-
2
-
-
2942718723
-
Control of stochasticity in eukaryotic gene expression
-
Raser J M and O'Shea E K 2004 Control of stochasticity in eukaryotic gene expression Science 304 1811-4
-
(2004)
Science
, vol.304
, Issue.5678
, pp. 1811-1814
-
-
Raser, J.M.1
O'Shea, E.K.2
-
3
-
-
34547604468
-
Noise in gene expression determines cell fate in Bacillus subtilis
-
Maamar H, Raj A and Dubnau D 2007 Noise in gene expression determines cell fate in Bacillus subtilis Science 317 526-9
-
(2007)
Science
, vol.317
, Issue.5837
, pp. 526-529
-
-
Maamar, H.1
Raj, A.2
Dubnau, D.3
-
4
-
-
0034212551
-
Engineering stability in gene network by autoregulation
-
Becskei A and Serrano L 2000 Engineering stability in gene network by autoregulation Nature 405 590-3
-
(2000)
Nature
, vol.405
, Issue.6786
, pp. 590-593
-
-
Becskei, A.1
Serrano, L.2
-
6
-
-
0842285841
-
Summing up the noise in gene networks
-
Paulsson J 2004 Summing up the noise in gene networks Nature 427 415-8
-
(2004)
Nature
, vol.427
, Issue.6973
, pp. 415-418
-
-
Paulsson, J.1
-
7
-
-
38349185928
-
Effects of molecular memory and bursting on fluctuations in gene expression
-
Pedraza J M and Paulsson J 2008 Effects of molecular memory and bursting on fluctuations in gene expression Science 319 339-43
-
(2008)
Science
, vol.319
, Issue.5861
, pp. 339-343
-
-
Pedraza, J.M.1
Paulsson, J.2
-
8
-
-
33746869356
-
Signal detection, modularity, and the correlation between extrinsic and intrinsic noise in biochemical networks
-
Tnase-Nicola S, Warren P B and ten Wolde P R 2006 Signal detection, modularity, and the correlation between extrinsic and intrinsic noise in biochemical networks Phys. Rev. Lett. 97 068102
-
(2006)
Phys. Rev. Lett.
, vol.97
, Issue.6
, pp. 068102
-
-
Tnase-Nicola, S.1
Warren, P.B.2
Ten Wolde, P.R.3
-
9
-
-
34547177356
-
Stochastic fluctuations in metabolic pathways
-
Levine E and Hwa T 2007 Stochastic fluctuations in metabolic pathways Proc. Natl Acad. Sci. USA 104 9221-9
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, Issue.22
, pp. 9224-9229
-
-
Levine, E.1
Hwa, T.2
-
11
-
-
77249167474
-
Exactly solvable models for many-body systems far from equilibrium
-
Schütz G M 2000 exactly solvable models for many-body systems far from equilibrium Phase Transitions and Critical Phenomena vol 19 ed C Domb and J Lebowitz (London: Academic) pp 1-251
-
(2000)
Phase Transitions and Critical Phenomena
, vol.19
, pp. 1-251
-
-
Schütz, G.M.1
-
12
-
-
67649880601
-
Adiabatic coarse-graining and simulations of stochastic biochemical networks
-
Sinitsyn N A, Hengartner N and Nemenman I 2009 Adiabatic coarse-graining and simulations of stochastic biochemical networks Proc. Natl Acad. Sci. USA 106 10546-51
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, Issue.26
, pp. 10546-10551
-
-
Sinitsyn, N.A.1
Hengartner, N.2
Nemenman, I.3
-
13
-
-
19544379881
-
Stochasticity in gene expression: From theories to phenotypes
-
Kærn M, Elston T C, Blake W J and Collins J J 2005 Stochasticity in gene expression: from theories to phenotypes Nat. Rev. Genet. 6 451-64
-
(2005)
Nat. Rev. Genet.
, vol.6
, Issue.6
, pp. 451-464
-
-
Kærn, M.1
Elston, T.C.2
Blake, W.J.3
Collins, J.J.4
-
14
-
-
38349064976
-
Mechanisms and functions of endocytosis
-
Miaczynska M and Stenmark H 2008 Mechanisms and functions of endocytosis J. Cell Biol. 180 7-11
-
(2008)
J. Cell Biol.
, vol.180
, Issue.1
, pp. 7-11
-
-
Miaczynska, M.1
Stenmark, H.2
-
15
-
-
33748994704
-
Stochastic mRNA synthesis in mammalian cells
-
Raj A, Peskin C S, Tranchina D, Vargas D Y and Tyagi S 2006 Stochastic mRNA synthesis in mammalian cells PLoS Biol. 4 e309
-
(2006)
PLoS Biol.
, vol.4
, Issue.10
, pp. 309
-
-
Raj, A.1
Peskin, C.S.2
Tranchina, D.3
Vargas, D.Y.4
Tyagi, S.5
-
16
-
-
16644373292
-
Noise minimization in eukaryotic gene expression
-
Fraser H B, Hirsh A E, Giaever G, Kumm J and Eisen M B 2004 Noise minimization in eukaryotic gene expression PLoS Biol. 2 e137
-
(2004)
PLoS Biol.
, vol.2
, Issue.6
, pp. 137
-
-
Fraser, H.B.1
Hirsh, A.E.2
Giaever, G.3
Kumm, J.4
Eisen, M.B.5
-
17
-
-
0036784630
-
In vivo kinetics of mRNA splicing and transport in mammalian cells
-
Audibert A, Weil D and Dautry F 2002 In vivo kinetics of mRNA splicing and transport in mammalian cells Mol. Cell Biol. 22 6706-18
-
(2002)
Mol. Cell Biol.
, vol.22
, Issue.19
, pp. 6706-6718
-
-
Audibert, A.1
Weil, D.2
Dautry, F.3
-
18
-
-
0037206807
-
Signal processing by simple chemical systems
-
Samoilov M, Arkin A and Ross J 2002 Signal processing by simple chemical systems J. Phys. Chem. A 106 10205-21
-
(2002)
J. Phys. Chem.
, vol.106
, Issue.43
, pp. 10205-10221
-
-
Samoilov, M.1
Arkin, A.2
Ross, J.3
-
19
-
-
42549099171
-
Optimal signal processing in small stochastic biochemical networks
-
Ziv E, Nemenman I and Wiggins C H 2007 Optimal signal processing in small stochastic biochemical networks PLoS ONE 2 e1077
-
(2007)
PLoS ONE
, vol.2
, Issue.10
, pp. 1077
-
-
Ziv, E.1
Nemenman, I.2
Wiggins, C.H.3
-
20
-
-
0037154982
-
A unified theory of gene expression
-
Orphanides G and Reinberg D 2002 A unified theory of gene expression Cell 108 439-51
-
(2002)
Cell
, vol.108
, Issue.4
, pp. 439-451
-
-
Orphanides, G.1
Reinberg, D.2
-
21
-
-
0036512117
-
Messenger-RNA-binding proteins and the messages they carry
-
Dreyfuss G, Kim V N and Kataoka N 2002 Messenger-RNA-binding proteins and the messages they carry Nat. Rev. Mol. Cell Biol. 3 195-205
-
(2002)
Nat. Rev. Mol. Cell Biol.
, vol.3
, Issue.3
, pp. 195-205
-
-
Dreyfuss, G.1
Kim, V.N.2
Kataoka, N.3
-
22
-
-
2942733310
-
Dynamics of single mRNPs in nuclei of living cells
-
DOI 10.1126/science.1099754
-
Shav-Tal Y, Darzacq X, Shenoy S M, Fusco D, Janicki S M, Spector D L and Singer R H 2004 Dynamics of single mRNPs in nuclei of living cells Science 304 1797-800 (Pubitemid 38787895)
-
(2004)
Science
, vol.304
, Issue.5678
, pp. 1797-1800
-
-
Shav-Tal, Y.1
Darzacq, X.2
Shenoy, S.M.3
Fusco, D.4
Janicki, S.M.5
Spector, D.L.6
Singer, R.H.7
-
23
-
-
28044451048
-
Mechanism of mRNA transport in the nucleus
-
Vargas D Y, Raj A, Marras S A E, Kramer F R and Tyagi S 2005 Mechanism of mRNA transport in the nucleus Proc. Natl Acad. Sci. USA 102 17008-13
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, Issue.47
, pp. 17008-17013
-
-
Vargas, D.Y.1
Raj, A.2
Marras, S.A.E.3
Kramer, F.R.4
Tyagi, S.5
-
24
-
-
33646513494
-
The road much traveled: Trafficking in the cell nucleus
-
Gorski S A, Dundr M and Misteli T 2006 The road much traveled: trafficking in the cell nucleus Curr. Opin. Cell Biol. 18 284-90
-
(2006)
Curr. Opin. Cell Biol.
, vol.18
, Issue.3
, pp. 284-290
-
-
Gorski, S.A.1
Dundr, M.2
Misteli, T.3
-
25
-
-
0031954020
-
Transport of macromolecules between the nucleus and the cytoplasm
-
Izaurralde E and Adam S 1998 Transport of macromolecules between the nucleus and the cytoplasm RNA 4 351-64
-
(1998)
RNA
, vol.4
, pp. 351-364
-
-
Izaurralde, E.1
Adam, S.2
-
26
-
-
33646516400
-
Transport of messenger RNA from the nucleus to the cytoplasm
-
Cole C N and Scarcelli J J 2006 Transport of messenger RNA from the nucleus to the cytoplasm Curr. Opin. Cell Biol. 18 299-306
-
(2006)
Curr. Opin. Cell Biol.
, vol.18
, Issue.3
, pp. 299-306
-
-
Cole, C.N.1
Scarcelli, J.J.2
-
27
-
-
33846702294
-
Ratcheting mRNA out of the nucleus
-
Stewart M 2007 Ratcheting mRNA out of the nucleus Mol. Cell 25 327-30
-
(2007)
Mol. Cell
, vol.25
, Issue.3
, pp. 327-330
-
-
Stewart, M.1
-
28
-
-
34250777112
-
The nuclear envelope and transcriptional control
-
Akhtar A and Gasser S M 2007 The nuclear envelope and transcriptional control Nat. Rev. Genet. 8 507-17
-
(2007)
Nat. Rev. Genet.
, vol.8
, Issue.7
, pp. 507-517
-
-
Akhtar, A.1
Gasser, S.M.2
-
29
-
-
0037041784
-
Effect of binding on particle number fluctuations in a membrane channel
-
Berezhkovskii A M, Pustovoit M A and Bezrukov S M 2002 Effect of binding on particle number fluctuations in a membrane channel J. Chem. Phys. 116 6216-20
-
(2002)
J. Chem. Phys.
, vol.116
, Issue.14
, pp. 6216-6220
-
-
Berezhkovskii, A.M.1
Pustovoit, M.A.2
Bezrukov, S.M.3
-
30
-
-
34547597611
-
Efficiency, selectivity, and robustness of nucleocytoplasmic transport
-
Zilman A, Talia S D, Chait B T, Rout M P and Magnasco M O 2007 Efficiency, selectivity, and robustness of nucleocytoplasmic transport PLoS Comput. Biol. 3 e125
-
(2007)
PLoS Comput. Biol.
, vol.3
, Issue.7
, pp. 125
-
-
Zilman, A.1
Talia, S.D.2
Chait, B.T.3
Rout, M.P.4
Magnasco, M.O.5
-
31
-
-
38549164168
-
Counting translocations of strongly repelling particles through single channels: Fluctuation theorem for membrane transport
-
Berezhkovskii A M and Bezrukov S M 2008 Counting translocations of strongly repelling particles through single channels: fluctuation theorem for membrane transport Phys. Rev. Lett. 100 038104
-
(2008)
Phys. Rev. Lett.
, vol.100
, Issue.3
, pp. 038104
-
-
Berezhkovskii, A.M.1
Bezrukov, S.M.2
-
32
-
-
70349284544
-
Effects of jamming on nonequilibrium transport times in nanochannels
-
Zilman A, Pearson J and Bel G 2009 Effects of jamming on nonequilibrium transport times in nanochannels Phys. Rev. Lett. 103 128103
-
(2009)
Phys. Rev. Lett.
, vol.103
, Issue.12
, pp. 128103
-
-
Zilman, A.1
Pearson, J.2
Bel, G.3
-
33
-
-
60549102848
-
Artificial nanopores that mimic the transport selectivity of the nuclear pore complex
-
Jovanovic-Talisman T, Tetenbaum-Novatt J, McKenney A S, Zilman A, Peters R, Rout M P and Chait B T 2009 Artificial nanopores that mimic the transport selectivity of the nuclear pore complex Nature 457 1023-7
-
(2009)
Nature
, vol.457
, Issue.7232
, pp. 1023-1027
-
-
Jovanovic-Talisman, T.1
Tetenbaum-Novatt, J.2
McKenney, A.S.3
Zilman, A.4
Peters, R.5
Rout, M.P.6
Chait, B.T.7
-
35
-
-
42449140138
-
Transcriptional control of noise in gene expression
-
Snchez and Kondev J 2008 Transcriptional control of noise in gene expression Proc. Natl Acad. Sci. USA 105 5081-6
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, Issue.13
, pp. 5081-5086
-
-
Snchez1
Kondev, J.2
-
36
-
-
70349559073
-
Mesoscopic statistical properties of multistep enzyme-mediated reactions
-
de Ronde W H, Daniels B C, Mugler A, Sinitsyn N A and Nemenman I 2009 Mesoscopic statistical properties of multistep enzyme-mediated reactions IET Syst. Biol. 3 429-37
-
(2009)
IET Syst. Biol.
, vol.3
, Issue.5
, pp. 429-437
-
-
De Ronde, W.H.1
Daniels, B.C.2
Mugler, A.3
Sinitsyn, N.A.4
Nemenman, I.5
-
37
-
-
0034691214
-
Stochastic focusing: Fluctuation-enhanced sensitivity of intracellular regulation
-
Paulsson J, Berg O G and Ehrenberg M 2000 Stochastic focusing: fluctuation-enhanced sensitivity of intracellular regulation Proc. Natl Acad. Sci. USA 97 7148-53
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, Issue.13
, pp. 7148-7153
-
-
Paulsson, J.1
Berg, O.G.2
Ehrenberg, M.3
-
38
-
-
0034608143
-
Random signal fluctuations can reduce random fluctuations in regulated components of chemical regulatory networks
-
Paulsson J and Ehrenberg M 2000 Random signal fluctuations can reduce random fluctuations in regulated components of chemical regulatory networks Phys. Rev. Lett. 84 5447-50
-
(2000)
Phys. Rev. Lett.
, vol.84
, Issue.23
, pp. 5447-5450
-
-
Paulsson, J.1
Ehrenberg, M.2
-
39
-
-
0036578645
-
Regulation of noise in the expression of a single gene
-
Ozbudak E M, Thattai M, Kurtser I, Grossman A D and van Oudenaarden A 2002 Regulation of noise in the expression of a single gene Nature Genet. 31 69-73
-
(2002)
Nature Genet.
, vol.31
, Issue.1
, pp. 69-73
-
-
Ozbudak, E.M.1
Thattai, M.2
Kurtser, I.3
Grossman, A.D.4
Van Oudenaarden, A.5
-
40
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie D T 1977 Exact stochastic simulation of coupled chemical reactions J. Phys. Chem. 81 2340-61
-
(1977)
J. Phys. Chem.
, vol.81
, Issue.25
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
42
-
-
33745287724
-
Noise in protein expression scales with natural protein abundance
-
Bar-Even A, Paulsson J, Maheshri N, Carmi M, O'Shea E, Pilpel Y and Barkai N 2006 Noise in protein expression scales with natural protein abundance Nat. Genet. 38 636-43
-
(2006)
Nat. Genet.
, vol.38
, Issue.6
, pp. 636-643
-
-
Bar-Even, A.1
Paulsson, J.2
Maheshri, N.3
Carmi, M.4
O'Shea, E.5
Pilpel, Y.6
Barkai, N.7
-
43
-
-
0242490781
-
Fast evaluation of fluctuations in biochemical networks with the linear noise approximation
-
Elf J and Ehrenberg M 2003 Fast evaluation of fluctuations in biochemical networks with the linear noise approximation Genome Res. 13 2475-84
-
(2003)
Genome Res.
, vol.13
, Issue.11
, pp. 2475-2484
-
-
Elf, J.1
Ehrenberg, M.2
|