메뉴 건너뛰기




Volumn 26, Issue 1, 2009, Pages 104-110

Simulation-based model selection for dynamical systems in systems and population biology

Author keywords

[No Author keywords available]

Indexed keywords


EID: 75249088572     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp619     Document Type: Article
Times cited : (202)

References (40)
  • 1
    • 0026055447 scopus 로고
    • A generalized stochastic model for the analysis of infectious disease final size data
    • Addy, C. Jr, et al. (1991) A generalized stochastic model for the analysis of infectious disease final size data. Biometrics, 47, 961-974.
    • (1991) Biometrics , vol.47 , pp. 961-974
    • Addy, C.Jr.1
  • 2
    • 33746826011 scopus 로고    scopus 로고
    • JAK/STAT signalling in drosophila: insights into conserved regulatory and cellular functions
    • Arbouzova, N.I. and Zeidler, M.P. (2006) JAK/STAT signalling in drosophila: insights into conserved regulatory and cellular functions. Development, 133, 2605-2616.
    • (2006) Development , vol.133 , pp. 2605-2616
    • Arbouzova, N.I.1    Zeidler, M.P.2
  • 3
    • 0036964474 scopus 로고    scopus 로고
    • Approximate Bayesian computation in population genetics
    • Beaumont, M.A. et al. (2002) Approximate Bayesian computation in population genetics. Genetics, 162, 2025-2035.
    • (2002) Genetics , vol.162 , pp. 2025-2035
    • Beaumont, M.A.1
  • 4
    • 73549122582 scopus 로고    scopus 로고
    • Non-linear regression models for approximate Bayesian computation
    • [Epub ahead of print, doi:10.1007/s11222-009-9116-0]
    • Blum, M.G. and François, O. (2009) Non-linear regression models for approximate Bayesian computation. Stat. Comput., [Epub ahead of print, doi:10.1007/s11222-009-9116-0].
    • (2009) Stat. Comput.
    • Blum, M.G.1    François, O.2
  • 6
    • 58549083142 scopus 로고    scopus 로고
    • Input-output behavior of ErbB signaling pathways as revealed by a mass action model trained against dynamic data
    • Chen, W.W. et al. (2009) Input-output behavior of ErbB signaling pathways as revealed by a mass action model trained against dynamic data. Mol. Syst. Biol., 5, 239.
    • (2009) Mol. Syst. Biol. , vol.5 , pp. 239
    • Chen, W.W.1
  • 7
    • 34547321913 scopus 로고    scopus 로고
    • Exact Bayesian inference and model selection for stochastic models of epidemics among a community of households
    • Clancy, D. and O'Neill, P.D. (2007) Exact Bayesian inference and model selection for stochastic models of epidemics among a community of households. Scand. J. Stat., 34, 259-274.
    • (2007) Scand. J. Stat. , vol.34 , pp. 259-274
    • Clancy, D.1    O'Neill, P.D.2
  • 8
    • 0030840464 scopus 로고    scopus 로고
    • STATs and gene regulation
    • Darnell, J.E. (1997) STATs and gene regulation. Science, 277, 1630-1635.
    • (1997) Science , vol.277 , pp. 1630-1635
    • Darnell, J.E.1
  • 9
    • 75249101550 scopus 로고    scopus 로고
    • An adaptive sequential Monte Carlo method for approximate Bayesian computation
    • Imperial College Technical Report
    • Del Moral, P. et al. (2009) An adaptive sequential Monte Carlo method for approximate Bayesian computation. Imperial College Technical Report.
    • (2009)
    • Del Moral, P.1
  • 10
    • 0030579560 scopus 로고    scopus 로고
    • Prionics or the kinetic basis of prion diseases
    • Eigen, M. (1996) Prionics or the kinetic basis of prion diseases. Biophys. Chem., 63, A1-A18.
    • (1996) Biophys. Chem. , vol.63
    • Eigen, M.1
  • 11
    • 77954027774 scopus 로고    scopus 로고
    • Bayesian computation and model selection in population genetics
    • arXiv:0901.2231v1 [stat.ME]
    • Excoffier, C.L.D.W.L. (2009) Bayesian computation and model selection in population genetics. arXiv:0901.2231v1 [stat.ME].
    • (2009)
    • Excoffier, C.L.D.W.L.1
  • 12
    • 0004012196 scopus 로고    scopus 로고
    • 2nd edn. Chapman & Hall/CRC, London
    • Gelman, A. et al. (2003) Bayesian Data Analysis, 2nd edn. Chapman & Hall/CRC, London.
    • (2003) Bayesian Data Analysis
    • Gelman, A.1
  • 13
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie, D. (1977) Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem., 81, 2340-2361.
    • (1977) J. Phys. Chem. , vol.81 , pp. 2340-2361
    • Gillespie, D.1
  • 14
    • 75249099118 scopus 로고    scopus 로고
    • ABC likelihood-free methods for model choice in Gibbs random fields
    • Grelaud, A. et al. (2009) ABC likelihood-free methods for model choice in Gibbs random fields. Bayesian Anal., 4, 317-336.
    • (2009) Bayesian Anal. , vol.4 , pp. 317-336
    • Grelaud, A.1
  • 15
    • 35748977901 scopus 로고    scopus 로고
    • Universally sloppy parameter sensitivities in systems biology models
    • Gutenkunst, R. et al. (2007) Universally sloppy parameter sensitivities in systems biology models. PLoS Comput. Biol., 3, e189.
    • (2007) PLoS Comput. Biol. , vol.3
    • Gutenkunst, R.1
  • 16
    • 0034306290 scopus 로고    scopus 로고
    • STAT proteins and transcriptional responses to extracellular signals
    • Horvath, C.M. (2000) STAT proteins and transcriptional responses to extracellular signals. Trends Biochem. Sci., 25, 496-502.
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 496-502
    • Horvath, C.M.1
  • 17
  • 19
    • 0000413462 scopus 로고    scopus 로고
    • Regulation of interferon-gamma-activated STAT1 by the ubiquitin-proteasome pathway
    • Kim, T.K. and Maniatis, T. (1996) Regulation of interferon-gamma-activated STAT1 by the ubiquitin-proteasome pathway. Science, 273, 1717-1719.
    • (1996) Science , vol.273 , pp. 1717-1719
    • Kim, T.K.1    Maniatis, T.2
  • 20
    • 47749140357 scopus 로고    scopus 로고
    • Parameter inference for biochemical systems that undergo a Hopf bifurcation
    • Kirk, P.D.W. et al. (2008) Parameter inference for biochemical systems that undergo a Hopf bifurcation. Biophys. J., 95, 540-549.
    • (2008) Biophys. J. , vol.95 , pp. 540-549
    • Kirk, P.D.W.1
  • 21
    • 0029738317 scopus 로고    scopus 로고
    • Multiple tyrosine residues in the cytosolic domain of the erythropoietin receptor promote activation of STAT5
    • Klingmüller, U. et al. (1996) Multiple tyrosine residues in the cytosolic domain of the erythropoietin receptor promote activation of STAT5. Proc. Natl Acad. Sci. USA, 93, 8324-8328.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 8324-8328
    • Klingmüller, U.1
  • 22
    • 0033558170 scopus 로고    scopus 로고
    • Dynamic redistribution of STAT1 protein in IFN signaling visualized by GFP fusion proteins
    • Köster, M. and Hauser, H. (1999) Dynamic redistribution of STAT1 protein in IFN signaling visualized by GFP fusion proteins. Eur. J. Biochem., 260, 137-144.
    • (1999) Eur. J. Biochem. , vol.260 , pp. 137-144
    • Köster, M.1    Hauser, H.2
  • 23
    • 0019899273 scopus 로고
    • Household and community transmission parameters from final distributions of infections in households
    • Longini, I.L. Jr. and Koopman, J. (1982) Household and community transmission parameters from final distributions of infections in households. Biometrics, 38, 115-126.
    • (1982) Biometrics , vol.38 , pp. 115-126
    • Longini I.L., Jr.1    Koopman, J.2
  • 24
    • 0346734143 scopus 로고    scopus 로고
    • Markov chain Monte Carlo without likelihoods
    • Marjoram, P. et al. (2003) Markov chain Monte Carlo without likelihoods. Proc. Natl Acad. Sci. USA, 100, 15324-15328.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 15324-15328
    • Marjoram, P.1
  • 25
    • 0842309879 scopus 로고    scopus 로고
    • Uses and abuses of mathematics in biology
    • May, R.M. (2004) Uses and abuses of mathematics in biology. Science, 303, 790-793.
    • (2004) Science , vol.303 , pp. 790-793
    • May, R.M.1
  • 27
    • 4644314875 scopus 로고    scopus 로고
    • Tests for cycling in a signalling pathway
    • Müller, T.G. et al. (2004) Tests for cycling in a signalling pathway. J.R. Stat. Soc. Ser. C, 53, 557.
    • (2004) J. R. Stat. Soc. Ser. C , vol.53 , pp. 557
    • Müller, T.G.1
  • 28
    • 0034354606 scopus 로고    scopus 로고
    • Analyses of infectious disease data from household outbreaks by Markov chain Monte Carlo methods
    • O'Neill, P. et al. (2000) Analyses of infectious disease data from household outbreaks by Markov chain Monte Carlo methods. Appl. Stat., 49, 517-542.
    • (2000) Appl. Stat. , vol.49 , pp. 517-542
    • O'Neill, P.1
  • 29
    • 0020321767 scopus 로고
    • Novel proteinaceous infectious particles cause scrapie
    • Prusiner, S.B. (1982) Novel proteinaceous infectious particles cause scrapie. Science, 216, 136-144.
    • (1982) Science , vol.216 , pp. 136-144
    • Prusiner, S.B.1
  • 30
    • 36949017519 scopus 로고    scopus 로고
    • Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum.
    • Ratmann, O. et al. (2007) Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum. PLoS Comput. Biol., 3, 2266-2278.
    • (2007) PLoS Comput. Biol. , vol.3 , pp. 2266-2278
    • Ratmann, O.1
  • 31
    • 67649819681 scopus 로고    scopus 로고
    • Model criticism based on likelihood-free inference, with an application to protein network evolution
    • Ratmann, O. et al. (2009) Model criticism based on likelihood-free inference, with an application to protein network evolution. Proc. Natl Acad. Sci. USA, 106, 10576-10581.
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 10576-10581
    • Ratmann, O.1
  • 32
    • 72949108893 scopus 로고    scopus 로고
    • The ABC of reverse engineering biological signalling systems
    • Secrier, M. et al. (2009) The ABC of reverse engineering biological signalling systems. Mol. BioSyst. 5, 1925-1935.
    • (2009) Mol. BioSyst. , vol.5 , pp. 1925-1935
    • Secrier, M.1
  • 33
    • 33846939958 scopus 로고    scopus 로고
    • Sequential Monte Carlo without likelihoods
    • Sisson, S.A. et al. (2007) Sequential Monte Carlo without likelihoods. Proc. Natl Acad. Sci. USA, 104, 1760-1765.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 1760-1765
    • Sisson, S.A.1
  • 34
    • 0037417886 scopus 로고    scopus 로고
    • Identification of nucleocytoplasmic cycling as a remote sensor in cellular signaling by databased modeling
    • Swameye, I. et al. (2003) Identification of nucleocytoplasmic cycling as a remote sensor in cellular signaling by databased modeling. Proc. Natl Acad. Sci. USA, 100, 1028-1033.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 1028-1033
    • Swameye, I.1
  • 35
    • 13844298920 scopus 로고    scopus 로고
    • Modeling the nonlinear dynamics of cellular signal transduction
    • Timmer, J. and Müller, T. (2004) Modeling the nonlinear dynamics of cellular signal transduction. Int. J. Bifurcat. Chaos, 14, 2069-2079.
    • (2004) Int. J. Bifurcat. Chaos , vol.14 , pp. 2069-2079
    • Timmer, J.1    Müller, T.2
  • 36
    • 58149142997 scopus 로고    scopus 로고
    • Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems
    • Toni, T. et al. (2009) Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems. J.R. Soc. Interface, 6, 187-202.
    • (2009) J. R. Soc. Interface , vol.6 , pp. 187-202
    • Toni, T.1
  • 37
    • 40749094910 scopus 로고    scopus 로고
    • Bayesian ranking of biochemical system models
    • Vyshemirsky, V. and Girolami, M.A. (2008) Bayesian ranking of biochemical system models. Bioinformatics, 24, 833-839.
    • (2008) Bioinformatics , vol.24 , pp. 833-839
    • Vyshemirsky, V.1    Girolami, M.A.2
  • 38
    • 34547844074 scopus 로고    scopus 로고
    • A Markov random field model for network-based analysis of genomic data
    • Wei, Z. and Li, H. (2007) A Markov random field model for network-based analysis of genomic data. Bioinformatics, 23, 1537-1544.
    • (2007) Bioinformatics , vol.23 , pp. 1537-1544
    • Wei, Z.1    Li, H.2
  • 40
    • 33750415038 scopus 로고    scopus 로고
    • SBML-PET: a Systems Biology Markup Language-based parameter estimation tool
    • Zi, Z. and Klipp, E. (2006) SBML-PET: a Systems Biology Markup Language-based parameter estimation tool. Bioinformatics, 22, 2704-2705.
    • (2006) Bioinformatics , vol.22 , pp. 2704-2705
    • Zi, Z.1    Klipp, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.