A collection of Ds insertional mutants associated with defects in male gametophyte development and function in Arabidopsis thaliana

Genetics

Volumn 181, Issue 4, 2009, Pages 1369-1385

  Boavida, Leonor C ^a   Shuai, Bin ^a,c   Yu, Hee Ju ^b,d   Pagnussat, Gabriela C ^b   Sundaresan, Venkatesan ^b   McCormick, Sheila ^a  

^a PLANT GENE EXPRESSION CENTER   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c WICHITA STATE UNIVERSITY   (United States)

^d National Institute of Animal Science   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

SPACER DNA; ARABIDOPSIS PROTEIN; PEI1 PROTEIN, ARABIDOPSIS; PGP PROTEIN, PLANT; TRANSCRIPTION FACTOR; VEGETABLE PROTEIN;

ARABIDOPSIS; ARTICLE; CHROMOSOME REARRANGEMENT; CONTROLLED STUDY; DNA TRANSPOSITION; EMBRYO; FEMALE; FERTILIZATION; GAMETOGENESIS; GENE DELETION; GENE INSERTION SEQUENCE; GENE TRANSLOCATION; GERMINATION; INDEL MUTATION; MALE; MALE GAMETOPHYTE; MOLECULAR INTERACTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT DEVELOPMENT; PLANT GENOME; POLLEN TUBE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; GENE EXPRESSION REGULATION; GENETICS; GERM CELL; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PHENOTYPE; PHYSIOLOGY; PLANT GENE; POLLEN; SEXUAL DEVELOPMENT; TRANSGENIC PLANT;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; DNA MUTATIONAL ANALYSIS; FERTILIZATION; GAMETOGENESIS; GENES, PLANT; GERM CELLS; MUTAGENESIS, INSERTIONAL; PHENOTYPE; PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED; POLLEN; POLLEN TUBE; SEX CHARACTERISTICS; TRANSCRIPTION FACTORS;

EID: 67650287292     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.108.090852     Document Type: Article

References (84)

1. AZUMA, M., R. TOYAMA, E. LAVER and I. B. DAWID, 2006 Perturbation of rRNA synthesis in the bap28 mutation leads to apoptosis mediated by p53 in the zebrafish central nervous system. J. Biol. Chem. 281: 13309-13316.
2. BECKER, J. D., L. C. BOAVIDA, J. CARNEIRO, M. HAURY and J. A. FEIJO, 2003 Transcriptional profiling of Arabidopsis tissues reveals the unique characteristics of the pollen transcriptome. Plant Physiol. 133: 713-725.
3. BLATCH, G. L., and M. LASSLE, 1999 The tetratricopeptide repeat: a structural motif mediating protein-protein interactions. Bio-Essays 21: 932-939.
4. BOAVIDA, L. C., and S. MCCORMICk, 2007 Temperature as a determinant factor for increased and reproducible in vitro pollen germination in Arabidopsis thaliana. Plant J. 52: 570-582.
5. BOAVIDA, L. C., A. M. VIEIRA, J. D. BECKER and J. A. FEIJO, 2005 Gametophyte interaction and sexual reproduction: how plants make a zygote. Int. J. Dev. Biol. 49: 615-632.
6. BOISSON-DERNIER, A., S. FRIETSCH, T. H. KIM, M. B. DIZON and J. I. SCHROEDER, 2008 The peroxin loss-of-function mutation abstinence by mutual consent disrupts male-female gametophyte recognition. Curr. Biol. 18: 63-68.
7. BONHOMME, S., C. HORLOW, D. VEZON, S. DE LAISSARDIERE, A. GUYON et al., 1998 T-DNA mediated disruption of essential gametophytic genes in Arabidopsis is unexpectedly rare and cannot be inferred from segregation distortion alone. Mol. Gen. Genet. 260: 444-452.
8. CHEN, Y. C., and S. MCCORMICK, 1996 sidecar pollen, an Arabidopsis thaliana male gametophytic mutant with aberrant cell divisions during pollen development. Development 122: 3243-3253.
9. CHEN, Z., J. L. TAN, M. INGOUFF, V. SUNDARESAN and F. BERGER, 2008 Chromatin assembly factor 1 regulates the cell cycle but not cell fate during male gametogenesis in Arabidopsis thaliana. Development 135: 65-73.
10. CHRISTENSEN, C. A., S. SUBRAMANIAN and G. N. DREWS, 1998 Identification of gametophytic mutations affecting female gametophyte development in Arabidopsis. Dev. Biol. 202: 136-151.
11. COLE, R. A., and J. E. FOWLER, 2006 Polarized growth: maintaining focus on the tip. Curr. Opin. Plant Biol. 9: 579-588.
12. DE LA CRUZ, J., D. KRESSLER, D. TOLLERVEY and P. LINDER, 1998 Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 39 end formation of 5.8S rRNA in Saccharomyces cerevisiae. EMBO J. 17: 1128-1140. (Pubitemid 28077666)
13. DING, L., L. M. FAN and S. M. ASSMANN, 2007 pgd1, an Arabidopsis thaliana deletion mutant, is defective in pollen germination. Sex Plant Reprod. 20: 137-149.
14. DRESSELHAUS, T., 2006 Cell-cell communication during double fertilization. Curr. Opin. Plant Biol. 9: 41-47.
15. DREWS, G. N., and R. YADEGARI, 2002 Development and function of the angiosperm female gametophyte. Annu. Rev. Genet. 36: 99-124.
16. EDWARDS, K., C. JOHNSTONE and C. THOMPSON, 1991 A simple and rapid method for the preparation of plant genomic DNA for PCR analysis. Nucleic Acids Res. 19: 1349.
17. ESCOBAR-RESTREPO, J. M., N. HUCK, S. KESSLER, V. GAGLIARDINI, J. GHEYSELINCK et al., 2007 The FERONIA receptor-like kinase mediates male-female interactions during pollen tube reception. Science 317: 656-660.
18. FELDMANN, K. A., D. A. COURY and M. L. CHRISTIANSON, 1997 Exceptional segregation of a selectable marker (KanR) in Arabidopsis identifies genes important for gametophytic growth and development. Genetics 147: 1411-1422.
19. FORSBACH, A., D. SCHUBERT, B. LECHTENBERG, M. GILS and R. SCHMIDT, 2003 A comprehensive characterization of single-copy T-DNA insertions in the Arabidopsis thaliana genome. Plant Mol. Biol. 52: 161-176.
20. GOLOVKIN, M., and A. S. REDDY, 2003 A calmodulin-binding protein from Arabidopsis has an essential role in pollen germination. Proc. Natl. Acad. Sci. USA 100: 10558-10563.
21. GONG, Z., H. LEE, L. XIONG, A. JAGENDORF, B. STEVENSON et al., 2002 RNA helicase-like protein as an early regulator of transcription factors for plant chilling and freezing tolerance. Proc. Natl. Acad. Sci. USA 99: 11507-11512.
22. GOYAL, K., L. J. WALTON and A. TUNNACLIFFE, 2005 LEA proteins prevent protein aggregation due to water stress. Biochem. J. 388: 151-157.
23. GUITTON, A. E., and F. BERGER, 2005 Loss of function of MULTI-COPY SUPPRESSOR OF IRA 1 produces nonviable parthenogenetic embryos in Arabidopsis. Curr. Biol. 15: 750-754.
24. HARDIE, D. G., 1999 Plant protein serine/threonine kinases: classification and functions. Annu. Rev. Plant Physiol. Plant Mol. Biol. 50: 97-131.
25. HESLOP HARRISON, J., Y. HESLOP HARRISON and K. R. SHIVANNA, 1984 The evaluation of pollen quality, and a further appraisal of the fluorochromatic (FCR) test procedure. Theor. Appl. Genet. 67: 367-375.
26. HIGASHIYAMA, T., S. YABE, N. SASAKI, Y. NISHIMURA, S. MIYAGISHIMA et al., 2001 Pollen tube attraction by the synergid cell. Science 293: 1480-1483.
27. HOLMES-DAVIS, R., C. K. TANAKA, W. H. VENSEL, W. J. HURKMAN and S. MCCORMICK, 2005 Proteome mapping of mature pollen of Arabidopsis thaliana. Proteomics 5: 4864-4884. (Pubitemid 43016906)
28. HONG-BO, S., L. ZONG-SUO and S. MING-AN, 2005 LEA proteins in higher plants: structure, function, gene expression and regulation. Colloids Surf. B Biointerfaces 45: 131-135.
29. HONYS, D., and D. TWELL, 2003 Comparative analysis of the Arabidopsis pollen transcriptome. Plant Physiol. 132: 640-652.
30. HONYS, D., and D. TWELL, 2004 Transcriptome analysis of haploid male gametophyte development in Arabidopsis. Genome Biol. 5: R85.
31. HOWDEN, R., S. K. PARK, J. M. MOORE, J. ORME, U. GROSSNIKLAUS et al., 1998 Selection of T-DNA-tagged male and female gametophytic mutants by segregation distortion in Arabidopsis. Genetics 149: 621-631.
32. HUCK, N., J. M. MOORE, M. FEDERER and U. GROSSNIKLAUS, 2003 The Arabidopsis mutant feronia disrupts the female gametophytic control of pollen tube reception. Development 130: 2149-2159.
33. ITO, T., R. MOTOHASHI, T. KUROMORI, S. MIZUKADO, T. SAKURAI et al., 2002 A new resource of locally transposed dissociation elements for screening gene-knockout lines in silico on the Arabidopsis genome. Plant Physiol. 129: 1695-1699.
34. JACOBSEN, S. E., M. P. RUNNING and E. M. MEYEROWITZ, 1999 Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems. Development 126: 5231-5243.
35. JOHNSON, M. A., K. VON BESSER, Q. ZHOU, E. SMITH, G. AUX et al., 2004 Arabidopsis hapless mutations define essential gametophytic functions. Genetics 168: 971-982.
36. JOHNSON, S. A., and S. MCCORMICK, 2001 Pollen germinates precociously in the anthers of raring-to-go, an Arabidopsis gametophytic mutant. Plant Physiol. 126: 685-695.
37. JOHNSON-BROUSSEAU, S. A., and S. MCCORMICK, 2004 A compendium of methods useful for characterizing Arabidopsis pollen mutants and gametophytically- expressed genes. Plant J. 39: 761-775.
38. JOHNSTON, A. J., P. MEIER, J. GHEYSELINCK, S. E. WUEST, M. FEDERER et al., 2007 Genetic subtraction profiling identifies genes essential for Arabidopsis reproduction and reveals interaction between the female gametophyte and the maternal sporophyte. Genome Biol. 8: R204.
39. LALANNE, E., and D. TWELL, 2002 Genetic control of male germ unit organization in Arabidopsis. Plant Physiol. 129: 865-875.
40. LALANNE, E., C. MICHAELIDIS, J. M. MOORE, W. GAGLIANO, A. JOHNSON et al., 2004 Analysis of transposon insertion mutants highlights the diversity of mechanisms underlying male progamic development in Arabidopsis. Genetics 167: 1975-1986.
41. LAUFS, P., D. AUTRAN and J. TRAAS, 1999 A chromosomal paracentric inversion associated with T-DNA integration in Arabidopsis. Plant J. 18: 131-139. (Pubitemid 129516628)
42. LIU, C. M., and D. W. MEINKE, 1998 The titan mutants of Arabidopsis are disrupted in mitosis and cell cycle control during seed development. Plant J. 16: 21-31. (Pubitemid 28476675)
43. LIU, Y. G., N. MITSUKAWA, T. OOSUMI and R. F. WHITTIER, 1995 Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J. 8: 457-463.
44. LUSH, W. M., F. GRIESER and M. WOLTERS-ARTS, 1998 Directional guidance of Nicotiana alata pollen tubes in vitro and on the stigma. Plant Physiol. 118: 733-741.
45. MARTIN, F. W., 1959 Staining and observing pollen tubes in the style by means of fluorescence. Stain Technol. 34: 125-128.
46. MASCARENHAS, J. P., 1990 Gene activity during pollen development. Annu. Rev. Plant Physiol. 41: 317-331.
47. MCCORMICK, S., 2004 Control of male gametophyte development. Plant Cell 16(Suppl.): S142-S153.
48. MILLAR, A. A., S. CLEMENS, S. ZACHGO, E. M. GIBLIN, D. C. TAYLOR et al., 1999 CUT1, an Arabidopsis gene required for cuticular wax biosynthesis and pollen fertility, encodes a very-long-chain fatty acid condensing enzyme. Plant Cell 11: 825-838.
49. MURASHIGE, T., and F. SKOOG, 1962 A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol. Plant 15: 473.
50. MURRAY, M. G., and W. F. THOMPSON, 1980 Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8: 4321-4325.
51. OH, S. A., S. K. PARK, I. JANG, R. HOWDEN, J. M. MOORE et al., 2003 halfman, an Arabidopsis male gametophytic mutant associated with a 150 kb chromosomal deletion adjacent to an introduced Ds transposable element. Sex. Plant Reprod. 16: 99-102.
52. PAGE, D. R., C. KOHLER, J. A. DA COSTA-NUNES, C. BAROUX, J. M. MOORE et al., 2004 Intrachromosomal excision of a hybrid Ds element induces large genomic deletions in Arabidopsis. Proc. Natl. Acad. Sci. USA 101: 2969-2974.
53. PAGNUSSAT, G. C., H. J. YU, Q. A. NGO, S. RAJANI, S. MAYALAGU et al., 2005 Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Development 132: 603-614.
54. PARK, S. K., R. HOWDEN and D. TWELL, 1998 The Arabidopsis thaliana gametophytic mutation gemini pollen1 disrupts microspore polarity, divisionasymmetry andpollencell fate. Development 125: 3789-3799.
55. PINA, C., F. PINTO, J. A. FEIJO and J. D. BECKER, 2005 Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation. Plant Physiol. 138: 744-756.
56. PREUSS, D., B. LEMIEUX, G. YEN and R. W. DAVIS, 1993 A conditional sterile mutation eliminates surface components from Arabidopsis pollen and disrupts cell signaling during fertilization. Genes Dev. 7: 974-985. (Pubitemid 23170822)
57. PROCISSI, A., S. DE LAISSARDIERE, M. FERAULT, D. VEZON, G. PELLETIER et al., 2001 Five gametophytic mutations affecting pollen development and pollen tube growth in Arabidopsis thaliana. Genetics 158: 1773-1783.
58. RAINA, S., R. MAHALINGAM, F. CHEN and N. FEDOROFF, 2002 A collection of sequenced and mapped Ds transposon insertion sites in Arabidopsis thaliana. Plant Mol. Biol. 50: 93-110.
59. RAY, S. M., S. S. PARK and A. RAY, 1997 Pollen tube guidance by the female gametophyte. Development 124: 2489-2498.
60. ROTMAN, N., F. ROZIER, L. BOAVIDA, C. DUMAS, F. BERGER et al., 2003 Female control of male gamete delivery during fertilization in Arabidopsis thaliana. Curr. Biol. 13: 432-436.
61. ROTMAN, N., A. DURBARRY, A. WARDLE, W. C. YANG, A. CHABOUD et al., 2005 A novel class of MYB factors controls sperm cell formation in plants. Curr. Biol. 15: 244-248.
62. SACHER, M., Y. JIANG, J. BARROWMAN, A. SCARPA, J. BURSTON et al., 1998 TRAPP, a highly conserved novel complex on the cis-Golgi that mediates vesicle docking and fusion. EMBO J. 17: 2494-2503.
63. SANDERFOOT, A. A., M. PILGRIM, L. ADAM and N. V. RAIKHEL, 2001 Disruption of individual members of Arabidopsis syntaxin gene families indicates each has essential functions. Plant Cell 13: 659-666.
64. SCHIOTT, M., S. M. ROMANOWSKY, L. BAEKGAARD, M. K. JAKOBSEN, M. G. PALMGREN et al., 2004 A plant plasma membrane Ca21 pump is required for normal pollen tube growth and fertilization. Proc. Natl. Acad. Sci. USA 101: 9502-9507.
65. SHIMIZU, K. K., and K. OKADA, 2000 Attractive and repulsive interactions between female and male gametophytes in Arabidopsis pollen tube guidance. Development 127: 4511-4518.
66. SIDDIQI, I., G. GANESH, U. GROSSNIKLAUS and V. SUBBIAH, 2000 The dyad gene is required for progression through female meiosis in Arabidopsis. Development 127: 197-207.
67. SIEBERT, P. D., A. CHENCHIK, D. E. KELLOGG, K. A. LUKYANOV and S. A. LUKYANOV, 1995 An improved PCR method for walking in uncloned genomic DNA. Nucleic Acids Res. 23: 1087-1088.
68. SMYTH, D. R., J. L. BOWMAN and E. M. MEYEROWITZ, 1990 Early flower development in Arabidopsis. Plant Cell 2: 755-767.
69. SONG, X. F., C. Y. YANG, J. LIU and W. C. YANG, 2006 RPA, a class II ARFGAP protein, activates ARF1 and U5 and plays a role in root hair development in Arabidopsis. Plant Physiol. 141: 966-976.
70. SPRINGER, P. S., 2000 Gene traps: tools for plant development and genomics. Plant Cell 12: 1007-1020.
71. STEFFEN, J. G., I. H. KANG, J. MACFARLANE and G. N. DREWS, 2007 Identification of genes expressed in the Arabidopsis female gametophyte. Plant J. 51: 281-292. (Pubitemid 47030122)
72. STEINEBRUNNER, I., J. WU, Y. SUN, A. CORBETT and S. J. ROUX, 2003 Disruption of apyrases inhibits pollen germination in Arabidopsis. Plant Physiol. 131: 1638-1647.
73. SUNDARESAN, V., P. SPRINGER, T. VOLPE, S. HAWARD, J. D. JONES et al., 1995 Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements. Genes Dev. 9: 1797-1810.
74. TAKUBO, K., T. MORIKAWA, Y. NONAKA, M. MIZUTANI, S. TAKENAKA et al., 2003 Identification and molecular characterization of mitochondrial ferredoxins and ferredoxin reductase from Arabidopsis. Plant Mol. Biol. 52: 817-830.
75. TAX, F. E., and D. M. VERNON, 2001 T-DNA-associated duplication/ translocations in Arabidopsis. Implications for mutant analysis and functional genomics. Plant Physiol. 126: 1527-1538.
76. TISSIER, A. F., S. MARILLONNET, V. KLIMYUK, K. PATEL, M. A. TORRES et al., 1999 Multiple independent defective suppressor-mutator transposon insertions in Arabidopsis: a tool for functional genomics. Plant Cell 11: 1841-1852.
77. VERNOUD, V., A. C. HORTON, Z. YANG and E. NIELSEN, 2003 Analysis of the small GTPase gene superfamily of Arabidopsis. Plant Physiol. 131: 1191-1208.
78. WANG, Y., W. Z. ZHANG, L. F. SONG, J. J. ZOU, Z. SU et al., 2008 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. Plant Physiol. 148: 1201-1211.
79. WESTERN, T. L., Y. CHENG, J. LIU and X. CHEN, 2002 HUAENHANCER2, a putative DExH-box RNA helicase, maintains homeotic B and C gene expression in Arabidopsis. Development 129: 1569-1581.
80. WILLMANN, M. R., 2001 Unravelling PTGS: SDE3 - an RNA helicase involved in RNA silencing in Arabidopsis. Trends Plant Sci. 6: 344-345. (Pubitemid 33141645)
81. YADEGARI, R., and G. N. DREWS, 2004 Female gametophyte development. Plant Cell 16(Suppl.): S133-S141.
82. YAMADA, K., J. LIM, J. M. DALE, H. CHEN, P. SHINN et al., 2003 Empirical analysis of transcriptional activity in the Arabidopsis genome. Science 302: 842-846. (Pubitemid 37339620)
83. YU, H. J., P. HOGAN and V. SUNDARESAN, 2005 Analysis of the female gametophyte transcriptome of Arabidopsis by comparative expression profiling. Plant Physiol. 139: 1853-1869.
84. ZHANG, J., and T. PETERSON, 2005 A segmental deletion series generated by sister-chromatid transposition of Ac transposable elements in maize. Genetics 171: 333-344.