메뉴 건너뛰기




Volumn 28, Issue 6, 2010, Pages 513-523

Computer-aided drug design and ADMET predictions for identification and evaluation of novel potential farnesyltransferase inhibitors in cancer therapy

Author keywords

ADMET predictions; Cancer; Drug design; Farnesyltransferase; Virtual screening

Indexed keywords

ANTICANCER DRUG; CANCER DRUG; CANCER THERAPY; CLINICAL TESTS; COMPUTATIONAL METHODOLOGY; COMPUTER-AIDED DRUG DESIGN; DRUG CANDIDATES; FARNESYLTRANSFERASE; FTASE INHIBITORS; IDENTIFICATION AND EVALUATION; MOLECULAR INTERACTION FIELDS; POTENTIAL INHIBITORS; RESEARCH PROTOCOL; VIRTUAL SCREENING;

EID: 75049083127     PISSN: 10933263     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmgm.2009.11.011     Document Type: Article
Times cited : (32)

References (45)
  • 1
    • 0024376173 scopus 로고
    • Ras oncogenes in human cancer: a review
    • Bos J.L. Ras oncogenes in human cancer: a review. Cancer Res. 49 (1989) 4682-4689
    • (1989) Cancer Res. , vol.49 , pp. 4682-4689
    • Bos, J.L.1
  • 2
    • 2342591455 scopus 로고    scopus 로고
    • The discovery of receptor tyrosine kinases: targets for cancer therapy
    • Gschwind A., Fischer O.M., and Ullrich A. The discovery of receptor tyrosine kinases: targets for cancer therapy. Nat. Rev. Cancer 4 (2004) 361-370
    • (2004) Nat. Rev. Cancer , vol.4 , pp. 361-370
    • Gschwind, A.1    Fischer, O.M.2    Ullrich, A.3
  • 3
    • 0025194466 scopus 로고
    • Inhibition of purified p21ras farnesyl:protein transferase by Cys-AAX tetrapeptides
    • Reiss Y., Goldstein J.L., Seabra M.C., Casey P.J., and Brown M.S. Inhibition of purified p21ras farnesyl:protein transferase by Cys-AAX tetrapeptides. Cell 62 (1990) 81-88
    • (1990) Cell , vol.62 , pp. 81-88
    • Reiss, Y.1    Goldstein, J.L.2    Seabra, M.C.3    Casey, P.J.4    Brown, M.S.5
  • 4
    • 0027416643 scopus 로고
    • Purification of a mammalian protein geranylgeranyltransferase: formation and catalytic properties of an enzyme-geranylgeranyl diphosphate complex
    • Yokoyama K., and Gelb M.H. Purification of a mammalian protein geranylgeranyltransferase: formation and catalytic properties of an enzyme-geranylgeranyl diphosphate complex. J. Biol. Chem. 268 (1993) 4055-4060
    • (1993) J. Biol. Chem. , vol.268 , pp. 4055-4060
    • Yokoyama, K.1    Gelb, M.H.2
  • 5
    • 3142752754 scopus 로고    scopus 로고
    • The RAM1 gene encoding a protein-farnesyltransferase b-subunit homologue is essential in Cryptococcus neoformans
    • Vallim M.A., Fernandes L., and Alspaugh J.A. The RAM1 gene encoding a protein-farnesyltransferase b-subunit homologue is essential in Cryptococcus neoformans. Microbiology 150 (2004) 1925-1935
    • (2004) Microbiology , vol.150 , pp. 1925-1935
    • Vallim, M.A.1    Fernandes, L.2    Alspaugh, J.A.3
  • 6
    • 0030344706 scopus 로고    scopus 로고
    • Protein farnesyltransferase in plants: molecular characterization and involvement in cell cycle control
    • Qian D., Zhou D., Ju R., Cramer C.L., and Yang Z. Protein farnesyltransferase in plants: molecular characterization and involvement in cell cycle control. Plant Cell 8 (1996) 2381-2394
    • (1996) Plant Cell , vol.8 , pp. 2381-2394
    • Qian, D.1    Zhou, D.2    Ju, R.3    Cramer, C.L.4    Yang, Z.5
  • 7
    • 0034870820 scopus 로고    scopus 로고
    • Efficient prenylation by a plant geranylgeranyltransferase-I requires a functional CaaL box motif and a proximal polybasic domain
    • Caldelari D., Sternberg H., Rodriguez-Concepcion M., Gruissem W., and Yalovsky S. Efficient prenylation by a plant geranylgeranyltransferase-I requires a functional CaaL box motif and a proximal polybasic domain. Plant Physiol. 126 (2001) 1416-1429
    • (2001) Plant Physiol. , vol.126 , pp. 1416-1429
    • Caldelari, D.1    Sternberg, H.2    Rodriguez-Concepcion, M.3    Gruissem, W.4    Yalovsky, S.5
  • 9
    • 0037674454 scopus 로고    scopus 로고
    • An overview of farnesyltransferase inhibitors and their role in lung cancer therapy
    • Adjei A.A. An overview of farnesyltransferase inhibitors and their role in lung cancer therapy. Lung Cancer 41 Suppl. 1 (2003) S55-S62
    • (2003) Lung Cancer , vol.41 , Issue.SUPPL. 1
    • Adjei, A.A.1
  • 11
    • 30844467746 scopus 로고    scopus 로고
    • Thematic review series: lipid posttranslational modifications. Farnesyltransferase inhibitors
    • Basso A.D., Kirschmeier P., and Bishop W.R. Thematic review series: lipid posttranslational modifications. Farnesyltransferase inhibitors. J. Lipid Res. 47 (2006) 15-31
    • (2006) J. Lipid Res. , vol.47 , pp. 15-31
    • Basso, A.D.1    Kirschmeier, P.2    Bishop, W.R.3
  • 12
    • 0027301696 scopus 로고
    • Isoprenoid diphosphate utilization by recombinant human farnesyl:protein transferase: interactive binding between substrates and a preferred kinetic pathway
    • Pompliano D.L., Schaber M.D., Mosser S.D., Omer C.A., Shafer J.A., and Gibbs J.B. Isoprenoid diphosphate utilization by recombinant human farnesyl:protein transferase: interactive binding between substrates and a preferred kinetic pathway. Biochemistry 32 (1993) 8341-8347
    • (1993) Biochemistry , vol.32 , pp. 8341-8347
    • Pompliano, D.L.1    Schaber, M.D.2    Mosser, S.D.3    Omer, C.A.4    Shafer, J.A.5    Gibbs, J.B.6
  • 13
    • 0029007105 scopus 로고
    • Protein farnesyltransferase: kinetics of farnesyl pyrophosphate binding and product release
    • Furfine E.S., Leban J.J., Landavazo A., Moomaw J.F., and Casey P.J. Protein farnesyltransferase: kinetics of farnesyl pyrophosphate binding and product release. Biochemistry 34 (1995) 6857-6862
    • (1995) Biochemistry , vol.34 , pp. 6857-6862
    • Furfine, E.S.1    Leban, J.J.2    Landavazo, A.3    Moomaw, J.F.4    Casey, P.J.5
  • 14
    • 0030999833 scopus 로고    scopus 로고
    • Substrate binding is required for release of product from mammalian protein farnesyltransferase
    • Tschantz W.R., Furfine E.S., and Casey P.J. Substrate binding is required for release of product from mammalian protein farnesyltransferase. J. Biol. Chem. 272 (1997) 9989-9993
    • (1997) J. Biol. Chem. , vol.272 , pp. 9989-9993
    • Tschantz, W.R.1    Furfine, E.S.2    Casey, P.J.3
  • 15
    • 0035132538 scopus 로고    scopus 로고
    • Characterization of the antitumor effects of the selective farnesyl protein transferase inhibitor R115777 in vivo and in vitro
    • End D.W., Smets G., and Todd A.V. Characterization of the antitumor effects of the selective farnesyl protein transferase inhibitor R115777 in vivo and in vitro. Cancer Res. 61 (2001) 131-137
    • (2001) Cancer Res. , vol.61 , pp. 131-137
    • End, D.W.1    Smets, G.2    Todd, A.V.3
  • 16
    • 0036667388 scopus 로고    scopus 로고
    • Farnesyltransferase inhibitors: promises and realities
    • Cox A.D., and Der C.J. Farnesyltransferase inhibitors: promises and realities. Curr. Opin. Pharmacol. 2 (2002) 388-393
    • (2002) Curr. Opin. Pharmacol. , vol.2 , pp. 388-393
    • Cox, A.D.1    Der, C.J.2
  • 17
    • 23844505374 scopus 로고    scopus 로고
    • Farnesyltransferase inhibitors in myelodysplastic syndrome
    • Feldman E.J. Farnesyltransferase inhibitors in myelodysplastic syndrome. Curr. Hematol. Rep. 4 (2005) 186-190
    • (2005) Curr. Hematol. Rep. , vol.4 , pp. 186-190
    • Feldman, E.J.1
  • 18
    • 0034826412 scopus 로고    scopus 로고
    • Farnesyl protein transferase inhibition: a novel approach to anti-tumor therapy. The discovery and development of SCH 66336
    • Ganguly A.K., Doll R.J., and Girijavallabhan V.M. Farnesyl protein transferase inhibition: a novel approach to anti-tumor therapy. The discovery and development of SCH 66336. Curr. Med. Chem. 8 (2001) 1419-1436
    • (2001) Curr. Med. Chem. , vol.8 , pp. 1419-1436
    • Ganguly, A.K.1    Doll, R.J.2    Girijavallabhan, V.M.3
  • 20
    • 9944250487 scopus 로고    scopus 로고
    • Inhibitory effects of mevastatin and a geranylgeranyl transferase I inhibitor (GGTI-2166) on mononuclear osteoclast formation induced by receptor activator of NF kappa B ligand (RANKL) or tumor necrosis factor-alpha (TNF-alpha)
    • Woo J., Nakagawa T.H., Krecic A.M., Nagai K.A., Hamilton D., Sebti S.M., and Stern P.H. Inhibitory effects of mevastatin and a geranylgeranyl transferase I inhibitor (GGTI-2166) on mononuclear osteoclast formation induced by receptor activator of NF kappa B ligand (RANKL) or tumor necrosis factor-alpha (TNF-alpha). Biochem. Pharmacol. 69 (2005) 87-95
    • (2005) Biochem. Pharmacol. , vol.69 , pp. 87-95
    • Woo, J.1    Nakagawa, T.H.2    Krecic, A.M.3    Nagai, K.A.4    Hamilton, D.5    Sebti, S.M.6    Stern, P.H.7
  • 21
    • 0346125401 scopus 로고    scopus 로고
    • Blocked pathways: FTIs shut down oncogene signals
    • Sebti S.M. Blocked pathways: FTIs shut down oncogene signals. Oncologist 8 (2003) 30-38
    • (2003) Oncologist , vol.8 , pp. 30-38
    • Sebti, S.M.1
  • 22
    • 75049085448 scopus 로고    scopus 로고
    • State-of-the-art of computer-aided drug design: an overview
    • Taft C.A., and Silva C.H.T.P. (Eds), Research Signpost, Kerala (International Invited MiniReview: C.A. Taft, V.B. Silva, C.H.T.P. Silva, Topics in Computer-aided Drug Design, J. Pharm. Sci. 97 (2008) 1089-1098)
    • Taft C.A., and Silva C.H.T.P. State-of-the-art of computer-aided drug design: an overview. In: Taft C.A., and Silva C.H.T.P. (Eds). Current Methods in Medicinal Chemistry and Biological Physics vol. 2 (2007), Research Signpost, Kerala 1-32 (International Invited MiniReview: C.A. Taft, V.B. Silva, C.H.T.P. Silva, Topics in Computer-aided Drug Design, J. Pharm. Sci. 97 (2008) 1089-1098)
    • (2007) Current Methods in Medicinal Chemistry and Biological Physics , vol.2 , pp. 1-32
    • Taft, C.A.1    Silva, C.H.T.P.2
  • 23
    • 33748674624 scopus 로고    scopus 로고
    • Invited international review: cancer and aids: new trends in drug design and chemotherapy
    • and references therein
    • Taft C.A., and Silva C.H.T.P. Invited international review: cancer and aids: new trends in drug design and chemotherapy. Curr. Comput. Aided Drug Des. 2 (2006) 307-324 and references therein
    • (2006) Curr. Comput. Aided Drug Des. , vol.2 , pp. 307-324
    • Taft, C.A.1    Silva, C.H.T.P.2
  • 24
    • 41249099180 scopus 로고    scopus 로고
    • Use of virtual screening, flexible docking, and molecular interaction fields to design novel HMG-CoA reductase inhibitors for the treatment of hypercholesterolemia
    • Silva V.B., Taft C.A., and Silva C.H.T.P. Use of virtual screening, flexible docking, and molecular interaction fields to design novel HMG-CoA reductase inhibitors for the treatment of hypercholesterolemia. J. Phys. Chem. A 112 (2008) 2007-2011
    • (2008) J. Phys. Chem. A , vol.112 , pp. 2007-2011
    • Silva, V.B.1    Taft, C.A.2    Silva, C.H.T.P.3
  • 26
    • 70449704618 scopus 로고    scopus 로고
    • In silico search and toxicologic prediction of novel potential beta-secretase inhibitors in Alzheimer's disease
    • Silva V.B., Namba A.M., Pantalena D.G., Prado T.F., and Silva C.H.T.P. In silico search and toxicologic prediction of novel potential beta-secretase inhibitors in Alzheimer's disease. Curr. Bioact. Compd. 5 (2009) 119-127
    • (2009) Curr. Bioact. Compd. , vol.5 , pp. 119-127
    • Silva, V.B.1    Namba, A.M.2    Pantalena, D.G.3    Prado, T.F.4    Silva, C.H.T.P.5
  • 27
    • 70449725238 scopus 로고    scopus 로고
    • Virtual screening and toxicologic prediction of novel potential non-nucleoside HIV-1 reverse transcriptase inhibitors
    • Namba A.M., Silva V.B., Ramos T.M.B., Vermelho R.B., Baptista N.Z., and Silva C.H.T.P. Virtual screening and toxicologic prediction of novel potential non-nucleoside HIV-1 reverse transcriptase inhibitors. Curr. Bioact. Compd. 5 (2009) 128-136
    • (2009) Curr. Bioact. Compd. , vol.5 , pp. 128-136
    • Namba, A.M.1    Silva, V.B.2    Ramos, T.M.B.3    Vermelho, R.B.4    Baptista, N.Z.5    Silva, C.H.T.P.6
  • 28
    • 75049084311 scopus 로고    scopus 로고
    • Discovery Studio ViewerPro, version 5.0, 2002, Accelrys Inc, San Diego, CA
    • Discovery Studio ViewerPro, version 5.0, 2002, Accelrys Inc., San Diego, CA.
  • 30
    • 34447305996 scopus 로고    scopus 로고
    • Structure and reaction based evaluation of synthetic accessibility
    • Boda K., Seidel T., and Gasteiger J. Structure and reaction based evaluation of synthetic accessibility. J. Comput. Aided Mol. Des. 21 (2007) 311-325
    • (2007) J. Comput. Aided Mol. Des. , vol.21 , pp. 311-325
    • Boda, K.1    Seidel, T.2    Gasteiger, J.3
  • 33
    • 75049085910 scopus 로고    scopus 로고
    • Gaussian 03, M.J. Frisch, G. W. Trucks, H.B. Schlegel, G.E. Scuseria, M.A. Robb, J.R. Cheeseman, J.A. Jr. Montgomery, T. Vreven, K.N. Kudin, J.C. Burant, J.M. Millam, S.S. Iyengar, J. Tomasi, V. Barone, B. Mennucci, M. Cossi, G. Scalmani, N. Rega, G.A. Petersson, H. Nakatsuji, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, M. Klene, X. Li, J.E. Knox, H.P. Hratchian, J.B. Cross, C. Adamo, J. Jaramillo, R. Gomperts, R.E. Stratmann, O. Yazyev, A.J. Austin, R. Cammi, C. Pomelli, J.W. Ochterski, P.Y. Ayala, K. Morokuma, G.A. Voth, P. Salvador, J.J. Dannenberg, V.G. Zakrzewski, S. Dapprich, A.D. Daniels, M.C. Strain, O. Farkas, D.K. Malick, A.D. Rabuck, K. Raghavachari, J.B. Foresman, J.V. Ortiz, Q. Cui, A.G. Baboul, S. Clifford, J. Cioslowski, B.B. Stefanov, G. Liu, A. Liashenko, P. Piskorz, I. Komaromi, R.L. Martin, D.J. Fox, T. Keith, M.A. Al-Laham, C.Y. Peng, A. Nanayakkara, M. Challacombe, P.M.W. Gill, B. Johnson, W. Chen, M.W
    • Gaussian 03, M.J. Frisch, G. W. Trucks, H.B. Schlegel, G.E. Scuseria, M.A. Robb, J.R. Cheeseman, J.A. Jr. Montgomery, T. Vreven, K.N. Kudin, J.C. Burant, J.M. Millam, S.S. Iyengar, J. Tomasi, V. Barone, B. Mennucci, M. Cossi, G. Scalmani, N. Rega, G.A. Petersson, H. Nakatsuji, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, M. Klene, X. Li, J.E. Knox, H.P. Hratchian, J.B. Cross, C. Adamo, J. Jaramillo, R. Gomperts, R.E. Stratmann, O. Yazyev, A.J. Austin, R. Cammi, C. Pomelli, J.W. Ochterski, P.Y. Ayala, K. Morokuma, G.A. Voth, P. Salvador, J.J. Dannenberg, V.G. Zakrzewski, S. Dapprich, A.D. Daniels, M.C. Strain, O. Farkas, D.K. Malick, A.D. Rabuck, K. Raghavachari, J.B. Foresman, J.V. Ortiz, Q. Cui, A.G. Baboul, S. Clifford, J. Cioslowski, B.B. Stefanov, G. Liu, A. Liashenko, P. Piskorz, I. Komaromi, R.L. Martin, D.J. Fox, T. Keith, M.A. Al-Laham, C.Y. Peng, A. Nanayakkara, M. Challacombe, P.M.W. Gill, B. Johnson, W. Chen, M.W. Wong, C. Gonzalez, J.A. Pople, Gaussian, Inc., Revision A.1, 2003, Pittsburgh, PA.
  • 34
    • 0021871375 scopus 로고
    • Computational procedure for determining energetically favourable binding sites on biologically important macromolecules
    • Goodford P.J. Computational procedure for determining energetically favourable binding sites on biologically important macromolecules. J. Med. Chem. 28 (1985) 849-857
    • (1985) J. Med. Chem. , vol.28 , pp. 849-857
    • Goodford, P.J.1
  • 35
    • 75049084868 scopus 로고    scopus 로고
    • Insight II user Guide, 2005, Accelrys, San Diego, CA.
    • Insight II user Guide, 2005, Accelrys, San Diego, CA.
  • 36
    • 0031024171 scopus 로고    scopus 로고
    • Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
    • Lipinski C.A., Lombardo F., Dominy B.W., and Feeney P.J. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv. Drug Deliv. Rev. 23 (1997) 3
    • (1997) Adv. Drug Deliv. Rev. , vol.23 , pp. 3
    • Lipinski, C.A.1    Lombardo, F.2    Dominy, B.W.3    Feeney, P.J.4
  • 37
    • 33846886098 scopus 로고    scopus 로고
    • Mapping pharmaceuticals in tissues using MALDI imaging mass spectrometry
    • Hsieh Y., Chen J., and Korfmacher W.A. Mapping pharmaceuticals in tissues using MALDI imaging mass spectrometry. J. Pharmacol. Toxicol. Methods 55 (2007) 193-200
    • (2007) J. Pharmacol. Toxicol. Methods , vol.55 , pp. 193-200
    • Hsieh, Y.1    Chen, J.2    Korfmacher, W.A.3
  • 39
    • 2642568535 scopus 로고    scopus 로고
    • Crystal structures of the anticancer clinical candidates R115777 (Tipifarnib) and BMS-214662 complexed with protein farnesyltransferase suggest a mechanism of FTI selectivity
    • Reid T.S., and Beese L.S. Crystal structures of the anticancer clinical candidates R115777 (Tipifarnib) and BMS-214662 complexed with protein farnesyltransferase suggest a mechanism of FTI selectivity. Biochemistry 43 (2004) 6877-6884
    • (2004) Biochemistry , vol.43 , pp. 6877-6884
    • Reid, T.S.1    Beese, L.S.2
  • 40
    • 3142781361 scopus 로고    scopus 로고
    • Crystallographic analysis reveals that anticancer clinical candidate L-778,123 inhibits protein farnesyltransferase and geranylgeranyltransferase-I by different binding modes
    • Reid T.S., Long S.B., and Beese L.S. Crystallographic analysis reveals that anticancer clinical candidate L-778,123 inhibits protein farnesyltransferase and geranylgeranyltransferase-I by different binding modes. Biochemistry 43 (2004) 9000-9008
    • (2004) Biochemistry , vol.43 , pp. 9000-9008
    • Reid, T.S.1    Long, S.B.2    Beese, L.S.3
  • 42
    • 0037364162 scopus 로고    scopus 로고
    • ADMET in silico modeling: towards prediction paradise?
    • van de Waterbeemd H., and Gifford E. ADMET in silico modeling: towards prediction paradise?. Nature 2 (2003) 192-204
    • (2003) Nature , vol.2 , pp. 192-204
    • van de Waterbeemd, H.1    Gifford, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.