordheim A, Lamkemeyer T, Madlung J, Hochholdinger F, Fowler JE, et al (2008) An exocyst complex functions in plant cell growth in Arabidopsis and tobacco. Plant Cell 20: 1330-1345
26. He B, Guo W (2009) The exocyst complex in polarized exocytosis. Curr Opin Cell Biol 21: 537-542
27. Heinrich R, Rapoport TA (2005) Generation of nonidentical compartments in vesicular transport systems. J Cell Biol 168: 271-280
28. Hofmann KP, Spahn CM, Heinrich R, Heinemann U (2006) Building functional modules from molecular interactions. Trends Biochem Sci 31: 497-508
29. Honys D, Twell D (2004) Transcriptome analysis of haploid male gametophyte development in Arabidopsis. Genome Biol 5: R85
30. Hruz T, Laule O, Szabo G, Wessendorp F, Bleuler S, Oertle L, Widmayer P, Gruissem W, Zimmermann P (2008) Genevestigator V3: a reference expression database for the meta-analysis of transcriptomes. Adv Bioinformatics 2008: 420747
31. Ischebeck T, Stenzel I, Heilmann I (2008) Type B phosphatidylinositol-4-phosphate 5-kinases mediate Arabidopsis and Nicotiana tabacum pollen tube growth by regulating apical pectin secretion. Plant Cell 20: 3312-3330
32. Jakobsen MK, Poulsen LR, Schulz A, Fleurat-Lessard P, Moller A, Husted S, Schiott M, Amtmann A, Palmgren MG (2005) Pollen development and fertilization in Arabidopsis is dependent on the MALE GAMETO-GENESIS IMPAIRED ANTHERS gene encoding a type V P-type ATPase. Genes Dev 19: 2757-2769
33. Jedd G, Mulholland J, Segev N (1997) Two new Ypt GTPases are required for exit from the yeast trans-Golgi compartment. J Cell Biol 137: 563-580
34. Kaneko M, Inukai Y, Ueguchi-Tanaka M, Itoh H, Izawa T, Kobayashi Y, Hattori T, Miyao A, Hirochika H, Ashikari M, et al (2004) Loss-of-function mutations of the rice GAMYB gene impair a-amylase expression in aleurone and flower development. Plant Cell 16: 33-44
35. Ketelaar T, Galway ME, Mulder BM, Emons AM (2008) Rates of exocytosis and endocytosis in Arabidopsis root hairs and pollen tubes. J Microsc 231: 265-273
36. Kitano H (2002) Systems biology: a brief overview. Science 295: 1662-1664 Kroeger JH, Geitmann A, Grant M (2008) Model for calcium dependent oscillatory growth in pollen tubes. J Theor Biol 253: 363-374
37. Lam SK, Tse YC, Robinson DG, Jiang L (2007) Tracking down the elusive early endosome. Trends Plant Sci 12: 497-505
38. Lee Y, Kim ES, Choi Y, Hwang I, Staiger CJ, Chung YY (2008) The Arabidopsis phosphatidylinositol 3-kinase is important for pollen development. Plant Physiol 147: 1886-1897
39. Lee YJ, Yang Z (2008) Tip growth: signaling in the apical dome. Curr Opin Plant Biol 11: 662-671
40. Lin WH, Ye R, Ma H, Xu ZH, Xue HW (2004) DNA chip-based expression profile analysis indicates involvement of the phosphatidylinositol signaling pathway in multiple plant responses to hormone and abiotic treatments. Cell Res 14: 34-45
41. Markgraf DF, Peplowska K, Ungermann C (2007) Rab cascades and tethering factors in the endomembrane system. FEBS Lett 581: 2125-2130
42. Moscatelli A, Ciampolini F, Rodighiero S, Onelli E, Cresti M, Santo N, Idilli A (2007) Distinct endocytic pathways identified in tobacco pollen tubes using charged nanogold. J Cell Sci 120: 3804-3819
43. Otegui MS, Spitzer C (2008) Endosomal functions in plants. Traffic 9: 1589-1598
44. Paul MJ, Frigerio L (2007) Coated vesicles in plant cells. Semin Cell Dev Biol 18: 471-478
45. Pina C, Pinto F, Feijo JA, Becker JD (2005) Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation. Plant Physiol 138: 744-756
46. Ridley AJ (2006) Rho GTPases and actin dynamics in membrane protrusions and vesicle trafficking. Trends Cell Biol 16: 522-529
47. Robinson DG, Jiang L, Schumacher K (2008) The endosomal system of plants: charting new and familiar territories. Plant Physiol 147: 1482-1492
48. Rojo E, Denecke J (2008) What is moving in the secretory pathway of plants? Plant Physiol 147: 1493-1503
49. Samaj J, Muller J, Beck M, Bohm N, Menzel D (2006) Vesicular trafficking, cytoskeleton and signalling in root hairs and pollen tubes. Trends Plant Sci 11: 594-600
50. Samaj J, Read ND, Volkmann D, Menzel D, Baluska F (2005) The endocytic network in plants. Trends Cell Biol 15: 425-433
51. Sanderfoot A, Raikhel N (2003) The secretory system of Arabidopsis. In The Arabidopsis Book. American Society of Plant Biologists, Rockville, MD, doi/, http://www.aspb.org/publications/arabidopsis/
52. Sangster TA, Bahrami A, Wilczek A, Watanabe E, Schellenberg K, McLellan C, Kelley A, Kong SW, Queitsch C, Lindquist S (2007) Phenotypic diversity and altered environmental plasticity in Arabidopsis thaliana with reduced Hsp90 levels. PLoS One 2: e648
53. Schmid EM, McMahon HT (2007) Integrating molecular and network biology to decode endocytosis. Nature 448: 883-888
54. Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, Weigel D (2005) Specific effects of microRNAs on the plant transcriptome. Dev Cell 8: 517-527
55. Seabra MC, Wasmeier C (2004) Controlling the location and activation of Rab GTPases. Curr Opin Cell Biol 16: 451-457
56. Silverstone AL, Mak PY, Martinez EC, Sun TP (1997) The new RGA locus encodes a negative regulator of gibberellin response in Arabidopsis thaliana. Genetics 146: 1087-1099
57. Sorensen JB, Wiederhold K, Muller EM, Milosevic I, Nagy G, de Groot BL, Grubmuller H, Fasshauer D (2006) Sequential N-to C-terminal SNARE complex assembly drives priming and fusion of secretory vesicles. EMBO J 25: 955-966
58. Sousa E, Kost B, Malho R (2008) Arabidopsis phosphatidylinositol-4-monophosphate 5-kinase 4 regulates pollen tube growth and polarity by modulating membrane recycling. Plant Cell 20: 3050-3064
59. Stein A, Weber G, Wahl MC, Jahn R (2009) Helical extension of the neuronal SNARE complex into the membrane. Nature 460: 525-528
60. Synek L, Schlager N, Elias M, Quentin M, Hauser MT, Zarsky V (2006) AtEXO70A1, a member of a family of putative exocyst subunits specifically expanded in land plants, is important for polar growth and plant development. Plant J 48: 54-72
61. Szumlanski AL, Nielsen E (2009) The Rab GTPase RabA4d regulates pollen tube tip growth in Arabidopsis thaliana. Plant Cell 21: 526-544
62. Tsuji H, Aya K, Ueguchi-Tanaka M, Shimada Y, Nakazono M, Watanabe R, Nishizawa NK, Gomi K, Shimada A, Kitano H, et al (2006) GAMYB controls different sets of genes and is differentially regulated by micro-RNA in aleurone cells and anthers. Plant J 47: 427-444
63. Van Damme D, Coutuer S, De Rycke R, Bouget FY, Inze D, Geelen D (2006) Somatic cytokinesis and pollen maturation in Arabidopsis depend on TPLATE, which has domains similar to coat proteins. Plant Cell 18: 3502-3518
64. Vernoud V, Horton AC, Yang Z, Nielsen E (2003) Analysis of the small GTPase gene superfamily of Arabidopsis. Plant Physiol 131: 1191-1208
65. Wang Y, Zhang WZ, Song LF, Zou JJ, Su Z, Wu WH (2008) Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. Plant Physiol 148: 1201-1211
66. Yoshizawa AC, Kawashima S, Okuda S, Fujita M, Itoh M, Moriya Y, Hattori M, Kanehisa M (2006) Extracting sequence motifs and the phylogenetic features of SNARE-dependent membrane traffic. Traffic 7: 1104-1118
67. Zonia L, Munnik T (2008) Vesicle trafficking dynamics and visualization of zones of exocytosis and endocytosis in tobacco pollen tubes. J Exp Bot 59: 861-873