메뉴 건너뛰기




Volumn 17, Issue 11, 2005, Pages 2859-2872

A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement

Author keywords

[No Author keywords available]

Indexed keywords

GENES; GENETIC ENGINEERING; PLANT CELL CULTURE; STATISTICAL TESTS;

EID: 33344469072     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.105.037242     Document Type: Article
Times cited : (207)

References (56)
  • 1
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative (2000). Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 2
    • 3242723316 scopus 로고    scopus 로고
    • DNA methylation and epigenetics
    • Bender, J. (2004). DNA methylation and epigenetics. Annu. Rev. Plant Biol. 55, 41-68.
    • (2004) Annu. Rev. Plant Biol. , vol.55 , pp. 41-68
    • Bender, J.1
  • 3
    • 0036010772 scopus 로고    scopus 로고
    • Insertion-deletion polymorphisms in 3′ regions of maize genes occur frequently and can be used as highly informative genetic markers
    • Bhattramakki, D., Dolan, M., Hanafey, M., Wineland, R., Vaske, D., Register III, J.C., Tingey, S.V., and Rafalski, A. (2002). Insertion-deletion polymorphisms in 3′ regions of maize genes occur frequently and can be used as highly informative genetic markers. Plant Mol. Biol. 48, 539-547.
    • (2002) Plant Mol. Biol. , vol.48 , pp. 539-547
    • Bhattramakki, D.1    Dolan, M.2    Hanafey, M.3    Wineland, R.4    Vaske, D.5    Register III, J.C.6    Tingey, S.V.7    Rafalski, A.8
  • 4
    • 1642514950 scopus 로고    scopus 로고
    • Pattern of diversity in the genomic region near the maize domestication gene tb1
    • Clark, R.M., Linton, E., Messing, J., and Doebley, J.F. (2004). Pattern of diversity in the genomic region near the maize domestication gene tb1. Proc. Natl. Acad. Sci. USA 101, 700-707.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 700-707
    • Clark, R.M.1    Linton, E.2    Messing, J.3    Doebley, J.F.4
  • 5
    • 0030893329 scopus 로고    scopus 로고
    • The evolution of apical dominance in maize
    • Doebley, J., Stec, A., and Hubbard, L. (1997). The evolution of apical dominance in maize. Nature 386, 485-488.
    • (1997) Nature , vol.386 , pp. 485-488
    • Doebley, J.1    Stec, A.2    Hubbard, L.3
  • 6
    • 0027437422 scopus 로고
    • Teosinte glume architecture 1: A genetic locus controlling a key step in maize evolution
    • Dorweiler, J., Stec, A., Kermicle, J., and Doebley, J. (1993). Teosinte glume architecture 1: A genetic locus controlling a key step in maize evolution. Science 262, 233-235.
    • (1993) Science , vol.262 , pp. 233-235
    • Dorweiler, J.1    Stec, A.2    Kermicle, J.3    Doebley, J.4
  • 7
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using Phred. II. Error probabilities
    • Ewing, B., and Green, P. (1998). Base-calling of automated sequencer traces using Phred. II. Error probabilities. Genome Res. 8, 186-194.
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 8
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using Phred. I. Accuracy assessment
    • Ewing, B., Hillier, L., Wendl, M.C., and Green, P. (1998). Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res. 8, 175-185.
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 11
    • 0037154275 scopus 로고    scopus 로고
    • Recombination rates between adjacent genic and retrotransposon regions in maize vary by 2 orders of magnitude
    • Fu, H., Zheng, Z., and Dooner, H.K. (2002). Recombination rates between adjacent genic and retrotransposon regions in maize vary by 2 orders of magnitude. Proc. Natl. Acad. Sci. USA 99, 1082-1087.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 1082-1087
    • Fu, H.1    Zheng, Z.2    Dooner, H.K.3
  • 13
    • 1842465830 scopus 로고    scopus 로고
    • Comparative population genetics of the panicoid grasses: Sequence polymorphism, linkage disequilibrium and selection in a diverse sample of Sorghum bicolor
    • Hamblin, M.T., Mitchell, S.E., White, G.M., Gallego, J., Kukatla, R., Wing, R.A., Paterson, A.H., and Kresovich, S. (2004). Comparative population genetics of the panicoid grasses: Sequence polymorphism, linkage disequilibrium and selection in a diverse sample of Sorghum bicolor. Genetics 167, 471-483.
    • (2004) Genetics , vol.167 , pp. 471-483
    • Hamblin, M.T.1    Mitchell, S.E.2    White, G.M.3    Gallego, J.4    Kukatla, R.5    Wing, R.A.6    Paterson, A.H.7    Kresovich, S.8
  • 14
    • 0029891606 scopus 로고    scopus 로고
    • Evolution of anthocyanin biosynthesis in maize kernels: The role of regulatory and enzymatic loci
    • Hanson, M.A., Gaut, B.S., Stec, A.O., Fuerstenberg, S.I., Goodman, M.M., Coe, E.H., and Doebley, J.F. (1996). Evolution of anthocyanin biosynthesis in maize kernels: The role of regulatory and enzymatic loci. Genetics 143, 1395-1407.
    • (1996) Genetics , vol.143 , pp. 1395-1407
    • Hanson, M.A.1    Gaut, B.S.2    Stec, A.O.3    Fuerstenberg, S.I.4    Goodman, M.M.5    Coe, E.H.6    Doebley, J.F.7
  • 15
    • 0031710286 scopus 로고    scopus 로고
    • Speciation and domestication in maize and its wild relatives: Evidence from the Globulin-1 gene
    • Hitton, H., and Gaut, B.S. (1998). Speciation and domestication in maize and its wild relatives: Evidence from the Globulin-1 gene. Genetics 150, 863-872.
    • (1998) Genetics , vol.150 , pp. 863-872
    • Hitton, H.1    Gaut, B.S.2
  • 16
    • 0035692320 scopus 로고    scopus 로고
    • Two-locus sampling distributions and their application
    • Hudson, R.R. (2001). Two-locus sampling distributions and their application. Genetics 159, 1805-1817.
    • (2001) Genetics , vol.159 , pp. 1805-1817
    • Hudson, R.R.1
  • 17
    • 0023339852 scopus 로고
    • A test of neutral molecular evolution based on nucleotide data
    • Hudson, R.R., Kreitman, M., and Aguadé, M. (1987). A test of neutral molecular evolution based on nucleotide data. Genetics 116, 153-159.
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.1    Kreitman, M.2    Aguadé, M.3
  • 18
    • 3242714766 scopus 로고    scopus 로고
    • Pattern of polymorphism after strong artificial selection in a domestication event
    • Innan, H., and Kim, Y. (2004). Pattern of polymorphism after strong artificial selection in a domestication event. Proc. Natl. Acad. Sci. USA 101, 10667-10672.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 10667-10672
    • Innan, H.1    Kim, Y.2
  • 19
    • 0029181313 scopus 로고
    • Characterization of cDNAs encoding small GTP-binding proteins from maize
    • Kang, K.K., Sano, H., and Kameya, T. (1995). Characterization of cDNAs encoding small GTP-binding proteins from maize. Plant Physiol. 107, 275-276.
    • (1995) Plant Physiol. , vol.107 , pp. 275-276
    • Kang, K.K.1    Sano, H.2    Kameya, T.3
  • 20
    • 0028484869 scopus 로고
    • Cloning and characterization of five cDNA for genes differentially expressed during fruit development of kiwifruit (Actinidia deliciosa var. deliciosa)
    • Ledger, S.E., and Gardner, R.C. (1994). Cloning and characterization of five cDNA for genes differentially expressed during fruit development of kiwifruit (Actinidia deliciosa var. deliciosa). Plant Mol. Biol. 25, 877-886.
    • (1994) Plant Mol. Biol. , vol.25 , pp. 877-886
    • Ledger, S.E.1    Gardner, R.C.2
  • 21
    • 0347991996 scopus 로고    scopus 로고
    • Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites
    • Liu, K., Goodman, M., Muse, S., Smith, J.S., Buckler, E., and Doebley, J. (2003). Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites. Genetics 165, 2117-2128.
    • (2003) Genetics , vol.165 , pp. 2117-2128
    • Liu, K.1    Goodman, M.2    Muse, S.3    Smith, J.S.4    Buckler, E.5    Doebley, J.6
  • 22
    • 0031876527 scopus 로고    scopus 로고
    • Transposons, DNA methylation and gene control
    • Martienssen, R. (1998). Transposons, DNA methylation and gene control. Trends Genet. 14, 263-264.
    • (1998) Trends Genet. , vol.14 , pp. 263-264
    • Martienssen, R.1
  • 24
    • 14044276992 scopus 로고    scopus 로고
    • Low levels of linkage disequilibrium in wild barley (Hordeum vulgare ssp. spontaneum) despite high rates of self-fertilization
    • Morrell, P.L., Toleno, D.M., Lundy, K.E., and Clegg, M.T. (2005). Low levels of linkage disequilibrium in wild barley (Hordeum vulgare ssp. spontaneum) despite high rates of self-fertilization. Proc. Natl. Acad. Sci. USA 102, 2442-2447.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 2442-2447
    • Morrell, P.L.1    Toleno, D.M.2    Lundy, K.E.3    Clegg, M.T.4
  • 25
    • 0034724516 scopus 로고    scopus 로고
    • FKF1, a clock-controlled gene that regulates the transition to flowering in Arabidopsis
    • Nelson, D.C., Lasswell, J., Rogg, L.E., Cohen, M.A., and Bartel, B. (2000), FKF1, a clock-controlled gene that regulates the transition to flowering in Arabidopsis. Cell 101, 331-340.
    • (2000) Cell , vol.101 , pp. 331-340
    • Nelson, D.C.1    Lasswell, J.2    Rogg, L.E.3    Cohen, M.A.4    Bartel, B.5
  • 26
    • 3042714186 scopus 로고    scopus 로고
    • Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep
    • Palaisa, K., Morgante, M., Tingey, S., and Rafalski, A. (2004). Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep. Proc. Natl. Acad. Sci. USA 101, 9885-9890.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 9885-9890
    • Palaisa, K.1    Morgante, M.2    Tingey, S.3    Rafalski, A.4
  • 27
    • 0041419283 scopus 로고    scopus 로고
    • Contrasting effects of selection on sequence diversity and linkage disequilibrium at two phytoene synthase loci
    • Palaisa, K.A., Morgante, M., Williams, M., and Rafalski, A. (2003). Contrasting effects of selection on sequence diversity and linkage disequilibrium at two phytoene synthase loci. Plant Cell 15, 1795-1806.
    • (2003) Plant Cell , vol.15 , pp. 1795-1806
    • Palaisa, K.A.1    Morgante, M.2    Williams, M.3    Rafalski, A.4
  • 28
    • 0035852696 scopus 로고    scopus 로고
    • The earliest archaeological maize (Zea mays L.) from highland Mexico: New accelerator mass spectrometry dates and their implications
    • Piperno, D.R., and Flannery, K.V. (2001). The earliest archaeological maize (Zea mays L.) from highland Mexico: New accelerator mass spectrometry dates and their implications. Proc. Natl. Acad. Sci. USA 98, 2101-2103.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 2101-2103
    • Piperno, D.R.1    Flannery, K.V.2
  • 29
    • 1642473027 scopus 로고    scopus 로고
    • Corn and humans: Recombination and linkage disequilibrium in two genomes of similar size
    • Rafalski, A., and Morgante, M. (2004). Corn and humans: Recombination and linkage disequilibrium in two genomes of similar size. Trends Genet. 20, 103-111.
    • (2004) Trends Genet. , vol.20 , pp. 103-111
    • Rafalski, A.1    Morgante, M.2
  • 30
    • 1642274061 scopus 로고    scopus 로고
    • Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A. lyrata
    • Ramos-Onsins, S.E., Stranger, B.E., Mitchell-Olds, T., and Aguadé, M. (2004). Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A. lyrata. Genetics 166, 373-388.
    • (2004) Genetics , vol.166 , pp. 373-388
    • Ramos-Onsins, S.E.1    Stranger, B.E.2    Mitchell-Olds, T.3    Aguadé, M.4
  • 32
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • Rozas, J., Sánchez-DelBarrio, J.C., Messeguer, X., and Rozas, R. (2003). DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19, 2496-2497.
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sánchez-DelBarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 33
    • 0021695885 scopus 로고
    • Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics
    • Saghai-Maroof, M.A., Soliman, K.M., Jorgensen, R.A., and Allard, R.W. (1984). Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl. Acad. Sci. USA 81, 8014-8018.
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 8014-8018
    • Saghai-Maroof, M.A.1    Soliman, K.M.2    Jorgensen, R.A.3    Allard, R.W.4
  • 35
    • 0034724518 scopus 로고    scopus 로고
    • ZEITLUPE encodes a novel clock-associated PAS protein from Arabidopsis
    • Somers, D.E., Schultz, T.F., Milnamow, M., and Kay, S.A. (2000). ZEITLUPE encodes a novel clock-associated PAS protein from Arabidopsis. Cell 101, 319-329.
    • (2000) Cell , vol.101 , pp. 319-329
    • Somers, D.E.1    Schultz, T.F.2    Milnamow, M.3    Kay, S.A.4
  • 36
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey, J.D., and Tibshirani, R. (2003). Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. USA 100, 9440-9445.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 37
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima, F. (1983). Evolutionary relationship of DNA sequences in finite populations. Genetics 105, 437-460.
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 38
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima, F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 39
    • 0036862057 scopus 로고    scopus 로고
    • Patterns of diversity and recombination along chromosome 1 of maize (Zea mays L. ssp. mays)
    • Tenaillon, M.I., Sawkins, M.C., Anderson, L.K., Stack, S.M., Doebley, J., and Gaut, B.S. (2002). Patterns of diversity and recombination along chromosome 1 of maize (Zea mays L. ssp. mays). Genetics 162, 1401-1413.
    • (2002) Genetics , vol.162 , pp. 1401-1413
    • Tenaillon, M.I.1    Sawkins, M.C.2    Anderson, L.K.3    Stack, S.M.4    Doebley, J.5    Gaut, B.S.6
  • 41
    • 3042595170 scopus 로고    scopus 로고
    • Selection versus demography: A multilocus investigation of the domestication process in maize
    • Tenaillon, M.I., U'Ren, J., Tenaillon, O., and Gaut, B.S. (2004). Selection versus demography: A multilocus investigation of the domestication process in maize. Mol. Biol. Evol. 21, 1214-1225.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1214-1225
    • Tenaillon, M.I.1    U'Ren, J.2    Tenaillon, O.3    Gaut, B.S.4
  • 42
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G., and Gibson, T.J. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 44
    • 0030796237 scopus 로고    scopus 로고
    • ARF1, a transcription factor that binds to auxin response elements
    • Ulmasov, T., Hagen, G., and Guilfoyle, T.J. (1997). ARF1, a transcription factor that binds to auxin response elements. Science 276, 1865-1868.
    • (1997) Science , vol.276 , pp. 1865-1868
    • Ulmasov, T.1    Hagen, G.2    Guilfoyle, T.J.3
  • 48
    • 0029911389 scopus 로고    scopus 로고
    • The speciation history of Drosophila pseudoobscura and close relatives: Inferences from DNA sequence variation at the period locus
    • Wang, R.-L., and Hey, J. (1996). The speciation history of Drosophila pseudoobscura and close relatives: Inferences from DNA sequence variation at the period locus. Genetics 144, 1113-1126.
    • (1996) Genetics , vol.144 , pp. 1113-1126
    • Wang, R.-L.1    Hey, J.2
  • 49
    • 0033580401 scopus 로고    scopus 로고
    • The limits of selection during maize domestication
    • Wang, R.-L., Stec, A., Hey, J., Lukens, L., and Doebley, J. (1999). The limits of selection during maize domestication. Nature 398, 236-239.
    • (1999) Nature , vol.398 , pp. 236-239
    • Wang, R.-L.1    Stec, A.2    Hey, J.3    Lukens, L.4    Doebley, J.5
  • 51
    • 14544306215 scopus 로고    scopus 로고
    • Molecular population genetics and the search for adaptive evolution in plants
    • Wright, S.I., and Gaut, B.S. (2005). Molecular population genetics and the search for adaptive evolution in plants. Mol. Biol. Evol. 22, 506-519.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 506-519
    • Wright, S.I.1    Gaut, B.S.2
  • 52
    • 0038075570 scopus 로고    scopus 로고
    • Subdivision and haplotype structure in natural populations of Arabidopsis lyrata
    • Wright, S.I., Lauga, B., and Charlesworth, D. (2003). Subdivision and haplotype structure in natural populations of Arabidopsis lyrata. Mol. Ecol. 12, 1247-1263.
    • (2003) Mol. Ecol. , vol.12 , pp. 1247-1263
    • Wright, S.I.1    Lauga, B.2    Charlesworth, D.3
  • 55


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.