Molecular phylogeny of Scorzoneroides (Asteraceae): Evolution of heterocarpy and annual habit in unpredictable environments

Molecular Phylogenetics and Evolution

Volumn 53, Issue 3, 2009, Pages 835-847

  Cruz Mazo, G ^a   Buide, M L ^a   Samuel, R ^b   Narbona, E ^a  

^a UNIVERSIDAD PABLO DE OLAVIDE   (Spain)

^b UNIVERSITY OF VIENNA   (Austria)

Author keywords

Ancestral state reconstruction; Asteraceae; Character association; Fruit heteromorphism; ITS; Life history; Molecular phylogeny; ndhF rpl32; rpl32 trnL; Scorzoneroides

Indexed keywords

ASTERACEAE;

CHLOROPLAST DNA; PLANT DNA; RIBOSOMAL SPACER DNA;

ARTICLE; ASTERACEAE; BAYES THEOREM; CELL NUCLEUS; CLASSIFICATION; DNA SEQUENCE; ECOSYSTEM; FLOWER; GENETICS; HISTOLOGY; MOLECULAR EVOLUTION; PHYLOGENY;

ASTERACEAE; BAYES THEOREM; CELL NUCLEUS; DNA, CHLOROPLAST; DNA, PLANT; DNA, RIBOSOMAL SPACER; ECOSYSTEM; EVOLUTION, MOLECULAR; FLOWERS; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

EID: 74949095557     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2009.08.001     Document Type: Article

References (79)

1. Álvarez Fernández, I., Fuertes Aguilar, J., Panero, J.L., Nieto Feliner, G., 2001. A phylogenetic analysis of Doronicum (Asteraceae, Senecioneae) based on morphological, nuclear ribosomal (ITS), and chloroplast (trnL-F) evidence. Mol. Phylogenet. Evol. 20, 41-64.
2. Baldwin, B.G., 1992. Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: an example from the Compositae. Mol. Phylogenet. Evol. 1, 3-16.
3. Blanca, G., López Onieva, M.R., Lorite, J., Martínez Lirola, M.J., Molero Mesa, J., Quintas, S., Ruiz Girela, M., Varo, M.A., Vidal, S., 2002. Flora Amenazada y Endémica de Sierra Nevada. Universidad de Granada, Granada, Spain.
4. Blattner, F.R., 1999. Direct amplification of the entire ITS region from poorly preserved plant material using recombinant PCR. BioTechniques 27, 1180-1186.
5. Bollback, J.P., 2006. SIMMAP: stochastic character mapping of discrete traits on phylogenies. BMC Bioinform. 7, 88.
6. Bremer, K., 1994. Asteraceae. Timber Press, Portland.
7. Cerbah, M., Souza-Chies, T., Jubier, M.F., Lejeune, B., Siljak-Yakovlev, S., 1998. Molecular phylogeny of the genus Hypochaeris using internal transcribed spacers of nuclear rDNA: inference for chromosomal evolution. Mol. Biol. Evol. 15, 345-354.
8. Crawford, D.J., Mort, M.E., 2005. Phylogeny of eastern north American Coreopsis (Asteraceae-Coreopsideae): insights from nuclear and plastid sequences, and comments on character evolution. Am. J. Bot. 92, 330-336.
9. Crawley, M.J., 1997. Plant Ecology. Blackwell Science, Oxford.
10. Datson, P.M., Murray, B.G., Steiner, E., 2008. Climate and the evolution of annual/perennial life-histories in Nemesia (Scrophulariaceae). Plant Syst. Evol. 270, 39-57.
11. Doyle, J.J., Doyle, J.L., 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19, 11-15.
12. Drummond, C.S., 2008. Diversification of Lupinus (Leguminosae) in the western New World: derived evolution of perennial life history and colonization of montane habitats. Mol. Phylogenet. Evol. 48, 408-421.
13. Ellner, S., Shmida, A., 1981. Why are adaptations for long-range seed dispersal rare in desert plants? Oecologia 51, 133-144.
14. Ehrendorfer, F., 1970. Evolutionary patterns and strategies in seed plants. Taxon 19, 185-195.
15. Favarger, J.S., 1959. Notes de caryologie alpine. III. Bull. Soc. Neuchâteloise Sci. Nat. 82, 255-285.
16. Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the Bootstrap. Evolution 39, 783-791.
17. Finch, R.A., 1967. Natural chromosome variation in Leontodon. Heredity 22, 359-386.
18. Finch, R.A., Sell, P.D., 1976. Leontodon. In: Tutin, T.G. et al. (Eds.), Flora Europaea, vol. 4, Plantaginaceae to Compositae (and Rubiaceae). Cambridge University Press, Cambridge, pp. 310-315.
19. Fiz, O., Valcárcel, V., Vargas, P., 2002. Phylogenetic position of Mediterranean Astereae and character evolution of daisies (Bellis, Asteraceae) inferred from nrDNA ITS sequences. Mol. Phylogenet. Evol. 25, 157-171.
20. García, L.V., 2004. Escaping the Bonferroni iron claw in ecological studies. Oikos 105, 657-663.
21. Gouan, A., 1773. Illustrationes et Observationes botanicae, ad Specierum Historiam/atientes, seu rariorum Plantarum indigenarum, pyrenaicarum, exoticarum Adumbrationes, Zurich.
22. Grass, S., Zidorn, C., Blattner, F.R., Stuppner, H., 2006. Comparative molecular and phytochemical investigation of Leontodon autumnalis (Asteraceae, Lactuceae) populations from Central Europe. Phytochemistry 67, 122-131.
23. Greuter, W., Gutermann, W., Talavera, S., 2006. A preliminary conspectus of Scorzoneroides (Compositae, Cichorieae) with validation of the required new names. Willdenowia 36, 689-692.
24. Gutermann, W., 2006. Notulae nomenclaturales 19-25 (Neue Namen und Kombinationen zur Flora Südtirols). Phyton 46, 71-81.
25. Harper, J.L., 1977. Population Biology of Plants. Academic Press, New York.
26. Harvey, P.H., Pagel, M.D., 1991. The Comparative Method in Evolutionary Biology. Oxford University Press, Oxford.
27. Halkka, L., 1985. Chromosome counts of Finnish vascular plants. Ann. Bot. Fenn. 22, 315-317.
28. Holub, J., 1977. New names in Phanerogamae 5. Folia Geobot. Phytotax. 12, 293-311.
29. Huelsenbecjk, J.P., Rannala, B., Masly, J.P., 2000. Accommodating phylogenetic uncertainty in evolutionary studies. Science 288, 2349-2350.
30. Huelsenbeck, J.P., Nielsen, R., Bollback, J.P., 2003. Stochastic mapping of morphological characters. Syst. Biol. 52, 131-158.
31. Hughes, C.E., Eastwood, R.J., Bailey, C.D., 2006. From famine to feast? Selecting nuclear DNA sequence loci for plant species-level phylogeny reconstruction. Philos. Trans. R. Soc. Lond. B 361, 211-225.
32. Imbert, E., 2002. Ecological consequences and ontogeny of seed heteromorphism. Perspect. Plant Ecol. Evol. Syst. 5, 13-36.
33. Izuzquiza, A., Nieto Feliner, G., 1991. Cytotaxonomic notes on the genus Leontodon (Asteraceae, Hypochaeridinae). Willdenowia 21, 215-224.
34. Kishino, H., Hasegawa, M., 1989. Evaluation of the maximum likelihood estimates of the evolutionary tree topologies from sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29, 170-179.
35. Kropf, M., Kadereit, J.W., Comes, H.P., 2003. Differential cycles of range contraction and expansion in European high mountain plants during the Late Quaternary: insights from Pritzelago alpina (L.) O. Kuntze (Brassicaceae). Mol. Ecol. 12, 931-949.
36. Lange, J., 1878. Pugillus plantarum imprimis hispanicarum, quas in itinere 1851-52 legit Joh. Lange. II. Vidensk. Meddel. Dansk Naturhist. Foren. Kjobenhavn 1861, 32-116.
37. Leschen, R.A.B., Buckley, T.R., 2007. Multistate characters and diet shifts: evolution of Erotylidae (Coleoptera). Syst. Biol. 56, 97-112.
38. Linder, C.R., Rieseberg, L.H., 2004. Reconstructing patterns of reticulate evolution in plants. Am. J. Bot. 91, 1700-1708.
39. Martins, E.P., 2000. Adaptation and the comparative method. Trends Ecol. Evol. 15, 295-299.
40. Nieto Feliner, G., Roselló, J.A., 2007. Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants. Mol. Phylogenet. Evol. 44, 911-919.
41. Nylander, J.A.A., 2002. MrModeltest v. 1.0b. Department of Systematic Zoology, Uppsala University (program distributed by the author).
42. Ortiz, M.A., Tremetsberger, K., Terrab, A., Stuessy, T.F., García-Castaño, J.L., Urtubey, E., Baeza, C.M., Ruas, C.F., Gibbs, P.E., Talavera, S., 2008. Phylogeography of the invasive weed Hypochaeris radicata (Asteraceae): from Moroccan origin to world-wide introduced populations. Mol. Ecol. 17, 3654-3667.
43. Plitmann, U., 1986. Alternative modes in dispersal strategies with an emphasis on herbaceous plants of the Middle East. Proc. R. Soc. Edin. 89, 193-202.
44. Posada, D., Crandall, K.A., 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817-818.
45. Posada, D., Crandall, K.A., 2001. Selecting the best-fit model of nucleotide substitution. Syst. Biol. 50, 580-601.
46. Raffiudin, R., Croizer, R.H., 2007. Phylogenetic analysis of honey bee behavioral evolution. Mol. Phylogenet. Evol. 43, 543-552.
47. Ronquist, F., 2004. Bayesian inference of character evolution. Trends Ecol. Evol. 19, 475-481.
48. Ronquist, F., Hueselbeck, J.P., 2003. Mr Bayes 3: Bayesian phylogenetic inference under mix models. Bioinformatics 19, 1572-1574.
49. Rousi, A., 1973. Studies on the cytotaxonomy and mode of reproduction of Leontodon (Compositae). Ann. Bot. Fenn. 10, 201-215.
50. Samuel, R., Stuessy, T.F., Tremetsberger, K., Baeza, C.M., Siljak-Yakovlev, S., 2003. Phylogenetic relationships among species of Hypochaeris (Asteraceae, Cichorieae) based on ITS, plastid trnL intron, trnL spacer, and matk sequences. Am. J. Bot. 90, 496-507.
51. Samuel, R., Gutermann, W., Stuessy, T.D., Ruas, F.C.F., Lack, H.W., Tremetsberger, K., Talavera, S., Hermanowski, B., Ehrendorfer, F., 2006. Molecular phylogenetics reveals Leontodon (Asteraceae, Lactuceae) to be diphyletic. Am. J. Bot. 93, 1193-1205.
52. Schultheis, L.M., 2001. Systematic of Downingia (Campanulaceae) based on molecular sequence data: implications for floral and chromosome evolution. Syst. Bot. 26, 603-621.
53. Schultz, T.R., Churchill, G.A., 1999. The role of subjectivity in reconstructing ancestral character states: a Bayesian approach to unknown rates, states, and transformation asymmetries. Syst. Biol. 48, 651-664.
54. Silvertown, J., Charlesworth, D., 2001. Introduction to Plant Population Biology. Blackwell Science, Oxford.
55. Shaw, J., Lickey, E.B., Schilling, E.E., Small, R.L., 2007. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. Am. J. Bot. 94, 275-288.
56. Stebbins, G.L., 1957. Self fertilization and population variability in the higher plants. Am. Nat. 91, 337-354.
57. Stebbins, G.L., 1974. Flowering plants: evolution above the species level. Harvard University Press, Cambridge.
58. Storey, J.D., Tibshirani, R., 2003. Statistical significance for genomewide studies. Proc. Nat. Acad. Sci. USA 100, 9440-9445.
59. Storey, J.D., Taylor, J.E., Siegmund, D., 2004. Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: a unified approach. J. Roy. Stat. Soc. Ser. B 66,187-205.
60. Swofford, D.L., 2002. PAUP*: Phylogenetic Analysis Using Parsimony (* and others methods). Version 4.0b10. Sinauer Associates, Sunderland.
61. Tank, D.C., Olmstead, R.G., 2008. From annuals to perennials: phylogeny of subtribe Castillejinae (Orobanchaceae). Am. J. Bot. 95, 608-625.
62. Thompson, J.D., Higgins, D.G., Gibson, T.J., 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
63. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., Higgins, D.G., 1997. The Clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882.
64. Timme, R., Kuehl, E.J., Boore, J.L., Jansen, R.K., 2007. A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats. Am. J. Bot. 94, 302-313.
65. Tremetsberger, K., Weiss-Schneeweiss, H., Stuessy, T., Samuel, R., Kadlec, G., Ortiz, M.A., Talavera, S., 2005. Nuclear ribosomal DNA and karyotypes indicate a NW African origin of South American Hypochaeris (Asteraceae, Cichorieae). Mol. Phylogenet. Evol. 35, 102-116.
66. Vargas, P., 2003. Molecular evidence for multiple diversification patterns of alpine plants in Mediterranean Europe. Taxon 52, 463-476.
67. Verboom, G.A., Linder, H.P., Stock, W.D., 2003. Phylogenetics of the grass genus Ehrharta: evidence for radiation in the summer-arid zone of the South African Cape. Evolution 57, 1008-1021.
68. Venable, D.L., Lawlor, L., 1980. Delayed germination and dispersal in desert annuals, escape in space and time. Oecologia 46, 272-282.
69. Venable, D.L., Dyreson, E., Morales, E., 1995. Population dynamic consequences and evolution of seeds traits of Heterosperma pinnatum (Asteraceae). Am. J. Bot. 82, 410-420.
70. White, T.J., Bruns, T., Lee, S., Taylor, J., 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M. et al. (Eds.), PCR Protocols: A Guide to Methods and Amplifications. Academic Press, San Diego, pp. 315-322.
71. Widder, F.J., 1937. Beiträge zur Kenntnis der Gattung Leontodon III: L. helveticus Mérat emend. (L. pyrenaicus auct. Non Gouan!). Ber. Geobot. Forschungsinst. Rübel Zürich 1936, 77-84.
72. Widder, F.J., 1975. Die Gliederung der Gattung Leontodon. Phyton 17, 23-29.
73. Wiens, J.J., 1999. Polymorphism in systematics and comparative biology. Annu. Rev. Ecol. Syst. 30, 327-362.
74. Zidorn, C, 2006. Sesquiterpenoids as chemosystematic markers in the subtribe Hypochaeridinae (Lactuceae, Asteraceae). Biochem. Syst. Ecol. 34,144-159.
75. Zidorn, C, Stuppner, H., 2001a. Evaluation of chemosystematic characters in the genus Leontodon (Asteraceae). Taxon 50,115-133.
76. Zidorn, C, Stuppner, H., 2001b. Chemosystematics of taxa from the Leontodon section Oporinia. Biochem. Syst. Ecol. 29, 827-837.
77. Zidorn, C, Ellmer-Müller, E.P., Stuppner, H., 2001. On the occurrence of glucozaluzanin C in Leontodon cichoraceus and its chemotaxonomic significance. Biochem. Syst. Ecol. 29, 545-547.
78. Zidorn, C, Ellmer-Müller, E.P., Ongamia, K.H., Sturm, S., Stuppner, H., 2000. New taxonomically significant sesquitermpenoids from Leontodon autumnalis. J. Nat. Prod. 63, 812-816.
79. Zohary, M., 1950. Evolutionary trends in the fruiting head of Compositae. Evolution 4, 103-109.