메뉴 건너뛰기




Volumn 22, Issue 21, 2006, Pages 2704-2705

SBML-PET: A Systems Biology Markup Language-based parameter estimation tool

Author keywords

[No Author keywords available]

Indexed keywords

JANUS KINASE; PROTEINASE; STAT PROTEIN; TRYPTOPHAN;

EID: 33750415038     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl443     Document Type: Article
Times cited : (60)

References (17)
  • 1
    • 0001811061 scopus 로고
    • ODEPACK, a systematized collection of ODE solvers
    • In Stepleman,R.S., Carver,M., Peskin,R., Ames,W.F. and Vichnevetsky,R. (eds), Amsterdam, North-Holland Publishing Co
    • Hindmarsh,A.C. (1983) ODEPACK, a systematized collection of ODE solvers. In Stepleman,R.S., Carver,M., Peskin,R., Ames,W.F. and Vichnevetsky,R. (eds), Scientific Computing, Amsterdam, North-Holland Publishing Co., 55-64.
    • (1983) Scientific Computing , pp. 55-64
    • Hindmarsh, A.C.1
  • 2
    • 20144389891 scopus 로고    scopus 로고
    • Grid cellware: The first grid-enabled tool for modelling and simulating cellular processes
    • Dhar,P.K. et al. (2005) Grid cellware: The first grid-enabled tool for modelling and simulating cellular processes. Bioinformatics, 21, 1284-1287.
    • (2005) Bioinformatics , vol.21 , pp. 1284-1287
    • Dhar, P.K.1
  • 3
    • 25444510601 scopus 로고    scopus 로고
    • Iterative approach to model identification of biological networks
    • Gadkar,K.G. et al. (2005) Iterative approach to model identification of biological networks. BMC Bioinformatics, 6, 155.
    • (2005) BMC Bioinformatics , vol.6 , pp. 155
    • Gadkar, K.G.1
  • 4
    • 30344470205 scopus 로고    scopus 로고
    • libSRES: A C library for stochastic ranking evolution strategy for parameter estimation
    • Ji,X. and Xu,Y. (2006) libSRES: A C library for stochastic ranking evolution strategy for parameter estimation. Bioinformatics, 22, 124-126.
    • (2006) Bioinformatics , vol.22 , pp. 124-126
    • Ji, X.1    Xu, Y.2
  • 5
    • 3543148257 scopus 로고    scopus 로고
    • OBIYagns: A grid-based biochemical simulator with a parameter estimator
    • Kimura,S. et al. (2004) OBIYagns: A grid-based biochemical simulator with a parameter estimator. Bioinformatics, 20, 1646-1648.
    • (2004) Bioinformatics , vol.20 , pp. 1646-1648
    • Kimura, S.1
  • 6
    • 0028566137 scopus 로고
    • Evolutionary optimization of enzyme kinetic parameters; effect of constraints
    • Klipp,E. and Heinrich,R. (1994) Evolutionary optimization of enzyme kinetic parameters; effect of constraints. J. Theor. Biol., 171, 309-323.
    • (1994) J. Theor. Biol. , vol.171 , pp. 309-323
    • Klipp, E.1    Heinrich, R.2
  • 7
    • 4644301730 scopus 로고    scopus 로고
    • A benchmark for methods in reverse engineering and model discrimination: Problem formulation and solutions
    • Kremling,A. et al. (2004) A benchmark for methods in reverse engineering and model discrimination: Problem formulation and solutions. Genome Res., 14, 1773-1785.
    • (2004) Genome Res. , vol.14 , pp. 1773-1785
    • Kremling, A.1
  • 8
    • 33847229856 scopus 로고    scopus 로고
    • Parameter estimation for stiff equations of biosystems using radial basis function networks
    • Matsubara,Y. et al. (2006) Parameter estimation for stiff equations of biosystems using radial basis function networks. BMC Bioinformatics, 7, 230.
    • (2006) BMC Bioinformatics , vol.7 , pp. 230
    • Matsubara, Y.1
  • 9
    • 0027370376 scopus 로고
    • Gepasi - A software package for modeling the dynamics, steady-states and control of biochemical and other systems
    • Mendes,P. (1993) Gepasi - a software package for modeling the dynamics, steady-states and control of biochemical and other systems. Comput. Appl. Biosci., 9, 563-571.
    • (1993) Comput. Appl. Biosci. , vol.9 , pp. 563-571
    • Mendes, P.1
  • 10
    • 0032406131 scopus 로고    scopus 로고
    • Non-linear optimization of biochemical pathways: Applications to metabolic engineering and parameter estimation
    • Mendes,P. and Kell,D. (1998) Non-linear optimization of biochemical pathways: Applications to metabolic engineering and parameter estimation. Bioinformatics, 14, 869-883.
    • (1998) Bioinformatics , vol.14 , pp. 869-883
    • Mendes, P.1    Kell, D.2
  • 11
    • 0242574982 scopus 로고    scopus 로고
    • Parameter estimation in biochemical pathways: A comparison of global optimization methods
    • Moles,C.G. et al. (2003) Parameter estimation in biochemical pathways: A comparison of global optimization methods. Genome Res., 13, 2467-2474.
    • (2003) Genome Res. , vol.13 , pp. 2467-2474
    • Moles, C.G.1
  • 12
    • 0029902679 scopus 로고    scopus 로고
    • Program dynafit for the analysis of enzyme kinetic data: Application to hiv proteinase
    • Petr,K. (1996) Program dynafit for the analysis of enzyme kinetic data: Application to hiv proteinase. Analytical Biochemistry, 237, 260-273.
    • (1996) Analytical Biochemistry , vol.237 , pp. 260-273
    • Petr, K.1
  • 13
    • 0034266683 scopus 로고    scopus 로고
    • Stochastic ranking for constrained evolutionary optimization
    • Runarsson,T.P. and Yao,X. (2000) Stochastic ranking for constrained evolutionary optimization. IEEE Trans. Evol. Comput., 4, 284-294.
    • (2000) IEEE Trans. Evol. Comput. , vol.4 , pp. 284-294
    • Runarsson, T.P.1    Yao, X.2
  • 14
    • 0037974422 scopus 로고    scopus 로고
    • Dynamic model of Escherichia coli tryptophan operon shows an optimal structural design
    • Sharad,B. et al. (2003) Dynamic model of Escherichia coli tryptophan operon shows an optimal structural design. Eur. J. Biochem., 270, 2644-2651.
    • (2003) Eur. J. Biochem. , vol.270 , pp. 2644-2651
    • Sharad, B.1
  • 15
    • 0037417886 scopus 로고    scopus 로고
    • Identification of nucleocytoplasmic cycling as a remote sensor in cellular signaling by databased modeling
    • Swameye,I. et al. (2003) Identification of nucleocytoplasmic cycling as a remote sensor in cellular signaling by databased modeling. Proc. Natl Acad. Sci. USA, 100, 1028-1033.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 1028-1033
    • Swameye, I.1
  • 16
    • 16344385431 scopus 로고    scopus 로고
    • Evolutionary optimization with data collocation for reverse engineering of biological networks
    • Tsai,K.Y. and Wang,F.S. (2005) Evolutionary optimization with data collocation for reverse engineering of biological networks. Bioinformatics, 21, 1180-1188.
    • (2005) Bioinformatics , vol.21 , pp. 1180-1188
    • Tsai, K.Y.1    Wang, F.S.2
  • 17
    • 0242490789 scopus 로고    scopus 로고
    • Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: Insights from an identifiability analysis of an in silico network
    • Zak,D.E. et al. (2003) Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: Insights from an identifiability analysis of an in silico network. Genome Res., 13, 2396-2405.
    • (2003) Genome Res. , vol.13 , pp. 2396-2405
    • Zak, D.E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.