Phylogenetic relationships among species of Hypochaeris (Asteraceae, Cichorieae) based on ITS, plastid trnL intron, trnL-F spacer, and matK sequences

American Journal of Botany

Volumn 90, Issue 3, 2003, Pages 496-507

  Samuel, Rosabelle ^a   Stuessy, Tod F ^a   Tremetsberger, Karin ^a   Baeza, Carlos M ^b   Siljak Yakovlev, Sonia ^c  

^a UNIVERSITY OF VIENNA   (Austria)

^b UNIVERSITY OF CONCEPCIÓN   (Chile)

^c UNIVERSITÉ PARIS SACLAY   (France)

Author keywords

Asteraceae; Biogeography; Cichorieae; Hypochaeridinae; Hypochaeris; Leontodon; Phylogenetics

Indexed keywords

ANGIOSPERM; BIOGEOGRAPHY; PHYLOGENETICS;

ASTERACEAE; CICHORIEAE; EMBRYOPHYTA; HELMINTHOTHECA; HYPOCHAERIS; HYPOCHAERIS ROBERTIA; LEONTODON; LEONTODON AUTUMNALIS; LEONTODON HELVETICUS; LEONTODON HELVITICUS; MAGNOLIOPHYTA; PICRIS; ROBERTIA;

EID: 0345137496     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.90.3.496     Document Type: Article

References (64)

1. AOKI, S., AND M. ITO. 2000. Molecular phylogeny of Nicotiana (Solanaceae) based on the nucleotide sequence of the matK gene. Plant Biology 2: 253-378.
2. BAKER, W. J., C. B. ASMUSSEN, S. BARROW, J. DRANSFIELD, AND T. A. HENDERSON. 2000. A phylogenetic study of the palm family (Palmae) based on chloroplast DNA sequences from the trnL-trnF region. Plant Systematics and Evolution 219: 111-126.
3. BALDWIN, B. G. 1992. Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: an example from the Compositae. Molecular Phylogenetics and Evolution 1: 3-16.
4. BALDWIN, B. G., M. J. SANDERSON, J. M. PORTER, M. F. WOJCIECHOWSKI, C. S. CAMPELL, AND M. J. DONOGHUE. 1995. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Annals of the Missouri Botanical Garden 82: 247-277.
5. BARGHI, N., C. MUGNIER, AND S. SILJAK-YAKOVLEV. 1989. Karyological studies in some Hypochaeris spp. (Compositae) from Sicily. Plant Systematics and Evolution 168: 49-57.
6. BAYER, R. J., C. F. PUTTOCK, AND S. A. KELCHNER. 2000. Phylogeny of South African Gnaphalieae (Asteraceae) based on two non-coding chloroplast sequences. American Journal of Botany 87: 259-272.
7. BAYER, R. J., AND J. R. STARR. 1998. Tribal phylogeny of the Asteraceae based on two non-coding chloroplast sequences, the trnL intron and trnl/ trnF intergenic spacer. Annals of the Missouri Botanical Garden 85: 242-256.
8. BENTHAM, G. 1873. Hypochaeris. In G. Bentham and J. D. Hooker [eds.], Genera plantarum, vol. 2, 519-520. Reeve, London, UK.
9. BORTIRI, E. 1997. Novedades en Hypochaeris (Compositae, Cichorieae) de la Argentina. Hickenia 2: 223-232.
10. BORTIRI, E. 1999. Tribu XIII. Lactuceae: Hypochaeris. 280. Asteraceae, parte 14. Flora fanerogámica Argentina, Fasc. 63. Proflora (Conicyt), Córdoba, Argentina.
11. BREMER, K. 1994. Asteraceae: cladistics and classification. Timber Press, Portland, Oregon, USA.
12. CABRERA, A. L. 1963. Materiales para una revisión del género Hypochaeris I. Hypochaeris chillensis (H.B.K.) Hieron. Darwiniana 22: 312-322.
13. CABRERA, A. L. 1971. Compositae. In M. N. Correa [ed.], Flora Patagonica, vol. 7. Instituto Nacional de Tecnología Agropecuaria (INTA), Buenos Aires, Argentina.
14. CABRERA, A. L. 1974. Compositae. In A. Burkart [ed.], Flora ilustrada de Entre Ríos, vol. 6B, 106-540. Instituto Nacional de Tecnología Agropecuaria (INTA), Buenos Aires, Argentina.
15. CABRERA, A. L. 1976. Estudios sobre el género Hypochaeris. Boletin Sociedad Argentina de Botanica 10: 166-195.
16. CABRERA, A. L. 1978. Compositae. In A. L. Cabrera [ed.], Flora de la provincia de Jujuy, vol. 10. Instituto Nacional de Tecnología Agropecuaria (INTA), Buenos Aires, Argentina.
17. CARLQUIST, S. 1981. Island biology. Columbia University Press, New York, New York, USA.
18. CASSINI, H. 1827. Hypochéridées. Dictionnaire des Sciences Naturelles 48: 422. Paris, France.
19. CERBAH, M., J. COULAUD, B. GODELLE, AND S. SILJAK-YAKOLEV. 1995a. Genome size, fluorochrome banding and karyotype evolution in some Hypochaeris species. Genome 38: 689-695.
20. CERBAH, M., J. COULAUD, AND S. SILJAK-YAKOLEV. 1995b. 18S and 5S rDNA in situ hybridization in some Hypochaeris species. Chromosome Research 3(supplement 1): 46.
21. CERBAH, M., T. SOUZA-CHIES, M. F. JUBIER, B. LEJEUNE, AND S. SILJAK-YAKOVLEV. 1998. Molecular phylogeny of the genus Hypochaeris using internal transcribed spacers of nuclear rDNA: inference for chromosomal evolution. Molecular Biology and Evolution 15: 345-354.
22. CLEGG, M. T., B. S. GAUT, G. H. LEARN, JR., AND B. R. MORTON. 1994. Rates and patterns of chloroplast DNA evolution. Proceedings of the National Academy of Sciences, USA 91: 6795-6801.
23. CLEGG, M. T., AND G. ZURAWSKI. 1992. Chloroplast DNA and the study of plant phylogeny: present status and future prospects. In P. S. Soltis, D. E. Soltis, and J. J. Doyle [eds.], Molecular systematics of plants, 1-13. Chapman and Hall. New York, New York, USA.
24. CRAWFORD, D. J., N. S. LEE, AND T. F. STUESSY. 1992. Plant species disjunctions: perspectives from molecular data. Aliso 13: 395-409.
25. DE CANDOLLE, A. P. 1838. Hypochoeris. In Prodromus systematis naturalis regni vegetabilis, vol. 7, 90-97. Paris, France.
26. DE DALLA TORRE, C. G., AND H. HARMS. 1907. Hypochoeris. In Genera siphonogamarum ad systema Englerianum conscripta, 577-578. Engelmann, Lipsiae.
27. DE FILLIPPS, R. A. 1976. Hypochaeris. In T. G. Tutin, V. H. Heywood, N. A. Burges, D. M. Moore, D. H. Valentine, S. M. Walters, and D. A. Webb [eds.], Flora Europaea, vol. 4, Plantaginaceae to Compositae (and Rubiaceae), 308-317. Cambridge University Press, Cambridge, UK.
28. DOYLE, J. J., AND J. L. DOYLE. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
29. EL-GHAZALY, G. 1980. Palynology of Hypochaeridinae and Scolyminae (Compositae). Opera Botanica 58: 1-49.
30. FARRIS, J. S. 1969. A successive approximation approach to character weighting. Systematic Zoology 18: 374-385.
31. FELSENSTEIN, J. 1985. Confidence limits of phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
32. FINCH, R. A., AND P. D. SELL. 1976. Leontodon. In T. G. Tutin, V. H. Heywood, N. A. Burges, D. M. Moore, D. H. Valentine, S. M. Walters, and D. A. Webb [eds.], Flora Europaea, vol. 4, Plantaginaceae to Compositae (and Rubiaceae), 310-315. Cambridge University Press, Cambridge, UK.
33. GEMEINHOLZER, B., AND K. BACHMANN. 2002. Reconstruction of the phylogeny of the Lactuceae (Asteraceae) using the internal transcribed spacer regions ITS 1 + 2. Abstracts Sixth International Congress of Systematic and Evolutionary Biology, 287. Patras, Greece.
34. HIGGINS, D. G., A. J. BLEASBY, AND R. FUCHS. 1992. CLUSTAL: a new multiple sequence alignment program. Computer Applications in Bioscience 8: 189-191.
35. HILLIS, D. M., B. K. MABLE, AND C. MORITZ. 1996. Applications of molecular systematics; the state of the field and a look to the future. In D. M. Hillis, C. Moritz, and B. K. Mable [eds.], Molecular systematics, 2nd ed., 515-543. Sinauer, Sunderland, Massachusetts, USA.
36. HOFFMANN, O. 1890. Liguliflorae-Cichorieae. In A. Engler and K. Prantl [eds.], Die natürlichen Pflanzenfamilien, vol. 4(5), 350-387. Wilhelm Engelmann, Leipzig, Germany.
37. HUMPHRIES, C. J., AND L. PARENTI. 1986. Cladistic biogeography. Clarendon Press, Oxford, UK.
38. JOBST, J., K. KING, AND V. HEMLEBEN. 1998. Molecular evolution of the internal transcribed spacers (ITS1 and ITS2) and the phylogenetic relationships among species of the family Cucurbitaceae. Molecular Phylogenetics and Evolution 9: 204-219.
39. KELCHNER, S. A. 2000. The evolution of non-coding chloroplast DNA and its application in plant systematics. Annals of the Missouri Botanical Garden 87: 492-498.
40. KIM, S. C., D. J. CRAWFORD. AND R. K. JANSEN. 1996. Phylogenetic relationships among the genera of the subtribe Sonchinae (Asteraceae): evidence from ITS sequences. Systematic Botany 21: 417-432.
41. LACK, H. W. 1978. Die Gattung Heywoodiella Svent. and Bramw. (Asteraceae. Lactuceae). Willdenowia 8: 329-339.
42. LIANG, H. P., AND K. W. HILU. 1996. Application of the matK gene sequences to grass systematics. Canadian Journal of Botany 74: 125-134.
43. MARTIN, W., D. LYDIATE, H. BRINKMANN, G. FORKMANN, H. SAEDLER, AND R. CERFF. 1993. Molecular phytogenies in angiosperm evolution. Molecular Biology and Evolution 10: 140-162.
44. NEI, M., AND S. MAYAMOTA. 2000. Molecular evolution and phylogenetics. Oxford University Press, Oxford, UK.
45. NOYES, R. D., AND L. H. RIESEBERG. 1999. ITS sequence data support a single origin for North American Astereae (Asteraceae) and reflect deep geographic division in Aster s.l. American Journal of Botany 86: 398-421.
46. PALMER, J. D., R. K. JANSEN, H. J. MACHAELS, M. W. CHASE, AND J. R. MANHART. 1988. Chloroplast DNA variation and plant phylogeny. Annals of the Missouri Botanical Garden 75: 1180-1206.
47. PARKER, J. S. 1975. Aneuploidy and isolation in two Hypochaeris species. Chromosoma 52: 89-101.
48. RUAS, C. F., P. M. RUAS, N. I. MATZENBACHER, G. ROSS, C. BERNINI, AND A. L. L. VANZELA. 1995. Cytogenetic studies of some Hypochaeris species (Compositae) from Brazil. American Journal of Botany 82: 369-375.
49. SCHMIDT, G. J., AND E. E. SCHILLING. 2000. Phylogeny and biogeography of Eupatorium (Asteraceae: Eupatorieae) based on nuclear ITS sequence data. American Journal of Botany 87: 716-726.
50. SCHULTZ-BIPONTINUS, C. H. 1845. Hypochoerideae. Nova Acta Academiae Caesareae Leopoldino-Carolinae Naturae Curiosorum 21: 86-172.
51. SCHULTZ-BIPONTINUS, C. H. 1859. Revisio critica generis Achyrophori. Pollichia 16-17: 45-67.
52. SOLTIS, D. E., M. TAGO-NAKAZAWA, Q.-Y. XIANG, S. KAWANO, J. MURATA, M. WAKABAYASHI, AND C. HIBSCH-JETTER. 2001. Phylogenetic relationships and evolution in Chrysosplenium (Saxifragaceae) based on matK sequence data. American Journal of Botany 88: 883-893.
53. STEBBINS, G. L. 1971. Chromosomal evolution in higher plants. Edward Arnold, London, UK.
54. STUESSY, T. F., K. TREMETSBERGER, R. SAMUEL, J. JANKOWICZ, Y.-P. GUO, AND C. M. BAEZA. In press. Phylogenetic relationships among South American species of Hypochaeris (Asteraceae) based on AFLP data. In B. A. Schaal, T.-Y. Chiang, and C.-H. Chou (eds.), Plant genetic diversity: analysis and applications. Taiwan Endemic Species Research Institute, Chi-Chi, Taiwan.
55. SUH, Y., L. B. THIEN, H. E. REEVE, AND E. A. ZIMMER. 1993. Molecular evolution and phylogenetic implications of internal transcribed spacer sequences of ribosomal DNA in Winteraceae. American Journal of Botany 80: 1042-1055.
56. SVENTENIUS, E. R., AND D. BRAMWELL. 1971. Heywoodiella Svent. et Bramwell, genus novum (Compositae, Liguliflorae, Cichorieae, Crepidinae). Acta Phytotaxonomica Barcinonensia 7: 1-8.
57. SWOFFORD, D. L. 1998. PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0b8. Sinauer, Sunderland, Massachusetts, USA.
58. TABERLET, P., L. GIELLY, G. PAUTOU, AND J. BOUVET. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109.
59. VIJVERBERG, K., T. H. M. MES, AND K. BACHMANN. 1999. Chloroplast DNA evidence for the evolution of Microseris (Asteraceae) in Australia and New Zealand after long-distance dispersal from western North America. American Journal of Botany 86: 1448-1463.
60. WEISS, H., T. F. STUESSY, J. GRAU, AND C. M. BAEZA. In press. Chromosome reports from South American Hypochaeris (Asteraceae). Annals of the Missouri Botanical Garden.
61. WHITTON, J., R. S. WALLACE, AND R. K. JANSEN. 1995. Phylogenetic relationships and pattern of character change in the tribe Lactuceae (Asteraceae) based on chloroplast DNA restriction site variation. Canadian Journal of Botany 73: 1058-1073.
62. WIDDER, J. J. 1975. Die Gliederung der Gattung Leontodon. Phyton (Austria) 17: 23-29.
63. WOLFE, K. H., P. M. SHARP, AND W.-H. LI. 1989. Rates of synonymous substitution in plant nuclear genes. Journal of Molecular Evolution 29: 208-211.
64. XIANG, Q.-Y., D. E. SOLTIS, AND P. S. SOLTIS. 1998. Phylogenetic relationships of Cornaceae and close relatives inferred from matK and rbcL sequences. American Journal of Botany 85: 285-297.